RNA–Protein interactions for RNA: ENST00000539197.5

CCDC7-209, Transcript of coiled-coil domain containing 7, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CCDC7, Length 581 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC7-209ENST00000539197 ZNF511Q8NB15 262 aa13.4□□□□□ -0.26
CCDC7-209ENST00000539197 SNRPBP14678 240 aaKnown RBP13.39□□□□□ -0.27
CCDC7-209ENST00000539197 PRPF38BQ5VTL8 546 aaKnown RBP13.38□□□□□ -0.27
CCDC7-209ENST00000539197 TSC1Q92574 1164 aa13.38□□□□□ -0.27
CCDC7-209ENST00000539197 F12P00748 615 aaPredicted RBP13.37□□□□□ -0.27
CCDC7-209ENST00000539197 WASF2Q9Y6W5 498 aa13.37□□□□□ -0.27
CCDC7-209ENST00000539197 SENP2Q9HC62 589 aa13.36□□□□□ -0.27
CCDC7-209ENST00000539197 RTL5Q5HYW3 569 aaPredicted RBP13.35□□□□□ -0.27
CCDC7-209ENST00000539197 TREML4Q6UXN2 200 aa13.35□□□□□ -0.27
CCDC7-209ENST00000539197 NUTM2BA6NNL0 878 aaPredicted RBP13.34□□□□□ -0.27
CCDC7-209ENST00000539197 NUTM2EB1AL46 878 aaPredicted RBP13.34□□□□□ -0.27
CCDC7-209ENST00000539197 LILRB3O75022 631 aa13.34□□□□□ -0.27
CCDC7-209ENST00000539197 LCE2AQ5TA79 106 aaPredicted RBP13.34□□□□□ -0.27
CCDC7-209ENST00000539197 NUTM2DQ5VT03 806 aaPredicted RBP13.34□□□□□ -0.27
CCDC7-209ENST00000539197 NUTM2AQ8IVF1 878 aaPredicted RBP13.34□□□□□ -0.27
CCDC7-209ENST00000539197 FOXJ1Q92949 421 aa13.34□□□□□ -0.27
CCDC7-209ENST00000539197 POLR3EQ9NVU0 708 aa13.34□□□□□ -0.27
CCDC7-209ENST00000539197 BMP1P13497 986 aa13.33□□□□□ -0.28
CCDC7-209ENST00000539197 VARSP26640 1264 aaKnown RBP13.32□□□□□ -0.28
CCDC7-209ENST00000539197 TRIM47Q96LD4 638 aa13.32□□□□□ -0.28
CCDC7-209ENST00000539197 GPBP1L1Q9HC44 474 aaPredicted RBP13.32□□□□□ -0.28
CCDC7-209ENST00000539197 PLEKHG3A1L390 1219 aa13.3□□□□□ -0.28
CCDC7-209ENST00000539197 CLK2P49760 499 aaKnown RBP13.3□□□□□ -0.28
CCDC7-209ENST00000539197 TUSC1Q2TAM9 212 aa13.3□□□□□ -0.28
CCDC7-209ENST00000539197 KIFC2Q96AC6 838 aa13.3□□□□□ -0.28
CCDC7-209ENST00000539197 CAPN5O15484 640 aaPredicted RBP13.29□□□□□ -0.28
CCDC7-209ENST00000539197 C4orf48Q5BLP8 95 aa13.29□□□□□ -0.28
CCDC7-209ENST00000539197 FBXO31Q5XUX0 539 aaPredicted RBP13.29□□□□□ -0.28
CCDC7-209ENST00000539197 TRIM46Q7Z4K8 759 aa13.29□□□□□ -0.28
CCDC7-209ENST00000539197 MPNDQ8N594 471 aa13.27□□□□□ -0.29
CCDC7-209ENST00000539197 NNTQ13423 1086 aa13.26□□□□□ -0.29
CCDC7-209ENST00000539197 WFS1O76024 890 aa13.25□□□□□ -0.29
CCDC7-209ENST00000539197 NFX1Q12986 1120 aaKnown RBP13.25□□□□□ -0.29
CCDC7-209ENST00000539197 FAM174AQ8TBP5 190 aa13.25□□□□□ -0.29
CCDC7-209ENST00000539197 RSPH6AQ9H0K4 717 aa13.25□□□□□ -0.29
CCDC7-209ENST00000539197 LCE2CQ5TA81 110 aa13.24□□□□□ -0.29
CCDC7-209ENST00000539197 ARID5BQ14865 1188 aa13.23□□□□□ -0.29
CCDC7-209ENST00000539197 FAM117AQ9C073 453 aa13.23□□□□□ -0.29
CCDC7-209ENST00000539197 KDM4CQ9H3R0 1056 aa13.23□□□□□ -0.29
CCDC7-209ENST00000539197 PROCA1Q8NCQ7 364 aaPredicted RBP13.22□□□□□ -0.29
CCDC7-209ENST00000539197 CTDSPL2Q05D32 466 aa13.21□□□□□ -0.29
CCDC7-209ENST00000539197 AGERQ15109 404 aa13.21□□□□□ -0.29
CCDC7-209ENST00000539197 HELBQ8NG08 1087 aaPredicted RBP13.21□□□□□ -0.29
CCDC7-209ENST00000539197 BCANQ96GW7 911 aa13.2□□□□□ -0.3
CCDC7-209ENST00000539197 ADH1CP00326 375 aa13.19□□□□□ -0.3
CCDC7-209ENST00000539197 TIMP2P16035 220 aa13.19□□□□□ -0.3
CCDC7-209ENST00000539197 ARMC2Q8NEN0 867 aa13.19□□□□□ -0.3
CCDC7-209ENST00000539197 NR3C2P08235 984 aa13.18□□□□□ -0.3
CCDC7-209ENST00000539197 WDR4P57081 412 aaKnown RBP13.18□□□□□ -0.3
CCDC7-209ENST00000539197 BPHLQ86WA6 291 aaPredicted RBP13.18□□□□□ -0.3
CCDC7-209ENST00000539197 CDK15Q96Q40 435 aa13.18□□□□□ -0.3
CCDC7-209ENST00000539197 KLF16Q9BXK1 252 aaPredicted RBP13.18□□□□□ -0.3
CCDC7-209ENST00000539197 TERTO14746 1132 aaKnown RBP13.17□□□□□ -0.3
CCDC7-209ENST00000539197 ZFP42Q96MM3 310 aa13.17□□□□□ -0.3
CCDC7-209ENST00000539197 GRM5P41594 1212 aa13.16□□□□□ -0.3
CCDC7-209ENST00000539197 LRRN4Q8WUT4 740 aa13.16□□□□□ -0.3
CCDC7-209ENST00000539197 ZFAND3Q9H8U3 227 aa13.15□□□□□ -0.3
CCDC7-209ENST00000539197 SKIV2LQ15477 1246 aaKnown RBP13.14□□□□□ -0.31
CCDC7-209ENST00000539197 SH3RF1Q7Z6J0 888 aa13.14□□□□□ -0.31
CCDC7-209ENST00000539197 MAGEB6P1A0A0J9YX57 407 aa13.13□□□□□ -0.31
CCDC7-209ENST00000539197 NBPF14Q5TI25 921 aa13.13□□□□□ -0.31
CCDC7-209ENST00000539197 SH3BP5LQ7L8J4 393 aa13.13□□□□□ -0.31
CCDC7-209ENST00000539197 ITPKCQ96DU7 683 aa13.13□□□□□ -0.31
CCDC7-209ENST00000539197 SLC24A1O60721 1099 aa13.12□□□□□ -0.31
CCDC7-209ENST00000539197 SH3D19Q5HYK7 790 aa13.12□□□□□ -0.31
CCDC7-209ENST00000539197 PURBQ96QR8 312 aaKnown RBP13.12□□□□□ -0.31
CCDC7-209ENST00000539197 CARD14Q9BXL6 1004 aa13.12□□□□□ -0.31
CCDC7-209ENST00000539197 ZIC2O95409 532 aaPredicted RBP13.11□□□□□ -0.31
CCDC7-209ENST00000539197 NR5A1Q13285 461 aa13.11□□□□□ -0.31
CCDC7-209ENST00000539197 MRPL14Q6P1L8 145 aaKnown RBP13.11□□□□□ -0.31
CCDC7-209ENST00000539197 GNL3Q9BVP2 549 aaKnown RBP eCLIP13.11□□□□□ -0.31
CCDC7-209ENST00000539197 C1QTNF2Q9BXJ5 285 aa13.11□□□□□ -0.31
CCDC7-209ENST00000539197 VEGFBP49765 207 aa13.1□□□□□ -0.31
CCDC7-209ENST00000539197 SCARF1Q14162 830 aa13.1□□□□□ -0.31
CCDC7-209ENST00000539197 ATP1B4Q9UN42 357 aaPredicted RBP13.1□□□□□ -0.31
CCDC7-209ENST00000539197 SOBPA7XYQ1 873 aa13.09□□□□□ -0.31
CCDC7-209ENST00000539197 DDRGK1Q96HY6 314 aa13.09□□□□□ -0.31
CCDC7-209ENST00000539197 WIPF1O43516 503 aa13.08□□□□□ -0.32
CCDC7-209ENST00000539197 NR6A1Q15406 480 aa13.08□□□□□ -0.32
CCDC7-209ENST00000539197 FSHRP23945 695 aa13.07□□□□□ -0.32
CCDC7-209ENST00000539197 SLC16A10Q8TF71 515 aa13.07□□□□□ -0.32
CCDC7-209ENST00000539197 NXF1Q9UBU9 619 aaKnown RBP13.07□□□□□ -0.32
CCDC7-209ENST00000539197 GPKOWQ92917 476 aaPredicted RBP eCLIP13.06□□□□□ -0.32
CCDC7-209ENST00000539197 VASH1Q7L8A9 365 aaPredicted RBP13.05□□□□□ -0.32
CCDC7-209ENST00000539197 EPS8L1Q8TE68 723 aa13.05□□□□□ -0.32
CCDC7-209ENST00000539197 AP1G2O75843 785 aa13.04□□□□□ -0.32
CCDC7-209ENST00000539197 ERFEQ4G0M1 354 aa13.04□□□□□ -0.32
CCDC7-209ENST00000539197 C6orf118Q5T5N4 469 aa13.04□□□□□ -0.32
CCDC7-209ENST00000539197 PPP2R2DQ66LE6 453 aa13.04□□□□□ -0.32
CCDC7-209ENST00000539197 INSM1Q01101 510 aaPredicted RBP13.03□□□□□ -0.32
CCDC7-209ENST00000539197 TRMT44Q8IYL2 757 aaKnown RBP13.03□□□□□ -0.32
CCDC7-209ENST00000539197 FKBPLQ9UIM3 349 aa13.03□□□□□ -0.32
CCDC7-209ENST00000539197 MAP4K5Q9Y4K4 846 aa13.03□□□□□ -0.32
CCDC7-209ENST00000539197 NPAS3Q8IXF0 933 aa13.02□□□□□ -0.33
CCDC7-209ENST00000539197 HMX1Q9NP08 348 aaPredicted RBP13.02□□□□□ -0.33
CCDC7-209ENST00000539197 OCSTAMPQ9BR26 566 aa13.01□□□□□ -0.33
CCDC7-209ENST00000539197 ARHGAP9Q9BRR9 750 aa12.99□□□□□ -0.33
CCDC7-209ENST00000539197 PDXDC2PQ6P474 469 aa12.98□□□□□ -0.33
CCDC7-209ENST00000539197 ERBB4Q15303 1308 aa12.97□□□□□ -0.33
CCDC7-209ENST00000539197 UPP2O95045 317 aa12.97□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms