RNA–Protein interactions for RNA: ENST00000537408.1

CLSTN3-207, Transcript of calsyntenin 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLSTN3, Length 4,296 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-207ENST00000537408 NLRP1Q9C000 1473 aa13.44□□□□□ -0.26
CLSTN3-207ENST00000537408 NUTM2BA6NNL0 878 aaPredicted RBP13.44□□□□□ -0.26
CLSTN3-207ENST00000537408 NUTM2EB1AL46 878 aaPredicted RBP13.44□□□□□ -0.26
CLSTN3-207ENST00000537408 HDGFL2Q7Z4V5 671 aaPredicted RBP13.44□□□□□ -0.26
CLSTN3-207ENST00000537408 NUTM2AQ8IVF1 878 aaPredicted RBP13.44□□□□□ -0.26
CLSTN3-207ENST00000537408 SEC24BO95487 1268 aa13.44□□□□□ -0.26
CLSTN3-207ENST00000537408 NAIPQ13075 1403 aa13.44□□□□□ -0.26
CLSTN3-207ENST00000537408 HSP90AB1P08238 724 aaKnown RBP13.43□□□□□ -0.26
CLSTN3-207ENST00000537408 KCNA6P17658 529 aa13.43□□□□□ -0.26
CLSTN3-207ENST00000537408 PRIMPOLQ96LW4 560 aa13.43□□□□□ -0.26
CLSTN3-207ENST00000537408 TCOF1Q13428 1488 aaKnown RBP13.43□□□□□ -0.26
CLSTN3-207ENST00000537408 KIF13AQ9H1H9 1805 aa13.43□□□□□ -0.26
CLSTN3-207ENST00000537408 WDR43Q15061 677 aaKnown RBP eCLIP13.43□□□□□ -0.26
CLSTN3-207ENST00000537408 TBX22Q9Y458 520 aa13.43□□□□□ -0.26
CLSTN3-207ENST00000537408 KDM5DQ9BY66 1539 aa13.43□□□□□ -0.26
CLSTN3-207ENST00000537408 NBPF8Q3BBV2 869 aa13.42□□□□□ -0.26
CLSTN3-207ENST00000537408 SPATA31E1Q6ZUB1 1445 aa13.42□□□□□ -0.26
CLSTN3-207ENST00000537408 KIAA2012Q0VF49 1180 aa13.42□□□□□ -0.26
CLSTN3-207ENST00000537408 MYRIPQ8NFW9 859 aa13.42□□□□□ -0.26
CLSTN3-207ENST00000537408 RIMS2Q9UQ26 1411 aa13.42□□□□□ -0.26
CLSTN3-207ENST00000537408 POLR1AO95602 1720 aaPredicted RBP13.42□□□□□ -0.26
CLSTN3-207ENST00000537408 NCBP3Q53F19 620 aaKnown RBP13.42□□□□□ -0.26
CLSTN3-207ENST00000537408 DDX49Q9Y6V7 483 aaKnown RBP13.42□□□□□ -0.26
CLSTN3-207ENST00000537408 USP47Q96K76 1375 aa13.41□□□□□ -0.26
CLSTN3-207ENST00000537408 ARHGEF12Q9NZN5 1544 aa13.41□□□□□ -0.26
CLSTN3-207ENST00000537408 AGLP35573 1532 aa13.41□□□□□ -0.26
CLSTN3-207ENST00000537408 MINK1Q8N4C8 1332 aaPredicted RBP13.41□□□□□ -0.26
CLSTN3-207ENST00000537408 GPRASP1Q5JY77 1395 aa13.41□□□□□ -0.26
CLSTN3-207ENST00000537408 TSPYL1Q9H0U9 437 aa13.41□□□□□ -0.26
CLSTN3-207ENST00000537408 CSB-PGBD3P0DP91 1061 aa13.4□□□□□ -0.26
CLSTN3-207ENST00000537408 NPHP4O75161 1426 aaPredicted RBP13.4□□□□□ -0.26
CLSTN3-207ENST00000537408 KCNJ4P48050 445 aa13.4□□□□□ -0.26
CLSTN3-207ENST00000537408 RBM25P49756 843 aaKnown RBP13.4□□□□□ -0.26
CLSTN3-207ENST00000537408 C19orf44Q9H6X5 657 aa13.4□□□□□ -0.26
CLSTN3-207ENST00000537408 ZMYM4Q5VZL5 1548 aa13.4□□□□□ -0.26
CLSTN3-207ENST00000537408 PDCL2Q8N4E4 241 aa13.4□□□□□ -0.26
CLSTN3-207ENST00000537408 C22orf23Q9BZE7 217 aa13.4□□□□□ -0.26
CLSTN3-207ENST00000537408 CGNL1Q0VF96 1302 aa13.4□□□□□ -0.26
CLSTN3-207ENST00000537408 TNPO1Q92973 898 aaKnown RBP13.39□□□□□ -0.27
CLSTN3-207ENST00000537408 KIF3AQ9Y496 699 aa13.39□□□□□ -0.27
CLSTN3-207ENST00000537408 CHAF1AQ13111 956 aaPredicted RBP13.39□□□□□ -0.27
CLSTN3-207ENST00000537408 TMEM132EQ6IEE7 984 aa13.39□□□□□ -0.27
CLSTN3-207ENST00000537408 PMFBP1Q8TBY8 1022 aa13.39□□□□□ -0.27
CLSTN3-207ENST00000537408 TMEM2Q9UHN6 1383 aa13.39□□□□□ -0.27
CLSTN3-207ENST00000537408 INSRP06213 1382 aa13.38□□□□□ -0.27
CLSTN3-207ENST00000537408 IBTKQ9P2D0 1353 aaPredicted RBP13.38□□□□□ -0.27
CLSTN3-207ENST00000537408 SETD1BQ9UPS6 1966 aaKnown RBP13.38□□□□□ -0.27
CLSTN3-207ENST00000537408 EVA1CP58658 441 aa13.38□□□□□ -0.27
CLSTN3-207ENST00000537408 UGGT1Q9NYU2 1555 aa13.37□□□□□ -0.27
CLSTN3-207ENST00000537408 FBXO41Q8TF61 875 aa13.37□□□□□ -0.27
CLSTN3-207ENST00000537408 RIMS1Q86UR5 1692 aaKnown RBP13.37□□□□□ -0.27
CLSTN3-207ENST00000537408 ZNF335Q9H4Z2 1342 aaPredicted RBP13.37□□□□□ -0.27
CLSTN3-207ENST00000537408 E9PSI1 815 aa13.37□□□□□ -0.27
CLSTN3-207ENST00000537408 RBM33Q96EV2 1170 aaKnown RBP13.37□□□□□ -0.27
CLSTN3-207ENST00000537408 TIGD1Q96MW7 591 aa13.37□□□□□ -0.27
CLSTN3-207ENST00000537408 CHMP4AQ9BY43 222 aa13.37□□□□□ -0.27
CLSTN3-207ENST00000537408 TERF2IPQ9NYB0 399 aa13.37□□□□□ -0.27
CLSTN3-207ENST00000537408 A2ML1A8K2U0 1454 aa13.37□□□□□ -0.27
CLSTN3-207ENST00000537408 MFAP1P55081 439 aaKnown RBP13.36□□□□□ -0.27
CLSTN3-207ENST00000537408 PZPP20742 1482 aa13.36□□□□□ -0.27
CLSTN3-207ENST00000537408 CC2D1BQ5T0F9 858 aaKnown RBP13.36□□□□□ -0.27
CLSTN3-207ENST00000537408 SECISBP2LQ93073 1101 aaKnown RBP13.36□□□□□ -0.27
CLSTN3-207ENST00000537408 EVC2Q86UK5 1308 aa13.36□□□□□ -0.27
CLSTN3-207ENST00000537408 CDC42BPAQ5VT25 1732 aa13.36□□□□□ -0.27
CLSTN3-207ENST00000537408 SOX12O15370 315 aa13.36□□□□□ -0.27
CLSTN3-207ENST00000537408 SLC20A2Q08357 652 aa13.36□□□□□ -0.27
CLSTN3-207ENST00000537408 KLHL40Q2TBA0 621 aa13.36□□□□□ -0.27
CLSTN3-207ENST00000537408 DIP2CQ9Y2E4 1556 aa13.36□□□□□ -0.27
CLSTN3-207ENST00000537408 GOLGA2Q08379 1002 aa13.36□□□□□ -0.27
CLSTN3-207ENST00000537408 MAPK8IP2Q13387 824 aaPredicted RBP13.35□□□□□ -0.27
CLSTN3-207ENST00000537408 CFAP70Q5T0N1 1121 aa13.35□□□□□ -0.27
CLSTN3-207ENST00000537408 GABPB1Q06547 395 aaPredicted RBP13.35□□□□□ -0.27
CLSTN3-207ENST00000537408 DNMT1P26358 1616 aaKnown RBP13.35□□□□□ -0.27
CLSTN3-207ENST00000537408 NINLQ9Y2I6 1382 aa13.34□□□□□ -0.27
CLSTN3-207ENST00000537408 IRX5P78411 483 aaPredicted RBP13.34□□□□□ -0.27
CLSTN3-207ENST00000537408 FEZ1Q99689 392 aa13.34□□□□□ -0.27
CLSTN3-207ENST00000537408 SPDYE4A6NLX3 237 aa13.34□□□□□ -0.27
CLSTN3-207ENST00000537408 SF3B2Q13435 895 aaKnown RBP13.34□□□□□ -0.27
CLSTN3-207ENST00000537408 PANK3Q9H999 370 aa13.34□□□□□ -0.27
CLSTN3-207ENST00000537408 ST20-MTHFSA0A0A6YYL1 179 aa13.34□□□□□ -0.27
CLSTN3-207ENST00000537408 CLUAP1Q96AJ1 413 aa13.33□□□□□ -0.27
CLSTN3-207ENST00000537408 CALCOCO1Q9P1Z2 691 aa13.33□□□□□ -0.27
CLSTN3-207ENST00000537408 ADGRL2O95490 1459 aa13.33□□□□□ -0.27
CLSTN3-207ENST00000537408 TNNT3P45378 269 aaPredicted RBP13.33□□□□□ -0.28
CLSTN3-207ENST00000537408 ATP2B3Q16720 1220 aa13.33□□□□□ -0.28
CLSTN3-207ENST00000537408 VIRMAQ69YN4 1812 aaKnown RBP13.33□□□□□ -0.28
CLSTN3-207ENST00000537408 RAB3GAP1Q15042 981 aa13.33□□□□□ -0.28
CLSTN3-207ENST00000537408 PRAM1Q96QH2 718 aa13.33□□□□□ -0.28
CLSTN3-207ENST00000537408 ADGBQ8N7X0 1667 aa13.33□□□□□ -0.28
CLSTN3-207ENST00000537408 APPP05067 770 aa13.33□□□□□ -0.28
CLSTN3-207ENST00000537408 NGLY1Q96IV0 654 aa13.33□□□□□ -0.28
CLSTN3-207ENST00000537408 SCAF11Q99590 1463 aaKnown RBP13.32□□□□□ -0.28
CLSTN3-207ENST00000537408 ZNF445P59923 1031 aa13.32□□□□□ -0.28
CLSTN3-207ENST00000537408 RPRD2Q5VT52 1461 aaKnown RBP13.32□□□□□ -0.28
CLSTN3-207ENST00000537408 KDM5CP41229 1560 aa13.32□□□□□ -0.28
CLSTN3-207ENST00000537408 ZBTB22O15209 634 aa13.32□□□□□ -0.28
CLSTN3-207ENST00000537408 IGHDP01880 384 aa13.32□□□□□ -0.28
CLSTN3-207ENST00000537408 MADDQ8WXG6 1647 aa13.32□□□□□ -0.28
CLSTN3-207ENST00000537408 AEBP1Q8IUX7 1158 aa13.32□□□□□ -0.28
CLSTN3-207ENST00000537408 DIAPH3Q9NSV4 1193 aa13.32□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 100.8 ms