RNA–Protein interactions for RNA: ENST00000536990.5

SYNE1-234, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 3,003 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-234ENST00000536990 PTPRMP28827 1452 aa14.71□□□□□ -0.05
SYNE1-234ENST00000536990 YTHDC2Q9H6S0 1430 aaKnown RBP14.71□□□□□ -0.05
SYNE1-234ENST00000536990 U2SURPO15042 1029 aaKnown RBP14.71□□□□□ -0.06
SYNE1-234ENST00000536990 FBXO31Q5XUX0 539 aaPredicted RBP14.71□□□□□ -0.06
SYNE1-234ENST00000536990 SLKQ9H2G2 1235 aaPredicted RBP14.7□□□□□ -0.06
SYNE1-234ENST00000536990 STAG3Q9UJ98 1225 aa14.7□□□□□ -0.06
SYNE1-234ENST00000536990 UPF2Q9HAU5 1272 aaKnown RBP14.69□□□□□ -0.06
SYNE1-234ENST00000536990 FYB1O15117 783 aa14.69□□□□□ -0.06
SYNE1-234ENST00000536990 CT47B1P0C2W7 299 aaPredicted RBP14.69□□□□□ -0.06
SYNE1-234ENST00000536990 ZKSCAN2Q63HK3 967 aa14.69□□□□□ -0.06
SYNE1-234ENST00000536990 TBC1D2Q9BYX2 928 aa14.69□□□□□ -0.06
SYNE1-234ENST00000536990 DZIP1LQ8IYY4 767 aaKnown RBP14.68□□□□□ -0.06
SYNE1-234ENST00000536990 HDGFL2Q7Z4V5 671 aaPredicted RBP14.68□□□□□ -0.06
SYNE1-234ENST00000536990 CYB5RLQ6IPT4 315 aa14.67□□□□□ -0.06
SYNE1-234ENST00000536990 TMPOP42166 694 aaKnown RBP14.67□□□□□ -0.06
SYNE1-234ENST00000536990 PLEKHF1Q96S99 279 aa14.67□□□□□ -0.06
SYNE1-234ENST00000536990 CLTCQ00610 1675 aaKnown RBP14.67□□□□□ -0.06
SYNE1-234ENST00000536990 COL3A1P02461 1466 aaPredicted RBP14.66□□□□□ -0.06
SYNE1-234ENST00000536990 TSR2Q969E8 191 aaKnown RBP14.66□□□□□ -0.06
SYNE1-234ENST00000536990 CDK19Q9BWU1 502 aa14.66□□□□□ -0.06
SYNE1-234ENST00000536990 MED14O60244 1454 aa14.66□□□□□ -0.06
SYNE1-234ENST00000536990 ALKQ9UM73 1620 aa14.66□□□□□ -0.06
SYNE1-234ENST00000536990 ANKRD26Q9UPS8 1709 aa14.66□□□□□ -0.06
SYNE1-234ENST00000536990 CD163L1Q9NR16 1453 aa14.66□□□□□ -0.06
SYNE1-234ENST00000536990 FTSJ3Q8IY81 847 aaKnown RBP14.65□□□□□ -0.06
SYNE1-234ENST00000536990 EXOSC9Q06265 439 aaKnown RBP14.65□□□□□ -0.06
SYNE1-234ENST00000536990 TRIM35Q9UPQ4 493 aa14.65□□□□□ -0.06
SYNE1-234ENST00000536990 TRIM27P14373 513 aa14.64□□□□□ -0.07
SYNE1-234ENST00000536990 FAM69CQ0P6D2 419 aa14.64□□□□□ -0.07
SYNE1-234ENST00000536990 HDAC1Q13547 482 aaPredicted RBP14.64□□□□□ -0.07
SYNE1-234ENST00000536990 CABP1Q9NZU7 370 aa14.64□□□□□ -0.07
SYNE1-234ENST00000536990 DIAPH1O60610 1272 aaKnown RBP14.64□□□□□ -0.07
SYNE1-234ENST00000536990 SSH1Q8WYL5 1049 aa14.63□□□□□ -0.07
SYNE1-234ENST00000536990 SMC4Q9NTJ3 1288 aa14.63□□□□□ -0.07
SYNE1-234ENST00000536990 PNNQ9H307 717 aaKnown RBP14.63□□□□□ -0.07
SYNE1-234ENST00000536990 PPP6R1Q9UPN7 881 aa14.62□□□□□ -0.07
SYNE1-234ENST00000536990 ARHGEF40Q8TER5 1519 aa14.62□□□□□ -0.07
SYNE1-234ENST00000536990 IL16Q14005 1332 aa14.61□□□□□ -0.07
SYNE1-234ENST00000536990 RIPK4P57078 832 aa14.61□□□□□ -0.07
SYNE1-234ENST00000536990 ATF7IPQ6VMQ6 1270 aa14.61□□□□□ -0.07
SYNE1-234ENST00000536990 FAM43AQ8N2R8 423 aa14.61□□□□□ -0.07
SYNE1-234ENST00000536990 DDX19BQ9UMR2 479 aa14.61□□□□□ -0.07
SYNE1-234ENST00000536990 SMC5Q8IY18 1101 aa14.6□□□□□ -0.07
SYNE1-234ENST00000536990 C22orf23Q9BZE7 217 aa14.6□□□□□ -0.07
SYNE1-234ENST00000536990 PNPLA6Q8IY17 1366 aa14.6□□□□□ -0.07
SYNE1-234ENST00000536990 ZBTB4Q9P1Z0 1013 aaPredicted RBP14.6□□□□□ -0.07
SYNE1-234ENST00000536990 KIF20BQ96Q89 1820 aa14.6□□□□□ -0.07
SYNE1-234ENST00000536990 WAPLQ7Z5K2 1190 aa14.59□□□□□ -0.07
SYNE1-234ENST00000536990 ITPRIPQ8IWB1 547 aa14.59□□□□□ -0.07
SYNE1-234ENST00000536990 TSPOAP1O95153 1857 aa14.59□□□□□ -0.07
SYNE1-234ENST00000536990 SUGP2Q8IX01 1082 aaKnown RBP eCLIP14.59□□□□□ -0.07
SYNE1-234ENST00000536990 NOB1Q9ULX3 412 aaKnown RBP14.59□□□□□ -0.07
SYNE1-234ENST00000536990 ZBTB40Q9NUA8 1239 aa14.58□□□□□ -0.07
SYNE1-234ENST00000536990 MFAP1P55081 439 aaKnown RBP14.58□□□□□ -0.08
SYNE1-234ENST00000536990 TMEM57Q8N5G2 664 aa14.58□□□□□ -0.08
SYNE1-234ENST00000536990 A2ML1A8K2U0 1454 aa14.58□□□□□ -0.08
SYNE1-234ENST00000536990 FCHSD2O94868 740 aa14.58□□□□□ -0.08
SYNE1-234ENST00000536990 AGLP35573 1532 aa14.57□□□□□ -0.08
SYNE1-234ENST00000536990 DLC1Q96QB1 1528 aa14.57□□□□□ -0.08
SYNE1-234ENST00000536990 RIMS2Q9UQ26 1411 aa14.57□□□□□ -0.08
SYNE1-234ENST00000536990 L1TD1Q5T7N2 865 aaKnown RBP14.57□□□□□ -0.08
SYNE1-234ENST00000536990 REREQ9P2R6 1566 aa14.57□□□□□ -0.08
SYNE1-234ENST00000536990 MCM4P33991 863 aa14.57□□□□□ -0.08
SYNE1-234ENST00000536990 DIP2BQ9P265 1576 aa14.57□□□□□ -0.08
SYNE1-234ENST00000536990 SPRYD3Q8NCJ5 442 aa14.56□□□□□ -0.08
SYNE1-234ENST00000536990 MLECQ14165 292 aa14.56□□□□□ -0.08
SYNE1-234ENST00000536990 ATP7BP35670 1465 aa14.56□□□□□ -0.08
SYNE1-234ENST00000536990 CHMP5Q9NZZ3 219 aa14.55□□□□□ -0.08
SYNE1-234ENST00000536990 POLKQ9UBT6 870 aa14.55□□□□□ -0.08
SYNE1-234ENST00000536990 KIF16BQ96L93 1317 aa14.55□□□□□ -0.08
SYNE1-234ENST00000536990 FBLN1P23142 703 aa14.55□□□□□ -0.08
SYNE1-234ENST00000536990 PRKAR2BP31323 418 aa14.55□□□□□ -0.08
SYNE1-234ENST00000536990 SPATA31D1Q6ZQQ2 1576 aa14.55□□□□□ -0.08
SYNE1-234ENST00000536990 FSD2A1L4K1 749 aa14.54□□□□□ -0.08
SYNE1-234ENST00000536990 CDC42BPGQ6DT37 1551 aa14.54□□□□□ -0.08
SYNE1-234ENST00000536990 IPO8O15397 1037 aaKnown RBP14.54□□□□□ -0.08
SYNE1-234ENST00000536990 NUCB1Q02818 461 aa14.54□□□□□ -0.08
SYNE1-234ENST00000536990 ZNF692Q9BU19 519 aaPredicted RBP14.54□□□□□ -0.08
SYNE1-234ENST00000536990 RSPH6AQ9H0K4 717 aa14.54□□□□□ -0.08
SYNE1-234ENST00000536990 MAP2P11137 1827 aaKnown RBP14.53□□□□□ -0.08
SYNE1-234ENST00000536990 NCOA3Q9Y6Q9 1424 aa14.53□□□□□ -0.08
SYNE1-234ENST00000536990 ALDH1L2Q3SY69 923 aa14.53□□□□□ -0.08
SYNE1-234ENST00000536990 LRRC7Q96NW7 1537 aa14.53□□□□□ -0.08
SYNE1-234ENST00000536990 SETD1AO15047 1707 aaKnown RBP14.52□□□□□ -0.08
SYNE1-234ENST00000536990 WASLO00401 505 aaPredicted RBP14.52□□□□□ -0.08
SYNE1-234ENST00000536990 RBM25P49756 843 aaKnown RBP14.52□□□□□ -0.09
SYNE1-234ENST00000536990 ABCF1Q8NE71 845 aaKnown RBP eCLIP14.52□□□□□ -0.09
SYNE1-234ENST00000536990 FAM135BQ49AJ0 1406 aa14.52□□□□□ -0.09
SYNE1-234ENST00000536990 DDIT3P35638 169 aa14.51□□□□□ -0.09
SYNE1-234ENST00000536990 BRPF1P55201 1214 aaPredicted RBP14.51□□□□□ -0.09
SYNE1-234ENST00000536990 RIMBP3CA6NJZ7 1639 aa14.51□□□□□ -0.09
SYNE1-234ENST00000536990 RIMBP3BA6NNM3 1639 aa14.51□□□□□ -0.09
SYNE1-234ENST00000536990 RIMBP3Q9UFD9 1639 aa14.51□□□□□ -0.09
SYNE1-234ENST00000536990 HMOX1P09601 288 aa14.51□□□□□ -0.09
SYNE1-234ENST00000536990 XRCC6P12956 609 aaKnown RBP eCLIP14.51□□□□□ -0.09
SYNE1-234ENST00000536990 PPIP5K1Q6PFW1 1433 aa14.5□□□□□ -0.09
SYNE1-234ENST00000536990 NFE2L2Q16236 605 aa14.5□□□□□ -0.09
SYNE1-234ENST00000536990 HSCBQ8IWL3 235 aa14.5□□□□□ -0.09
SYNE1-234ENST00000536990 EDC4Q6P2E9 1401 aaKnown RBP14.5□□□□□ -0.09
SYNE1-234ENST00000536990 CPSF1Q10570 1443 aaKnown RBP14.5□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms