RNA–Protein interactions for RNA: ENST00000536239.1

SKA3-207, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 438 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-207ENST00000536239 MOXD2PA6NHM9 499 aa7.4□□□□□ -1.22
SKA3-207ENST00000536239 HAP1P54257 671 aaPredicted RBP7.4□□□□□ -1.22
SKA3-207ENST00000536239 WDR4P57081 412 aaKnown RBP7.4□□□□□ -1.22
SKA3-207ENST00000536239 DESI1Q6ICB0 168 aa7.4□□□□□ -1.22
SKA3-207ENST00000536239 SOBPA7XYQ1 873 aa7.39□□□□□ -1.23
SKA3-207ENST00000536239 ADH1CP00326 375 aa7.39□□□□□ -1.23
SKA3-207ENST00000536239 VSIG8P0DPA2 414 aa7.39□□□□□ -1.23
SKA3-207ENST00000536239 MTMR2Q13614 643 aa7.39□□□□□ -1.23
SKA3-207ENST00000536239 KLF16Q9BXK1 252 aaPredicted RBP7.39□□□□□ -1.23
SKA3-207ENST00000536239 LOC100996750A0A140TA64 210 aa7.38□□□□□ -1.23
SKA3-207ENST00000536239 SPDYE5A6NIY4 337 aa7.38□□□□□ -1.23
SKA3-207ENST00000536239 KRTAP4-6Q9BYQ5 205 aa7.38□□□□□ -1.23
SKA3-207ENST00000536239 FAM174AQ8TBP5 190 aa7.37□□□□□ -1.23
SKA3-207ENST00000536239 CDK15Q96Q40 435 aa7.36□□□□□ -1.23
SKA3-207ENST00000536239 CTHP32929 405 aa7.35□□□□□ -1.23
SKA3-207ENST00000536239 LYPD8Q6UX82 237 aa7.35□□□□□ -1.23
SKA3-207ENST00000536239 ZIC2O95409 532 aaPredicted RBP7.34□□□□□ -1.23
SKA3-207ENST00000536239 FOXJ1Q92949 421 aa7.34□□□□□ -1.23
SKA3-207ENST00000536239 ZFAND3Q9H8U3 227 aa7.34□□□□□ -1.23
SKA3-207ENST00000536239 MAN1A2O60476 641 aa7.33□□□□□ -1.24
SKA3-207ENST00000536239 GJA5P36382 358 aa7.33□□□□□ -1.24
SKA3-207ENST00000536239 ARID5BQ14865 1188 aa7.33□□□□□ -1.24
SKA3-207ENST00000536239 KCNMA1Q12791 1236 aa7.32□□□□□ -1.24
SKA3-207ENST00000536239 NR5A1Q13285 461 aa7.32□□□□□ -1.24
SKA3-207ENST00000536239 TTLL12Q14166 644 aaPredicted RBP7.32□□□□□ -1.24
SKA3-207ENST00000536239 C6orf118Q5T5N4 469 aa7.32□□□□□ -1.24
SKA3-207ENST00000536239 ITPKCQ96DU7 683 aa7.32□□□□□ -1.24
SKA3-207ENST00000536239 PPFIA3O75145 1194 aa7.31□□□□□ -1.24
SKA3-207ENST00000536239 DHX30Q7L2E3 1194 aaKnown RBP eCLIP7.31□□□□□ -1.24
SKA3-207ENST00000536239 BEGAINQ9BUH8 593 aa7.31□□□□□ -1.24
SKA3-207ENST00000536239 MAP10Q9P2G4 905 aa7.31□□□□□ -1.24
SKA3-207ENST00000536239 CFAP99D6REC4 459 aa7.3□□□□□ -1.24
SKA3-207ENST00000536239 F12P00748 615 aaPredicted RBP7.3□□□□□ -1.24
SKA3-207ENST00000536239 NR3C2P08235 984 aa7.3□□□□□ -1.24
SKA3-207ENST00000536239 GRM5P41594 1212 aa7.3□□□□□ -1.24
SKA3-207ENST00000536239 AMHR2Q16671 573 aa7.3□□□□□ -1.24
SKA3-207ENST00000536239 RSBN1LQ6PCB5 846 aaPredicted RBP7.3□□□□□ -1.24
SKA3-207ENST00000536239 GIGYF2Q6Y7W6 1299 aaKnown RBP7.3□□□□□ -1.24
SKA3-207ENST00000536239 TBC1D2Q9BYX2 928 aa7.3□□□□□ -1.24
SKA3-207ENST00000536239 PCDHB15Q9Y5E8 787 aa7.3□□□□□ -1.24
SKA3-207ENST00000536239 SUZ12Q15022 739 aaKnown RBP7.29□□□□□ -1.24
SKA3-207ENST00000536239 DIXDC1Q155Q3 683 aa7.29□□□□□ -1.24
SKA3-207ENST00000536239 C4orf48Q5BLP8 95 aa7.29□□□□□ -1.24
SKA3-207ENST00000536239 UPP2O95045 317 aa7.28□□□□□ -1.24
SKA3-207ENST00000536239 BMP2P12643 396 aa7.28□□□□□ -1.24
SKA3-207ENST00000536239 HRCP23327 699 aa7.28□□□□□ -1.24
SKA3-207ENST00000536239 GSK3AP49840 483 aa7.28□□□□□ -1.24
SKA3-207ENST00000536239 AGERQ15109 404 aa7.28□□□□□ -1.24
SKA3-207ENST00000536239 BARGINQ6ZT62 677 aa7.28□□□□□ -1.24
SKA3-207ENST00000536239 LINC00528Q8N1L1 170 aa7.28□□□□□ -1.24
SKA3-207ENST00000536239 SOS2Q07890 1332 aaPredicted RBP7.27□□□□□ -1.24
SKA3-207ENST00000536239 SPTLC1O15269 473 aa7.27□□□□□ -1.25
SKA3-207ENST00000536239 BPHLQ86WA6 291 aaPredicted RBP7.27□□□□□ -1.25
SKA3-207ENST00000536239 KCTD17Q8N5Z5 321 aa7.27□□□□□ -1.25
SKA3-207ENST00000536239 MEIOBQ8N635 442 aa7.27□□□□□ -1.25
SKA3-207ENST00000536239 ZBTB3Q9H5J0 574 aa7.27□□□□□ -1.25
SKA3-207ENST00000536239 VSIG10Q8N0Z9 540 aa7.26□□□□□ -1.25
SKA3-207ENST00000536239 DNMT3LQ9UJW3 386 aa7.26□□□□□ -1.25
SKA3-207ENST00000536239 ZMYND10O75800 440 aa7.25□□□□□ -1.25
SKA3-207ENST00000536239 PRPF38BQ5VTL8 546 aaKnown RBP7.25□□□□□ -1.25
SKA3-207ENST00000536239 PER1O15534 1290 aaPredicted RBP7.24□□□□□ -1.25
SKA3-207ENST00000536239 RIC3Q7Z5B4 369 aa7.24□□□□□ -1.25
SKA3-207ENST00000536239 GPR161Q8N6U8 529 aaKnown RBP7.24□□□□□ -1.25
SKA3-207ENST00000536239 KRT76Q01546 638 aa7.23□□□□□ -1.25
SKA3-207ENST00000536239 SH3RF1Q7Z6J0 888 aa7.23□□□□□ -1.25
SKA3-207ENST00000536239 TMEM151AQ8N4L1 468 aa7.23□□□□□ -1.25
SKA3-207ENST00000536239 CABLES1Q8TDN4 633 aa7.23□□□□□ -1.25
SKA3-207ENST00000536239 TSEN34Q9BSV6 310 aaKnown RBP7.23□□□□□ -1.25
SKA3-207ENST00000536239 C1QTNF2Q9BXJ5 285 aa7.23□□□□□ -1.25
SKA3-207ENST00000536239 RASSF7Q02833 373 aa7.22□□□□□ -1.25
SKA3-207ENST00000536239 ZNF800Q2TB10 664 aaPredicted RBP eCLIP7.22□□□□□ -1.25
SKA3-207ENST00000536239 ARMC2Q8NEN0 867 aa7.22□□□□□ -1.25
SKA3-207ENST00000536239 CNTNAP3BQ96NU0 1288 aa7.22□□□□□ -1.25
SKA3-207ENST00000536239 CNTNAP3Q9BZ76 1288 aa7.22□□□□□ -1.25
SKA3-207ENST00000536239 ADAMTS8Q9UP79 889 aa7.22□□□□□ -1.25
SKA3-207ENST00000536239 MAP4K5Q9Y4K4 846 aa7.22□□□□□ -1.25
SKA3-207ENST00000536239 GDF11O95390 407 aa7.21□□□□□ -1.26
SKA3-207ENST00000536239 FSHRP23945 695 aa7.21□□□□□ -1.26
SKA3-207ENST00000536239 CSPP1Q1MSJ5 1256 aa7.21□□□□□ -1.26
SKA3-207ENST00000536239 VASH1Q7L8A9 365 aaPredicted RBP7.21□□□□□ -1.26
SKA3-207ENST00000536239 PARP9Q8IXQ6 854 aa7.21□□□□□ -1.26
SKA3-207ENST00000536239 EMILIN1Q9Y6C2 1016 aa7.21□□□□□ -1.26
SKA3-207ENST00000536239 TTLL8A6PVC2 850 aa7.2□□□□□ -1.26
SKA3-207ENST00000536239 PTSQ03393 145 aa7.2□□□□□ -1.26
SKA3-207ENST00000536239 TRMT44Q8IYL2 757 aaKnown RBP7.2□□□□□ -1.26
SKA3-207ENST00000536239 CCDC116Q8IYX3 515 aa7.2□□□□□ -1.26
SKA3-207ENST00000536239 ZC3H15Q8WU90 426 aaKnown RBP7.2□□□□□ -1.26
SKA3-207ENST00000536239 TSC1Q92574 1164 aa7.2□□□□□ -1.26
SKA3-207ENST00000536239 RNF225M0QZC1 329 aaPredicted RBP7.19□□□□□ -1.26
SKA3-207ENST00000536239 SH3BP5LQ7L8J4 393 aa7.19□□□□□ -1.26
SKA3-207ENST00000536239 NANOS1Q8WY41 292 aaKnown RBP7.19□□□□□ -1.26
SKA3-207ENST00000536239 FIGNL2A6NMB9 653 aa7.18□□□□□ -1.26
SKA3-207ENST00000536239 NUTM2BA6NNL0 878 aaPredicted RBP7.18□□□□□ -1.26
SKA3-207ENST00000536239 NUTM2EB1AL46 878 aaPredicted RBP7.18□□□□□ -1.26
SKA3-207ENST00000536239 NBPF14Q5TI25 921 aa7.18□□□□□ -1.26
SKA3-207ENST00000536239 NUTM2DQ5VT03 806 aaPredicted RBP7.18□□□□□ -1.26
SKA3-207ENST00000536239 NUTM2AQ8IVF1 878 aaPredicted RBP7.18□□□□□ -1.26
SKA3-207ENST00000536239 COL25A1Q9BXS0 654 aaPredicted RBP7.18□□□□□ -1.26
SKA3-207ENST00000536239 MAGEB6P1A0A0J9YX57 407 aa7.17□□□□□ -1.26
SKA3-207ENST00000536239 TRIM66O15016 1216 aa7.17□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms