RNA–Protein interactions for RNA: ENST00000536218.5

LIG1-203, Transcript of DNA ligase 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIG1, Length 3,179 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-203ENST00000536218 AAMPQ13685 434 aa17.79■□□□□ 0.44
LIG1-203ENST00000536218 A2ML1A8K2U0 1454 aa17.78■□□□□ 0.44
LIG1-203ENST00000536218 AGLP35573 1532 aa17.78■□□□□ 0.44
LIG1-203ENST00000536218 POLR3AO14802 1390 aaPredicted RBP17.78■□□□□ 0.44
LIG1-203ENST00000536218 PUS7Q96PZ0 661 aaKnown RBP17.78■□□□□ 0.44
LIG1-203ENST00000536218 U2SURPO15042 1029 aaKnown RBP17.77■□□□□ 0.44
LIG1-203ENST00000536218 FBLN1P23142 703 aa17.77■□□□□ 0.44
LIG1-203ENST00000536218 ALKQ9UM73 1620 aa17.77■□□□□ 0.43
LIG1-203ENST00000536218 PTPRMP28827 1452 aa17.77■□□□□ 0.43
LIG1-203ENST00000536218 TCP11L2Q8N4U5 519 aa17.77■□□□□ 0.43
LIG1-203ENST00000536218 HDGFL2Q7Z4V5 671 aaPredicted RBP17.76■□□□□ 0.43
LIG1-203ENST00000536218 FYB1O15117 783 aa17.76■□□□□ 0.43
LIG1-203ENST00000536218 TRHP20396 242 aaPredicted RBP17.76■□□□□ 0.43
LIG1-203ENST00000536218 PDCL3Q9H2J4 239 aa17.76■□□□□ 0.43
LIG1-203ENST00000536218 WWC1Q8IX03 1113 aa17.75■□□□□ 0.43
LIG1-203ENST00000536218 KIF13AQ9H1H9 1805 aa17.74■□□□□ 0.43
LIG1-203ENST00000536218 ATAD2Q6PL18 1390 aa17.74■□□□□ 0.43
LIG1-203ENST00000536218 RUNDC1Q96C34 613 aa17.74■□□□□ 0.43
LIG1-203ENST00000536218 ESPNB1AK53 854 aa17.73■□□□□ 0.43
LIG1-203ENST00000536218 BCAR3O75815 825 aa17.73■□□□□ 0.43
LIG1-203ENST00000536218 SPRYD3Q8NCJ5 442 aa17.73■□□□□ 0.43
LIG1-203ENST00000536218 NCKAP5LQ9HCH0 1330 aa17.73■□□□□ 0.43
LIG1-203ENST00000536218 NUTM2FA1L443 756 aa17.73■□□□□ 0.43
LIG1-203ENST00000536218 BECN1Q14457 450 aa17.73■□□□□ 0.43
LIG1-203ENST00000536218 METP08581 1390 aa17.72■□□□□ 0.43
LIG1-203ENST00000536218 E9PSI1 815 aa17.72■□□□□ 0.43
LIG1-203ENST00000536218 FGD1P98174 961 aa17.72■□□□□ 0.43
LIG1-203ENST00000536218 ABCF1Q8NE71 845 aaKnown RBP eCLIP17.72■□□□□ 0.43
LIG1-203ENST00000536218 CENPQQ7L2Z9 268 aaPredicted RBP17.72■□□□□ 0.43
LIG1-203ENST00000536218 ARID3AQ99856 593 aa17.72■□□□□ 0.43
LIG1-203ENST00000536218 MYH16Q9H6N6 1097 aa17.71■□□□□ 0.43
LIG1-203ENST00000536218 REREQ9P2R6 1566 aa17.71■□□□□ 0.43
LIG1-203ENST00000536218 TNRQ92752 1358 aa17.71■□□□□ 0.43
LIG1-203ENST00000536218 TRIM44Q96DX7 344 aaPredicted RBP17.71■□□□□ 0.43
LIG1-203ENST00000536218 ARHGEF40Q8TER5 1519 aa17.71■□□□□ 0.43
LIG1-203ENST00000536218 CALD1Q05682 793 aaKnown RBP17.71■□□□□ 0.42
LIG1-203ENST00000536218 PRDM4Q9UKN5 801 aa17.7■□□□□ 0.42
LIG1-203ENST00000536218 SPATA31D1Q6ZQQ2 1576 aa17.7■□□□□ 0.42
LIG1-203ENST00000536218 HDGFP51858 240 aaKnown RBP17.7■□□□□ 0.42
LIG1-203ENST00000536218 ABCC11Q96J66 1382 aa17.69■□□□□ 0.42
LIG1-203ENST00000536218 TRMT2AQ8IZ69 625 aaKnown RBP17.69■□□□□ 0.42
LIG1-203ENST00000536218 SLC26A8Q96RN1 970 aa17.69■□□□□ 0.42
LIG1-203ENST00000536218 ERBB4Q15303 1308 aa17.68■□□□□ 0.42
LIG1-203ENST00000536218 TPM2P07951 284 aa17.68■□□□□ 0.42
LIG1-203ENST00000536218 GOLGA6L2Q8N9W4 650 aaPredicted RBP17.68■□□□□ 0.42
LIG1-203ENST00000536218 KDM2BQ8NHM5 1336 aa17.67■□□□□ 0.42
LIG1-203ENST00000536218 NSD2O96028 1365 aa17.67■□□□□ 0.42
LIG1-203ENST00000536218 WASLO00401 505 aaPredicted RBP17.67■□□□□ 0.42
LIG1-203ENST00000536218 PDE4CQ08493 712 aa17.67■□□□□ 0.42
LIG1-203ENST00000536218 NINLQ9Y2I6 1382 aa17.66■□□□□ 0.42
LIG1-203ENST00000536218 CANXP27824 592 aaKnown RBP17.66■□□□□ 0.42
LIG1-203ENST00000536218 LTKP29376 864 aa17.66■□□□□ 0.42
LIG1-203ENST00000536218 KIAA1211Q6ZU35 1233 aa17.66■□□□□ 0.42
LIG1-203ENST00000536218 ZRANB1Q9UGI0 708 aa17.66■□□□□ 0.42
LIG1-203ENST00000536218 FSD2A1L4K1 749 aa17.65■□□□□ 0.42
LIG1-203ENST00000536218 BCL2L13Q9BXK5 485 aa17.65■□□□□ 0.42
LIG1-203ENST00000536218 NUDT16Q96DE0 195 aaKnown RBP17.65■□□□□ 0.42
LIG1-203ENST00000536218 NKTRP30414 1462 aaKnown RBP17.64■□□□□ 0.42
LIG1-203ENST00000536218 CD163L1Q9NR16 1453 aa17.64■□□□□ 0.41
LIG1-203ENST00000536218 MRE11P49959 708 aa17.64■□□□□ 0.41
LIG1-203ENST00000536218 NME9Q86XW9 330 aa17.63■□□□□ 0.41
LIG1-203ENST00000536218 NGEFQ8N5V2 710 aa17.63■□□□□ 0.41
LIG1-203ENST00000536218 FAM13BQ9NYF5 915 aa17.63■□□□□ 0.41
LIG1-203ENST00000536218 DIAPH1O60610 1272 aaKnown RBP17.62■□□□□ 0.41
LIG1-203ENST00000536218 SEC24BO95487 1268 aa17.62■□□□□ 0.41
LIG1-203ENST00000536218 TMEM2Q9UHN6 1383 aa17.62■□□□□ 0.41
LIG1-203ENST00000536218 MAPK8IP3Q9UPT6 1336 aa17.62■□□□□ 0.41
LIG1-203ENST00000536218 GRPEL1Q9HAV7 217 aa17.61■□□□□ 0.41
LIG1-203ENST00000536218 TRAK2O60296 914 aa17.6■□□□□ 0.41
LIG1-203ENST00000536218 MCM4P33991 863 aa17.6■□□□□ 0.41
LIG1-203ENST00000536218 PANK1Q8TE04 598 aa17.6■□□□□ 0.41
LIG1-203ENST00000536218 TSR2Q969E8 191 aaKnown RBP17.6■□□□□ 0.41
LIG1-203ENST00000536218 SHPRHQ149N8 1683 aa17.59■□□□□ 0.41
LIG1-203ENST00000536218 ZHX1Q9UKY1 873 aaPredicted RBP17.59■□□□□ 0.41
LIG1-203ENST00000536218 EMILIN1Q9Y6C2 1016 aa17.59■□□□□ 0.41
LIG1-203ENST00000536218 CCDC61Q9Y6R9 512 aa17.59■□□□□ 0.41
LIG1-203ENST00000536218 PPIP5K1Q6PFW1 1433 aa17.59■□□□□ 0.41
LIG1-203ENST00000536218 EID1Q9Y6B2 187 aa17.59■□□□□ 0.41
LIG1-203ENST00000536218 HMOX1P09601 288 aa17.59■□□□□ 0.41
LIG1-203ENST00000536218 POLKQ9UBT6 870 aa17.59■□□□□ 0.41
LIG1-203ENST00000536218 USP32Q8NFA0 1604 aa17.58■□□□□ 0.4
LIG1-203ENST00000536218 USP19O94966 1318 aa17.58■□□□□ 0.4
LIG1-203ENST00000536218 TMPOP42166 694 aaKnown RBP17.58■□□□□ 0.4
LIG1-203ENST00000536218 COG6Q9Y2V7 657 aa17.58■□□□□ 0.4
LIG1-203ENST00000536218 WDR63Q8IWG1 891 aa17.57■□□□□ 0.4
LIG1-203ENST00000536218 SOX12O15370 315 aa17.57■□□□□ 0.4
LIG1-203ENST00000536218 RRS1Q15050 365 aaKnown RBP17.57■□□□□ 0.4
LIG1-203ENST00000536218 CLUAP1Q96AJ1 413 aa17.57■□□□□ 0.4
LIG1-203ENST00000536218 ANTXR1Q9H6X2 564 aa17.57■□□□□ 0.4
LIG1-203ENST00000536218 RIPK4P57078 832 aa17.56■□□□□ 0.4
LIG1-203ENST00000536218 PRDM10Q9NQV6 1147 aa17.56■□□□□ 0.4
LIG1-203ENST00000536218 ROBO2Q9HCK4 1378 aa17.56■□□□□ 0.4
LIG1-203ENST00000536218 PLEKHF1Q96S99 279 aa17.56■□□□□ 0.4
LIG1-203ENST00000536218 TNNQ9UQP3 1299 aa17.56■□□□□ 0.4
LIG1-203ENST00000536218 PRR36Q9H6K5 1346 aa17.55■□□□□ 0.4
LIG1-203ENST00000536218 NLRP1Q9C000 1473 aa17.55■□□□□ 0.4
LIG1-203ENST00000536218 RARSP54136 660 aaKnown RBP17.55■□□□□ 0.4
LIG1-203ENST00000536218 PHF23Q9BUL5 403 aaPredicted RBP17.55■□□□□ 0.4
LIG1-203ENST00000536218 COG3Q96JB2 828 aa17.54■□□□□ 0.4
LIG1-203ENST00000536218 PRKAR2BP31323 418 aa17.54■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms