RNA–Protein interactions for RNA: ENST00000535997.6

CHMP1A-202, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 2 BASIC

Gene CHMP1A, Length 2,295 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-202ENST00000535997 PPP6R1Q9UPN7 881 aa20.51■□□□□ 0.87
CHMP1A-202ENST00000535997 TRIM35Q9UPQ4 493 aa20.51■□□□□ 0.87
CHMP1A-202ENST00000535997 CDK19Q9BWU1 502 aa20.5■□□□□ 0.87
CHMP1A-202ENST00000535997 TNNQ9UQP3 1299 aa20.5■□□□□ 0.87
CHMP1A-202ENST00000535997 USP19O94966 1318 aa20.49■□□□□ 0.87
CHMP1A-202ENST00000535997 NLRP1Q9C000 1473 aa20.49■□□□□ 0.87
CHMP1A-202ENST00000535997 PNPLA6Q8IY17 1366 aa20.49■□□□□ 0.87
CHMP1A-202ENST00000535997 NFKBIBQ15653 356 aa20.49■□□□□ 0.87
CHMP1A-202ENST00000535997 DZIP1LQ8IYY4 767 aaKnown RBP20.49■□□□□ 0.87
CHMP1A-202ENST00000535997 ANKRD26Q9UPS8 1709 aa20.49■□□□□ 0.87
CHMP1A-202ENST00000535997 DIAPH1O60610 1272 aaKnown RBP20.48■□□□□ 0.87
CHMP1A-202ENST00000535997 SENP3Q9H4L4 574 aaPredicted RBP20.48■□□□□ 0.87
CHMP1A-202ENST00000535997 ALKQ9UM73 1620 aa20.48■□□□□ 0.87
CHMP1A-202ENST00000535997 STAG3Q9UJ98 1225 aa20.48■□□□□ 0.87
CHMP1A-202ENST00000535997 EXOSC9Q06265 439 aaKnown RBP20.47■□□□□ 0.87
CHMP1A-202ENST00000535997 FTSJ3Q8IY81 847 aaKnown RBP20.47■□□□□ 0.87
CHMP1A-202ENST00000535997 TSR2Q969E8 191 aaKnown RBP20.47■□□□□ 0.87
CHMP1A-202ENST00000535997 CABP1Q9NZU7 370 aa20.47■□□□□ 0.87
CHMP1A-202ENST00000535997 ARHGEF40Q8TER5 1519 aa20.47■□□□□ 0.87
CHMP1A-202ENST00000535997 PDZRN3Q9UPQ7 1066 aa20.46■□□□□ 0.87
CHMP1A-202ENST00000535997 RIPK4P57078 832 aa20.45■□□□□ 0.86
CHMP1A-202ENST00000535997 SMC4Q9NTJ3 1288 aa20.45■□□□□ 0.86
CHMP1A-202ENST00000535997 FCHSD2O94868 740 aa20.44■□□□□ 0.86
CHMP1A-202ENST00000535997 SEC24BO95487 1268 aa20.44■□□□□ 0.86
CHMP1A-202ENST00000535997 SSH1Q8WYL5 1049 aa20.43■□□□□ 0.86
CHMP1A-202ENST00000535997 DDX19BQ9UMR2 479 aa20.42■□□□□ 0.86
CHMP1A-202ENST00000535997 TRIM27P14373 513 aa20.42■□□□□ 0.86
CHMP1A-202ENST00000535997 ATF7IPQ6VMQ6 1270 aa20.42■□□□□ 0.86
CHMP1A-202ENST00000535997 UPF2Q9HAU5 1272 aaKnown RBP20.41■□□□□ 0.86
CHMP1A-202ENST00000535997 BECN1Q14457 450 aa20.41■□□□□ 0.86
CHMP1A-202ENST00000535997 CYB5RLQ6IPT4 315 aa20.41■□□□□ 0.86
CHMP1A-202ENST00000535997 DLC1Q96QB1 1528 aa20.4■□□□□ 0.86
CHMP1A-202ENST00000535997 HDAC1Q13547 482 aaPredicted RBP20.4■□□□□ 0.86
CHMP1A-202ENST00000535997 FAM69CQ0P6D2 419 aa20.39■□□□□ 0.86
CHMP1A-202ENST00000535997 IPO8O15397 1037 aaKnown RBP20.39■□□□□ 0.85
CHMP1A-202ENST00000535997 AGLP35573 1532 aa20.39■□□□□ 0.85
CHMP1A-202ENST00000535997 REREQ9P2R6 1566 aa20.38■□□□□ 0.85
CHMP1A-202ENST00000535997 GSE1Q14687 1217 aa20.38■□□□□ 0.85
CHMP1A-202ENST00000535997 NOB1Q9ULX3 412 aaKnown RBP20.38■□□□□ 0.85
CHMP1A-202ENST00000535997 ALDH1L2Q3SY69 923 aa20.38■□□□□ 0.85
CHMP1A-202ENST00000535997 POLKQ9UBT6 870 aa20.38■□□□□ 0.85
CHMP1A-202ENST00000535997 ATP7BP35670 1465 aa20.38■□□□□ 0.85
CHMP1A-202ENST00000535997 ZNF428Q96B54 188 aa20.37■□□□□ 0.85
CHMP1A-202ENST00000535997 KIF20BQ96Q89 1820 aa20.37■□□□□ 0.85
CHMP1A-202ENST00000535997 A2ML1A8K2U0 1454 aa20.37■□□□□ 0.85
CHMP1A-202ENST00000535997 CDC42BPGQ6DT37 1551 aa20.37■□□□□ 0.85
CHMP1A-202ENST00000535997 KIF16BQ96L93 1317 aa20.36■□□□□ 0.85
CHMP1A-202ENST00000535997 WAPLQ7Z5K2 1190 aa20.36■□□□□ 0.85
CHMP1A-202ENST00000535997 ITPRIPQ8IWB1 547 aa20.36■□□□□ 0.85
CHMP1A-202ENST00000535997 TBC1D32Q96NH3 1257 aa20.36■□□□□ 0.85
CHMP1A-202ENST00000535997 SUGP2Q8IX01 1082 aaKnown RBP eCLIP20.35■□□□□ 0.85
CHMP1A-202ENST00000535997 RSPH6AQ9H0K4 717 aa20.35■□□□□ 0.85
CHMP1A-202ENST00000535997 RIMS2Q9UQ26 1411 aa20.34■□□□□ 0.85
CHMP1A-202ENST00000535997 BRPF1P55201 1214 aaPredicted RBP20.34■□□□□ 0.85
CHMP1A-202ENST00000535997 ZBTB40Q9NUA8 1239 aa20.34■□□□□ 0.85
CHMP1A-202ENST00000535997 PRKAR2BP31323 418 aa20.33■□□□□ 0.85
CHMP1A-202ENST00000535997 SPATA31D1Q6ZQQ2 1576 aa20.33■□□□□ 0.85
CHMP1A-202ENST00000535997 SMC5Q8IY18 1101 aa20.33■□□□□ 0.84
CHMP1A-202ENST00000535997 TMEM57Q8N5G2 664 aa20.32■□□□□ 0.84
CHMP1A-202ENST00000535997 FAM135BQ49AJ0 1406 aa20.32■□□□□ 0.84
CHMP1A-202ENST00000535997 FRAT2O75474 233 aaPredicted RBP20.32■□□□□ 0.84
CHMP1A-202ENST00000535997 CALD1Q05682 793 aaKnown RBP20.32■□□□□ 0.84
CHMP1A-202ENST00000535997 PPIP5K1Q6PFW1 1433 aa20.31■□□□□ 0.84
CHMP1A-202ENST00000535997 WASLO00401 505 aaPredicted RBP20.3■□□□□ 0.84
CHMP1A-202ENST00000535997 ABCF1Q8NE71 845 aaKnown RBP eCLIP20.3■□□□□ 0.84
CHMP1A-202ENST00000535997 CPSF1Q10570 1443 aaKnown RBP20.3■□□□□ 0.84
CHMP1A-202ENST00000535997 NFE2L2Q16236 605 aa20.3■□□□□ 0.84
CHMP1A-202ENST00000535997 MAP2P11137 1827 aaKnown RBP20.29■□□□□ 0.84
CHMP1A-202ENST00000535997 EDC4Q6P2E9 1401 aaKnown RBP20.29■□□□□ 0.84
CHMP1A-202ENST00000535997 LRRC7Q96NW7 1537 aa20.29■□□□□ 0.84
CHMP1A-202ENST00000535997 SETD1AO15047 1707 aaKnown RBP20.29■□□□□ 0.84
CHMP1A-202ENST00000535997 DIP2BQ9P265 1576 aa20.29■□□□□ 0.84
CHMP1A-202ENST00000535997 FBLN1P23142 703 aa20.29■□□□□ 0.84
CHMP1A-202ENST00000535997 SIRT1Q96EB6 747 aa20.28■□□□□ 0.84
CHMP1A-202ENST00000535997 PHACTR3Q96KR7 559 aa20.28■□□□□ 0.84
CHMP1A-202ENST00000535997 AATKQ6ZMQ8 1374 aa20.27■□□□□ 0.84
CHMP1A-202ENST00000535997 IL13P35225 146 aa20.27■□□□□ 0.83
CHMP1A-202ENST00000535997 ARHGAP45Q92619 1136 aa20.27■□□□□ 0.83
CHMP1A-202ENST00000535997 CHMP4BQ9H444 224 aaKnown RBP20.27■□□□□ 0.83
CHMP1A-202ENST00000535997 HDGFP51858 240 aaKnown RBP20.26■□□□□ 0.83
CHMP1A-202ENST00000535997 GNAI1P63096 354 aa20.25■□□□□ 0.83
CHMP1A-202ENST00000535997 CCDC61Q9Y6R9 512 aa20.25■□□□□ 0.83
CHMP1A-202ENST00000535997 RIMBP3CA6NJZ7 1639 aa20.25■□□□□ 0.83
CHMP1A-202ENST00000535997 RIMBP3BA6NNM3 1639 aa20.25■□□□□ 0.83
CHMP1A-202ENST00000535997 RIMBP3Q9UFD9 1639 aa20.25■□□□□ 0.83
CHMP1A-202ENST00000535997 VAMP4O75379 141 aa20.25■□□□□ 0.83
CHMP1A-202ENST00000535997 HMOX1P09601 288 aa20.25■□□□□ 0.83
CHMP1A-202ENST00000535997 IFT57Q9NWB7 429 aa20.25■□□□□ 0.83
CHMP1A-202ENST00000535997 EMILIN1Q9Y6C2 1016 aa20.24■□□□□ 0.83
CHMP1A-202ENST00000535997 NUDT16Q96DE0 195 aaKnown RBP20.24■□□□□ 0.83
CHMP1A-202ENST00000535997 TBC1D2Q9BYX2 928 aa20.24■□□□□ 0.83
CHMP1A-202ENST00000535997 ANTXR1Q9H6X2 564 aa20.24■□□□□ 0.83
CHMP1A-202ENST00000535997 TSPOAP1O95153 1857 aa20.24■□□□□ 0.83
CHMP1A-202ENST00000535997 NUCB1Q02818 461 aa20.23■□□□□ 0.83
CHMP1A-202ENST00000535997 NME9Q86XW9 330 aa20.23■□□□□ 0.83
CHMP1A-202ENST00000535997 METP08581 1390 aa20.23■□□□□ 0.83
CHMP1A-202ENST00000535997 ZNF853P0CG23 659 aa20.23■□□□□ 0.83
CHMP1A-202ENST00000535997 MLECQ14165 292 aa20.23■□□□□ 0.83
CHMP1A-202ENST00000535997 C22orf23Q9BZE7 217 aa20.23■□□□□ 0.83
CHMP1A-202ENST00000535997 CDK12Q9NYV4 1490 aaPredicted RBP20.23■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms