RNA–Protein interactions for RNA: ENST00000535977.5

RAB40C-203, Transcript of RAB40C, member RAS oncogene family, humanhuman

APPRIS P1 TSL 5 BASIC

Gene RAB40C, Length 2,717 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAB40C-203ENST00000535977 NEUROD2Q15784 382 aa22.94■■□□□ 1.26
RAB40C-203ENST00000535977 STAG3Q9UJ98 1225 aa22.94■■□□□ 1.26
RAB40C-203ENST00000535977 SAFB2Q14151 953 aaKnown RBP eCLIP22.93■■□□□ 1.26
RAB40C-203ENST00000535977 HDGFL2Q7Z4V5 671 aaPredicted RBP22.93■■□□□ 1.26
RAB40C-203ENST00000535977 PNNQ9H307 717 aaKnown RBP22.92■■□□□ 1.26
RAB40C-203ENST00000535977 ADGRB2O60241 1585 aa22.92■■□□□ 1.26
RAB40C-203ENST00000535977 ANKRD26Q9UPS8 1709 aa22.92■■□□□ 1.26
RAB40C-203ENST00000535977 HSP90AA2PQ14568 343 aaPredicted RBP22.91■■□□□ 1.26
RAB40C-203ENST00000535977 CLUAP1Q96AJ1 413 aa22.91■■□□□ 1.26
RAB40C-203ENST00000535977 RRP7AQ9Y3A4 280 aaKnown RBP22.91■■□□□ 1.26
RAB40C-203ENST00000535977 FBXO31Q5XUX0 539 aaPredicted RBP22.91■■□□□ 1.26
RAB40C-203ENST00000535977 DLC1Q96QB1 1528 aa22.9■■□□□ 1.26
RAB40C-203ENST00000535977 MINK1Q8N4C8 1332 aaPredicted RBP22.89■■□□□ 1.26
RAB40C-203ENST00000535977 NAP1L5Q96NT1 182 aaPredicted RBP22.89■■□□□ 1.26
RAB40C-203ENST00000535977 FYB1O15117 783 aa22.88■■□□□ 1.25
RAB40C-203ENST00000535977 ARHGEF40Q8TER5 1519 aa22.88■■□□□ 1.25
RAB40C-203ENST00000535977 CD163L1Q9NR16 1453 aa22.87■■□□□ 1.25
RAB40C-203ENST00000535977 PMFBP1Q8TBY8 1022 aa22.87■■□□□ 1.25
RAB40C-203ENST00000535977 SPATA31D1Q6ZQQ2 1576 aa22.87■■□□□ 1.25
RAB40C-203ENST00000535977 RRP9O43818 475 aaKnown RBP22.87■■□□□ 1.25
RAB40C-203ENST00000535977 CDK19Q9BWU1 502 aa22.87■■□□□ 1.25
RAB40C-203ENST00000535977 MAPK8IP3Q9UPT6 1336 aa22.86■■□□□ 1.25
RAB40C-203ENST00000535977 GGNBP2Q9H3C7 697 aa22.86■■□□□ 1.25
RAB40C-203ENST00000535977 COL3A1P02461 1466 aaPredicted RBP22.85■■□□□ 1.25
RAB40C-203ENST00000535977 IL16Q14005 1332 aa22.85■■□□□ 1.25
RAB40C-203ENST00000535977 C8orf34Q49A92 452 aa22.85■■□□□ 1.25
RAB40C-203ENST00000535977 PLEKHF1Q96S99 279 aa22.85■■□□□ 1.25
RAB40C-203ENST00000535977 PODXL2Q9NZ53 605 aa22.85■■□□□ 1.25
RAB40C-203ENST00000535977 COG6Q9Y2V7 657 aa22.85■■□□□ 1.25
RAB40C-203ENST00000535977 A2ML1A8K2U0 1454 aa22.84■■□□□ 1.25
RAB40C-203ENST00000535977 NLRP1Q9C000 1473 aa22.84■■□□□ 1.25
RAB40C-203ENST00000535977 HSP90AA1P07900 732 aaKnown RBP22.84■■□□□ 1.25
RAB40C-203ENST00000535977 PANK1Q8TE04 598 aa22.84■■□□□ 1.25
RAB40C-203ENST00000535977 PNPLA6Q8IY17 1366 aa22.83■■□□□ 1.25
RAB40C-203ENST00000535977 PLEKHG5O94827 1062 aa22.83■■□□□ 1.24
RAB40C-203ENST00000535977 IGHDP01880 384 aa22.82■■□□□ 1.24
RAB40C-203ENST00000535977 TMPOP42166 694 aaKnown RBP22.82■■□□□ 1.24
RAB40C-203ENST00000535977 ABCF1Q8NE71 845 aaKnown RBP eCLIP22.82■■□□□ 1.24
RAB40C-203ENST00000535977 RIMS2Q9UQ26 1411 aa22.82■■□□□ 1.24
RAB40C-203ENST00000535977 ATP7BP35670 1465 aa22.81■■□□□ 1.24
RAB40C-203ENST00000535977 U2SURPO15042 1029 aaKnown RBP22.81■■□□□ 1.24
RAB40C-203ENST00000535977 DIAPH1O60610 1272 aaKnown RBP22.81■■□□□ 1.24
RAB40C-203ENST00000535977 RGS3P49796 1198 aa22.81■■□□□ 1.24
RAB40C-203ENST00000535977 ZMYM3Q14202 1370 aa22.8■■□□□ 1.24
RAB40C-203ENST00000535977 L1TD1Q5T7N2 865 aaKnown RBP22.8■■□□□ 1.24
RAB40C-203ENST00000535977 CABP1Q9NZU7 370 aa22.8■■□□□ 1.24
RAB40C-203ENST00000535977 KIF20BQ96Q89 1820 aa22.79■■□□□ 1.24
RAB40C-203ENST00000535977 HDGFP51858 240 aaKnown RBP22.78■■□□□ 1.24
RAB40C-203ENST00000535977 ZKSCAN2Q63HK3 967 aa22.77■■□□□ 1.24
RAB40C-203ENST00000535977 FCHSD2O94868 740 aa22.77■■□□□ 1.24
RAB40C-203ENST00000535977 RWDD1Q9H446 243 aaPredicted RBP22.76■■□□□ 1.23
RAB40C-203ENST00000535977 SIRT1Q96EB6 747 aa22.76■■□□□ 1.23
RAB40C-203ENST00000535977 TRIM35Q9UPQ4 493 aa22.75■■□□□ 1.23
RAB40C-203ENST00000535977 CDC42BPGQ6DT37 1551 aa22.75■■□□□ 1.23
RAB40C-203ENST00000535977 SETD1AO15047 1707 aaKnown RBP22.74■■□□□ 1.23
RAB40C-203ENST00000535977 CLCN1P35523 988 aa22.74■■□□□ 1.23
RAB40C-203ENST00000535977 MVPQ14764 893 aaKnown RBP22.73■■□□□ 1.23
RAB40C-203ENST00000535977 RLBP1P12271 317 aa22.73■■□□□ 1.23
RAB40C-203ENST00000535977 DZIP1LQ8IYY4 767 aaKnown RBP22.73■■□□□ 1.23
RAB40C-203ENST00000535977 SENP3Q9H4L4 574 aaPredicted RBP22.72■■□□□ 1.23
RAB40C-203ENST00000535977 RIPK4P57078 832 aa22.72■■□□□ 1.23
RAB40C-203ENST00000535977 MLECQ14165 292 aa22.72■■□□□ 1.23
RAB40C-203ENST00000535977 FTSJ3Q8IY81 847 aaKnown RBP22.71■■□□□ 1.23
RAB40C-203ENST00000535977 ESF1Q9H501 851 aaKnown RBP22.71■■□□□ 1.23
RAB40C-203ENST00000535977 VIRMAQ69YN4 1812 aaKnown RBP22.71■■□□□ 1.23
RAB40C-203ENST00000535977 EDC4Q6P2E9 1401 aaKnown RBP22.7■■□□□ 1.22
RAB40C-203ENST00000535977 EXOSC9Q06265 439 aaKnown RBP22.7■■□□□ 1.22
RAB40C-203ENST00000535977 ARXQ96QS3 562 aa22.7■■□□□ 1.22
RAB40C-203ENST00000535977 WAPLQ7Z5K2 1190 aa22.69■■□□□ 1.22
RAB40C-203ENST00000535977 ZNF428Q96B54 188 aa22.69■■□□□ 1.22
RAB40C-203ENST00000535977 BCL2L13Q9BXK5 485 aa22.69■■□□□ 1.22
RAB40C-203ENST00000535977 PCDHB15Q9Y5E8 787 aa22.69■■□□□ 1.22
RAB40C-203ENST00000535977 FAM135BQ49AJ0 1406 aa22.69■■□□□ 1.22
RAB40C-203ENST00000535977 WASLO00401 505 aaPredicted RBP22.69■■□□□ 1.22
RAB40C-203ENST00000535977 SMC4Q9NTJ3 1288 aa22.69■■□□□ 1.22
RAB40C-203ENST00000535977 CPSF1Q10570 1443 aaKnown RBP22.68■■□□□ 1.22
RAB40C-203ENST00000535977 IPO8O15397 1037 aaKnown RBP22.67■■□□□ 1.22
RAB40C-203ENST00000535977 XRCC6P12956 609 aaKnown RBP eCLIP22.67■■□□□ 1.22
RAB40C-203ENST00000535977 CALD1Q05682 793 aaKnown RBP22.67■■□□□ 1.22
RAB40C-203ENST00000535977 TSR2Q969E8 191 aaKnown RBP22.67■■□□□ 1.22
RAB40C-203ENST00000535977 POLKQ9UBT6 870 aa22.67■■□□□ 1.22
RAB40C-203ENST00000535977 DDX19BQ9UMR2 479 aa22.66■■□□□ 1.22
RAB40C-203ENST00000535977 ALDH1L2Q3SY69 923 aa22.66■■□□□ 1.22
RAB40C-203ENST00000535977 KIF16BQ96L93 1317 aa22.66■■□□□ 1.22
RAB40C-203ENST00000535977 TECPR2O15040 1411 aa22.65■■□□□ 1.22
RAB40C-203ENST00000535977 AATKQ6ZMQ8 1374 aa22.65■■□□□ 1.22
RAB40C-203ENST00000535977 KNDC1Q76NI1 1749 aa22.65■■□□□ 1.22
RAB40C-203ENST00000535977 ATF7IPQ6VMQ6 1270 aa22.65■■□□□ 1.22
RAB40C-203ENST00000535977 SUGP2Q8IX01 1082 aaKnown RBP eCLIP22.65■■□□□ 1.22
RAB40C-203ENST00000535977 NRXN3Q9Y4C0 1643 aa22.64■■□□□ 1.22
RAB40C-203ENST00000535977 SSH1Q8WYL5 1049 aa22.64■■□□□ 1.21
RAB40C-203ENST00000535977 TNNQ9UQP3 1299 aa22.64■■□□□ 1.21
RAB40C-203ENST00000535977 PPIP5K1Q6PFW1 1433 aa22.63■■□□□ 1.21
RAB40C-203ENST00000535977 BRPF1P55201 1214 aaPredicted RBP22.62■■□□□ 1.21
RAB40C-203ENST00000535977 PANK2Q9BZ23 570 aa22.62■■□□□ 1.21
RAB40C-203ENST00000535977 PDZRN3Q9UPQ7 1066 aa22.62■■□□□ 1.21
RAB40C-203ENST00000535977 HDAC1Q13547 482 aaPredicted RBP22.62■■□□□ 1.21
RAB40C-203ENST00000535977 ZNF692Q9BU19 519 aaPredicted RBP22.62■■□□□ 1.21
RAB40C-203ENST00000535977 TRIM27P14373 513 aa22.61■■□□□ 1.21
RAB40C-203ENST00000535977 CCDC61Q9Y6R9 512 aa22.61■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms