RNA–Protein interactions for RNA: ENST00000533244.5

CCS-208, Transcript of copper chaperone for superoxide dismutase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCS, Length 1,430 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCS-208ENST00000533244 PUS7Q96PZ0 661 aaKnown RBP28.85■■■□□ 2.21
CCS-208ENST00000533244 USP6P35125 1406 aa28.84■■■□□ 2.21
CCS-208ENST00000533244 SLC24A1O60721 1099 aa28.83■■■□□ 2.21
CCS-208ENST00000533244 AKAP12Q02952 1782 aa28.83■■■□□ 2.2
CCS-208ENST00000533244 SSH2Q76I76 1423 aa28.82■■■□□ 2.2
CCS-208ENST00000533244 PAK3O75914 559 aaPredicted RBP28.82■■■□□ 2.2
CCS-208ENST00000533244 CABLES1Q8TDN4 633 aa28.82■■■□□ 2.2
CCS-208ENST00000533244 CPSF1Q10570 1443 aaKnown RBP28.8■■■□□ 2.2
CCS-208ENST00000533244 FNBP4Q8N3X1 1017 aaPredicted RBP28.8■■■□□ 2.2
CCS-208ENST00000533244 NGLY1Q96IV0 654 aa28.8■■■□□ 2.2
CCS-208ENST00000533244 CD163L1Q9NR16 1453 aa28.77■■■□□ 2.2
CCS-208ENST00000533244 NRKQ7Z2Y5 1582 aa28.77■■■□□ 2.2
CCS-208ENST00000533244 PHRF1Q9P1Y6 1649 aaKnown RBP28.76■■■□□ 2.19
CCS-208ENST00000533244 ZNF692Q9BU19 519 aaPredicted RBP28.76■■■□□ 2.19
CCS-208ENST00000533244 SLIT2O94813 1529 aa28.76■■■□□ 2.19
CCS-208ENST00000533244 MON2Q7Z3U7 1717 aa28.75■■■□□ 2.19
CCS-208ENST00000533244 BCL9LQ86UU0 1499 aa28.74■■■□□ 2.19
CCS-208ENST00000533244 HAP1P54257 671 aaPredicted RBP28.74■■■□□ 2.19
CCS-208ENST00000533244 TNKS1BP1Q9C0C2 1729 aaKnown RBP28.72■■■□□ 2.19
CCS-208ENST00000533244 TMF1P82094 1093 aa28.72■■■□□ 2.19
CCS-208ENST00000533244 NINLQ9Y2I6 1382 aa28.71■■■□□ 2.19
CCS-208ENST00000533244 USP19O94966 1318 aa28.71■■■□□ 2.19
CCS-208ENST00000533244 PLEKHG5O94827 1062 aa28.71■■■□□ 2.19
CCS-208ENST00000533244 ABTB2Q8N961 1025 aa28.71■■■□□ 2.19
CCS-208ENST00000533244 USP21Q9UK80 565 aa28.71■■■□□ 2.19
CCS-208ENST00000533244 PIK3C2AO00443 1686 aa28.71■■■□□ 2.19
CCS-208ENST00000533244 PLCH1Q4KWH8 1693 aa28.7■■■□□ 2.18
CCS-208ENST00000533244 SLC12A5Q9H2X9 1139 aa28.69■■■□□ 2.18
CCS-208ENST00000533244 ATRNO75882 1429 aa28.69■■■□□ 2.18
CCS-208ENST00000533244 KTN1Q86UP2 1357 aaKnown RBP28.69■■■□□ 2.18
CCS-208ENST00000533244 NWD2Q9ULI1 1742 aa28.69■■■□□ 2.18
CCS-208ENST00000533244 NUTM2GQ5VZR2 741 aa28.69■■■□□ 2.18
CCS-208ENST00000533244 TTC21BQ7Z4L5 1316 aa28.68■■■□□ 2.18
CCS-208ENST00000533244 QTRT2Q9H974 415 aaKnown RBP28.68■■■□□ 2.18
CCS-208ENST00000533244 TMC1Q8TDI8 760 aa28.67■■■□□ 2.18
CCS-208ENST00000533244 COL14A1Q05707 1796 aaKnown RBP28.66■■■□□ 2.18
CCS-208ENST00000533244 TTC21AQ8NDW8 1320 aa28.66■■■□□ 2.18
CCS-208ENST00000533244 NLRP13Q86W25 1043 aa28.66■■■□□ 2.18
CCS-208ENST00000533244 CDK12Q9NYV4 1490 aaPredicted RBP28.66■■■□□ 2.18
CCS-208ENST00000533244 SLIT3O75094 1523 aa28.65■■■□□ 2.18
CCS-208ENST00000533244 FAM83GA6ND36 823 aa28.65■■■□□ 2.18
CCS-208ENST00000533244 TRPC5Q9UL62 973 aaPredicted RBP28.65■■■□□ 2.18
CCS-208ENST00000533244 A0A1W2PP64 1363 aa28.65■■■□□ 2.18
CCS-208ENST00000533244 SOCS7O14512 581 aa28.64■■■□□ 2.18
CCS-208ENST00000533244 RXRBP28702 533 aa28.64■■■□□ 2.18
CCS-208ENST00000533244 EIF4G2P78344 907 aaKnown RBP eCLIP28.64■■■□□ 2.182e-6■■■■■ 26.9
CCS-208ENST00000533244 CDCA8Q53HL2 280 aa28.63■■■□□ 2.17
CCS-208ENST00000533244 HDGFL2Q7Z4V5 671 aaPredicted RBP28.63■■■□□ 2.17
CCS-208ENST00000533244 UNC5CLQ8IV45 518 aa28.63■■■□□ 2.17
CCS-208ENST00000533244 RBM6P78332 1123 aaKnown RBP28.62■■■□□ 2.17
CCS-208ENST00000533244 TERF2IPQ9NYB0 399 aa28.62■■■□□ 2.17
CCS-208ENST00000533244 NRAPQ86VF7 1730 aa28.62■■■□□ 2.17
CCS-208ENST00000533244 EDC4Q6P2E9 1401 aaKnown RBP28.62■■■□□ 2.17
CCS-208ENST00000533244 HSPA5P11021 654 aaKnown RBP28.61■■■□□ 2.17
CCS-208ENST00000533244 USP54Q70EL1 1684 aa28.61■■■□□ 2.17
CCS-208ENST00000533244 KIAA0232Q92628 1395 aa28.61■■■□□ 2.17
CCS-208ENST00000533244 NLRP6P59044 892 aa28.6■■■□□ 2.17
CCS-208ENST00000533244 CPDO75976 1380 aa28.6■■■□□ 2.17
CCS-208ENST00000533244 MYOM1P52179 1685 aa28.59■■■□□ 2.17
CCS-208ENST00000533244 GCP02774 474 aa28.59■■■□□ 2.17
CCS-208ENST00000533244 ANKRD36BQ8N2N9 1353 aa28.58■■■□□ 2.17
CCS-208ENST00000533244 PRDM11Q9NQV5 511 aa28.58■■■□□ 2.17
CCS-208ENST00000533244 USP31Q70CQ4 1352 aa28.57■■■□□ 2.16
CCS-208ENST00000533244 RGS12O14924 1447 aa28.56■■■□□ 2.16
CCS-208ENST00000533244 ZC3H6P61129 1189 aaKnown RBP28.55■■■□□ 2.16
CCS-208ENST00000533244 GLI3P10071 1580 aa28.55■■■□□ 2.16
CCS-208ENST00000533244 LMO7Q8WWI1 1683 aa28.54■■■□□ 2.16
CCS-208ENST00000533244 BTG4Q9NY30 223 aa28.54■■■□□ 2.16
CCS-208ENST00000533244 VPS72Q15906 364 aa28.53■■■□□ 2.16
CCS-208ENST00000533244 GJD4Q96KN9 370 aaPredicted RBP28.53■■■□□ 2.16
CCS-208ENST00000533244 SUGP2Q8IX01 1082 aaKnown RBP eCLIP28.52■■■□□ 2.16
CCS-208ENST00000533244 NFAT5O94916 1531 aa28.51■■■□□ 2.15
CCS-208ENST00000533244 CHRNA2Q15822 529 aa28.51■■■□□ 2.15
CCS-208ENST00000533244 NME9Q86XW9 330 aa28.51■■■□□ 2.15
CCS-208ENST00000533244 OVOS2A0A0J9YW53 1432 aa28.49■■■□□ 2.15
CCS-208ENST00000533244 OVOS2Q6IE36 1432 aa28.49■■■□□ 2.15
CCS-208ENST00000533244 KCNH5Q8NCM2 988 aa28.49■■■□□ 2.15
CCS-208ENST00000533244 ZRANB1Q9UGI0 708 aa28.49■■■□□ 2.15
CCS-208ENST00000533244 CAMTA1Q9Y6Y1 1673 aa28.48■■■□□ 2.15
CCS-208ENST00000533244 COL18A1P39060 1754 aa28.46■■■□□ 2.15
CCS-208ENST00000533244 AATKQ6ZMQ8 1374 aa28.45■■■□□ 2.14
CCS-208ENST00000533244 ARHGEF25Q86VW2 580 aa28.43■■■□□ 2.14
CCS-208ENST00000533244 SPATA31A5Q5VU36 1347 aa28.41■■■□□ 2.14
CCS-208ENST00000533244 SPATA31A7Q8IWB4 1347 aa28.41■■■□□ 2.14
CCS-208ENST00000533244 ABCC6O95255 1503 aa28.41■■■□□ 2.14
CCS-208ENST00000533244 C11orf95C9JLR9 678 aaPredicted RBP28.41■■■□□ 2.14
CCS-208ENST00000533244 COL5A2P05997 1499 aaPredicted RBP28.41■■■□□ 2.14
CCS-208ENST00000533244 ONECUT3O60422 494 aaPredicted RBP28.4■■■□□ 2.14
CCS-208ENST00000533244 CARD14Q9BXL6 1004 aa28.4■■■□□ 2.14
CCS-208ENST00000533244 CCDC9Q9Y3X0 531 aaKnown RBP28.39■■■□□ 2.14
CCS-208ENST00000533244 KIF20BQ96Q89 1820 aa28.37■■■□□ 2.13
CCS-208ENST00000533244 NSD3Q9BZ95 1437 aa28.36■■■□□ 2.13
CCS-208ENST00000533244 FYB1O15117 783 aa28.36■■■□□ 2.13
CCS-208ENST00000533244 SOX12O15370 315 aa28.36■■■□□ 2.13
CCS-208ENST00000533244 STRN4Q9NRL3 753 aa28.36■■■□□ 2.13
CCS-208ENST00000533244 SPATA31A1Q5TZJ5 1347 aa28.36■■■□□ 2.13
CCS-208ENST00000533244 COG3Q96JB2 828 aa28.35■■■□□ 2.13
CCS-208ENST00000533244 POLR3GLQ9BT43 218 aa28.35■■■□□ 2.13
CCS-208ENST00000533244 AXIN2Q9Y2T1 843 aa28.35■■■□□ 2.13
CCS-208ENST00000533244 LTN1O94822 1766 aa28.34■■■□□ 2.13
Retrieved 100 of 20,778 RNA–protein pairs in 9.2 ms