RNA–Protein interactions for RNA: ENST00000533069.1

PKP3-209, Transcript of plakophilin 3, humanhuman

TSL 2

Gene PKP3, Length 590 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PKP3-209ENST00000533069 CABP2Q9NPB3 220 aa23.69■■□□□ 1.38
PKP3-209ENST00000533069 PAK3O75914 559 aaPredicted RBP23.68■■□□□ 1.38
PKP3-209ENST00000533069 SLIT2O94813 1529 aa23.68■■□□□ 1.38
PKP3-209ENST00000533069 SBNO2Q9Y2G9 1366 aa23.67■■□□□ 1.38
PKP3-209ENST00000533069 ABCA3Q99758 1704 aa23.67■■□□□ 1.38
PKP3-209ENST00000533069 CLSPNQ9HAW4 1339 aa23.66■■□□□ 1.38
PKP3-209ENST00000533069 PLEKHG5O94827 1062 aa23.65■■□□□ 1.38
PKP3-209ENST00000533069 RGS12O14924 1447 aa23.65■■□□□ 1.38
PKP3-209ENST00000533069 UNC5CLQ8IV45 518 aa23.64■■□□□ 1.37
PKP3-209ENST00000533069 BRD4O60885 1362 aaPredicted RBP23.64■■□□□ 1.37
PKP3-209ENST00000533069 TNKS1BP1Q9C0C2 1729 aaKnown RBP23.62■■□□□ 1.37
PKP3-209ENST00000533069 CABP1Q9NZU7 370 aa23.61■■□□□ 1.37
PKP3-209ENST00000533069 ATAD2Q6PL18 1390 aa23.6■■□□□ 1.37
PKP3-209ENST00000533069 GJD4Q96KN9 370 aaPredicted RBP23.59■■□□□ 1.37
PKP3-209ENST00000533069 TIMELESSQ9UNS1 1208 aa23.59■■□□□ 1.37
PKP3-209ENST00000533069 CRYBG1Q9Y4K1 1723 aa23.58■■□□□ 1.37
PKP3-209ENST00000533069 NWD2Q9ULI1 1742 aa23.57■■□□□ 1.36
PKP3-209ENST00000533069 FAM83GA6ND36 823 aa23.57■■□□□ 1.36
PKP3-209ENST00000533069 USP6P35125 1406 aa23.57■■□□□ 1.36
PKP3-209ENST00000533069 PLCH1Q4KWH8 1693 aa23.57■■□□□ 1.36
PKP3-209ENST00000533069 ABTB2Q8N961 1025 aa23.56■■□□□ 1.36
PKP3-209ENST00000533069 VPS72Q15906 364 aa23.55■■□□□ 1.36
PKP3-209ENST00000533069 COL14A1Q05707 1796 aaKnown RBP23.54■■□□□ 1.36
PKP3-209ENST00000533069 NUTM2GQ5VZR2 741 aa23.53■■□□□ 1.36
PKP3-209ENST00000533069 PRDM11Q9NQV5 511 aa23.53■■□□□ 1.36
PKP3-209ENST00000533069 USP19O94966 1318 aa23.53■■□□□ 1.36
PKP3-209ENST00000533069 PHRF1Q9P1Y6 1649 aaKnown RBP23.52■■□□□ 1.36
PKP3-209ENST00000533069 SLC24A1O60721 1099 aa23.52■■□□□ 1.36
PKP3-209ENST00000533069 NLRP13Q86W25 1043 aa23.52■■□□□ 1.36
PKP3-209ENST00000533069 ZNF692Q9BU19 519 aaPredicted RBP23.52■■□□□ 1.36
PKP3-209ENST00000533069 SSH2Q76I76 1423 aa23.51■■□□□ 1.35
PKP3-209ENST00000533069 UPF1Q92900 1129 aaKnown RBP eCLIP23.51■■□□□ 1.35
PKP3-209ENST00000533069 BTG4Q9NY30 223 aa23.51■■□□□ 1.35
PKP3-209ENST00000533069 GLI3P10071 1580 aa23.51■■□□□ 1.35
PKP3-209ENST00000533069 KIAA0232Q92628 1395 aa23.51■■□□□ 1.35
PKP3-209ENST00000533069 PUS7Q96PZ0 661 aaKnown RBP23.49■■□□□ 1.35
PKP3-209ENST00000533069 CPSF1Q10570 1443 aaKnown RBP23.49■■□□□ 1.35
PKP3-209ENST00000533069 NRKQ7Z2Y5 1582 aa23.48■■□□□ 1.35
PKP3-209ENST00000533069 NRAPQ86VF7 1730 aa23.48■■□□□ 1.35
PKP3-209ENST00000533069 CCDC9Q9Y3X0 531 aaKnown RBP23.48■■□□□ 1.35
PKP3-209ENST00000533069 CPDO75976 1380 aa23.48■■□□□ 1.35
PKP3-209ENST00000533069 ST20-MTHFSA0A0A6YYL1 179 aa23.47■■□□□ 1.35
PKP3-209ENST00000533069 TESK2Q96S53 571 aa23.46■■□□□ 1.35
PKP3-209ENST00000533069 KTN1Q86UP2 1357 aaKnown RBP23.45■■□□□ 1.34
PKP3-209ENST00000533069 TTC21AQ8NDW8 1320 aa23.45■■□□□ 1.34
PKP3-209ENST00000533069 ZC3H6P61129 1189 aaKnown RBP23.45■■□□□ 1.34
PKP3-209ENST00000533069 USP47Q96K76 1375 aa23.44■■□□□ 1.34
PKP3-209ENST00000533069 TTC21BQ7Z4L5 1316 aa23.44■■□□□ 1.34
PKP3-209ENST00000533069 GCP02774 474 aa23.44■■□□□ 1.34
PKP3-209ENST00000533069 NLRP6P59044 892 aa23.44■■□□□ 1.34
PKP3-209ENST00000533069 CCER1Q8TC90 406 aaPredicted RBP23.44■■□□□ 1.34
PKP3-209ENST00000533069 ONECUT3O60422 494 aaPredicted RBP23.43■■□□□ 1.34
PKP3-209ENST00000533069 SLIT3O75094 1523 aa23.43■■□□□ 1.34
PKP3-209ENST00000533069 AKAP12Q02952 1782 aa23.42■■□□□ 1.34
PKP3-209ENST00000533069 CHRNA2Q15822 529 aa23.42■■□□□ 1.34
PKP3-209ENST00000533069 PIK3C2AO00443 1686 aa23.41■■□□□ 1.34
PKP3-209ENST00000533069 NINLQ9Y2I6 1382 aa23.41■■□□□ 1.34
PKP3-209ENST00000533069 TMC1Q8TDI8 760 aa23.41■■□□□ 1.34
PKP3-209ENST00000533069 SPATA31A5Q5VU36 1347 aa23.4■■□□□ 1.34
PKP3-209ENST00000533069 SPATA31A7Q8IWB4 1347 aa23.4■■□□□ 1.34
PKP3-209ENST00000533069 HDGFL2Q7Z4V5 671 aaPredicted RBP23.4■■□□□ 1.34
PKP3-209ENST00000533069 SEPT12Q8IYM1 358 aa23.4■■□□□ 1.34
PKP3-209ENST00000533069 CD163L1Q9NR16 1453 aa23.4■■□□□ 1.34
PKP3-209ENST00000533069 TERF2IPQ9NYB0 399 aa23.39■■□□□ 1.33
PKP3-209ENST00000533069 MON2Q7Z3U7 1717 aa23.38■■□□□ 1.33
PKP3-209ENST00000533069 SLC12A5Q9H2X9 1139 aa23.37■■□□□ 1.33
PKP3-209ENST00000533069 EDC4Q6P2E9 1401 aaKnown RBP23.36■■□□□ 1.33
PKP3-209ENST00000533069 LMO7Q8WWI1 1683 aa23.36■■□□□ 1.33
PKP3-209ENST00000533069 TMF1P82094 1093 aa23.36■■□□□ 1.33
PKP3-209ENST00000533069 FAM98CQ17RN3 349 aaKnown RBP23.36■■□□□ 1.33
PKP3-209ENST00000533069 KCNH5Q8NCM2 988 aa23.36■■□□□ 1.33
PKP3-209ENST00000533069 STRN4Q9NRL3 753 aa23.36■■□□□ 1.33
PKP3-209ENST00000533069 EVA1CP58658 441 aa23.35■■□□□ 1.33
PKP3-209ENST00000533069 A0A1W2PP64 1363 aa23.35■■□□□ 1.33
PKP3-209ENST00000533069 AATKQ6ZMQ8 1374 aa23.35■■□□□ 1.33
PKP3-209ENST00000533069 CAMTA1Q9Y6Y1 1673 aa23.35■■□□□ 1.33
PKP3-209ENST00000533069 SPATA31A1Q5TZJ5 1347 aa23.34■■□□□ 1.33
PKP3-209ENST00000533069 A0A0G2JS52 829 aa23.34■■□□□ 1.33
PKP3-209ENST00000533069 MYT1Q01538 1121 aa23.34■■□□□ 1.33
PKP3-209ENST00000533069 USP31Q70CQ4 1352 aa23.34■■□□□ 1.33
PKP3-209ENST00000533069 CDCA8Q53HL2 280 aa23.33■■□□□ 1.33
PKP3-209ENST00000533069 CCDC125Q86Z20 511 aa23.33■■□□□ 1.33
PKP3-209ENST00000533069 KRT27Q7Z3Y8 459 aa23.32■■□□□ 1.32
PKP3-209ENST00000533069 SUGP2Q8IX01 1082 aaKnown RBP eCLIP23.32■■□□□ 1.32
PKP3-209ENST00000533069 COL5A2P05997 1499 aaPredicted RBP23.31■■□□□ 1.32
PKP3-209ENST00000533069 EP400Q96L91 3159 aa23.3■■□□□ 1.32
PKP3-209ENST00000533069 THSD7AQ9UPZ6 1657 aa23.29■■□□□ 1.32
PKP3-209ENST00000533069 ZBTB7CA1YPR0 619 aa23.29■■□□□ 1.32
PKP3-209ENST00000533069 ARHGEF25Q86VW2 580 aa23.29■■□□□ 1.32
PKP3-209ENST00000533069 USP54Q70EL1 1684 aa23.28■■□□□ 1.32
PKP3-209ENST00000533069 NFAT5O94916 1531 aa23.28■■□□□ 1.32
PKP3-209ENST00000533069 LARP1Q6PKG0 1096 aaKnown RBP23.28■■□□□ 1.32
PKP3-209ENST00000533069 NME9Q86XW9 330 aa23.28■■□□□ 1.32
PKP3-209ENST00000533069 ANKRD36BQ8N2N9 1353 aa23.27■■□□□ 1.32
PKP3-209ENST00000533069 BARGINQ6ZT62 677 aa23.27■■□□□ 1.32
PKP3-209ENST00000533069 BLMP54132 1417 aaPredicted RBP23.26■■□□□ 1.31
PKP3-209ENST00000533069 TCP11L2Q8N4U5 519 aa23.26■■□□□ 1.31
PKP3-209ENST00000533069 THRAP3Q9Y2W1 955 aaKnown RBP23.26■■□□□ 1.31
PKP3-209ENST00000533069 ABCC6O95255 1503 aa23.26■■□□□ 1.31
PKP3-209ENST00000533069 BRWD3Q6RI45 1802 aa23.26■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 159 ms