RNA–Protein interactions for RNA: ENST00000533018.1

PCF11-206, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

TSL 3

Gene PCF11, Length 580 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-206ENST00000533018 BTG4Q9NY30 223 aa25.72■■□□□ 1.71
PCF11-206ENST00000533018 BRWD3Q6RI45 1802 aa25.72■■□□□ 1.71
PCF11-206ENST00000533018 CCDC125Q86Z20 511 aa25.71■■□□□ 1.71
PCF11-206ENST00000533018 CCDC61Q9Y6R9 512 aa25.68■■□□□ 1.7
PCF11-206ENST00000533018 COL14A1Q05707 1796 aaKnown RBP25.67■■□□□ 1.7
PCF11-206ENST00000533018 SRPK2P78362 688 aaKnown RBP25.67■■□□□ 1.7
PCF11-206ENST00000533018 ACEP12821 1306 aa25.66■■□□□ 1.7
PCF11-206ENST00000533018 NUTM2GQ5VZR2 741 aa25.66■■□□□ 1.7
PCF11-206ENST00000533018 PRDM11Q9NQV5 511 aa25.66■■□□□ 1.7
PCF11-206ENST00000533018 NEUROD1Q13562 356 aa25.65■■□□□ 1.7
PCF11-206ENST00000533018 NBPF8Q3BBV2 869 aa25.65■■□□□ 1.7
PCF11-206ENST00000533018 L3MBTL2Q969R5 705 aa25.65■■□□□ 1.7
PCF11-206ENST00000533018 SIN3AQ96ST3 1273 aa25.65■■□□□ 1.7
PCF11-206ENST00000533018 CENPJQ9HC77 1338 aaPredicted RBP25.64■■□□□ 1.7
PCF11-206ENST00000533018 NRAPQ86VF7 1730 aa25.63■■□□□ 1.69
PCF11-206ENST00000533018 ONECUT3O60422 494 aaPredicted RBP25.63■■□□□ 1.69
PCF11-206ENST00000533018 SF3B2Q13435 895 aaKnown RBP25.63■■□□□ 1.69
PCF11-206ENST00000533018 FAM98CQ17RN3 349 aaKnown RBP25.63■■□□□ 1.69
PCF11-206ENST00000533018 KRT27Q7Z3Y8 459 aa25.63■■□□□ 1.69
PCF11-206ENST00000533018 ZRANB1Q9UGI0 708 aa25.63■■□□□ 1.69
PCF11-206ENST00000533018 TOPAZ1Q8N9V7 1692 aa25.63■■□□□ 1.69
PCF11-206ENST00000533018 CRYBG1Q9Y4K1 1723 aa25.63■■□□□ 1.69
PCF11-206ENST00000533018 SRCAPQ6ZRS2 3230 aa25.62■■□□□ 1.69
PCF11-206ENST00000533018 PLEKHG3A1L390 1219 aa25.61■■□□□ 1.69
PCF11-206ENST00000533018 CABP2Q9NPB3 220 aa25.61■■□□□ 1.69
PCF11-206ENST00000533018 BLMP54132 1417 aaPredicted RBP25.61■■□□□ 1.69
PCF11-206ENST00000533018 POLR3AO14802 1390 aaPredicted RBP25.6■■□□□ 1.69
PCF11-206ENST00000533018 ZC3H6P61129 1189 aaKnown RBP25.6■■□□□ 1.69
PCF11-206ENST00000533018 KIAA0232Q92628 1395 aa25.59■■□□□ 1.69
PCF11-206ENST00000533018 QRICH2Q9H0J4 1663 aa25.59■■□□□ 1.69
PCF11-206ENST00000533018 CHRNA2Q15822 529 aa25.59■■□□□ 1.69
PCF11-206ENST00000533018 ABTB2Q8N961 1025 aa25.59■■□□□ 1.69
PCF11-206ENST00000533018 PPIP5K1Q6PFW1 1433 aa25.57■■□□□ 1.68
PCF11-206ENST00000533018 PHRF1Q9P1Y6 1649 aaKnown RBP25.57■■□□□ 1.68
PCF11-206ENST00000533018 STRN4Q9NRL3 753 aa25.57■■□□□ 1.68
PCF11-206ENST00000533018 SPATA31A5Q5VU36 1347 aa25.56■■□□□ 1.68
PCF11-206ENST00000533018 SPATA31A7Q8IWB4 1347 aa25.56■■□□□ 1.68
PCF11-206ENST00000533018 DEFB132Q7Z7B7 95 aa25.55■■□□□ 1.68
PCF11-206ENST00000533018 EVA1CP58658 441 aa25.52■■□□□ 1.68
PCF11-206ENST00000533018 ROCK2O75116 1388 aaKnown RBP25.52■■□□□ 1.68
PCF11-206ENST00000533018 TRPM1Q7Z4N2 1603 aa25.52■■□□□ 1.68
PCF11-206ENST00000533018 CABP1Q9NZU7 370 aa25.51■■□□□ 1.67
PCF11-206ENST00000533018 NLRP13Q86W25 1043 aa25.5■■□□□ 1.67
PCF11-206ENST00000533018 USP35Q9P2H5 1018 aa25.5■■□□□ 1.67
PCF11-206ENST00000533018 EVC2Q86UK5 1308 aa25.49■■□□□ 1.67
PCF11-206ENST00000533018 FAM182BQ5T319 152 aa25.49■■□□□ 1.67
PCF11-206ENST00000533018 SPATA31A1Q5TZJ5 1347 aa25.48■■□□□ 1.67
PCF11-206ENST00000533018 NRKQ7Z2Y5 1582 aa25.46■■□□□ 1.67
PCF11-206ENST00000533018 ZBTB7CA1YPR0 619 aa25.45■■□□□ 1.66
PCF11-206ENST00000533018 GCP02774 474 aa25.45■■□□□ 1.66
PCF11-206ENST00000533018 BAG6P46379 1132 aa25.44■■□□□ 1.66
PCF11-206ENST00000533018 NLRP6P59044 892 aa25.44■■□□□ 1.66
PCF11-206ENST00000533018 USP19O94966 1318 aa25.43■■□□□ 1.66
PCF11-206ENST00000533018 BRD4O60885 1362 aaPredicted RBP25.43■■□□□ 1.66
PCF11-206ENST00000533018 THSD7AQ9UPZ6 1657 aa25.42■■□□□ 1.66
PCF11-206ENST00000533018 USP6P35125 1406 aa25.42■■□□□ 1.66
PCF11-206ENST00000533018 SSH2Q76I76 1423 aa25.41■■□□□ 1.66
PCF11-206ENST00000533018 LARP1Q6PKG0 1096 aaKnown RBP25.41■■□□□ 1.66
PCF11-206ENST00000533018 CPDO75976 1380 aa25.41■■□□□ 1.66
PCF11-206ENST00000533018 CAMTA1Q9Y6Y1 1673 aa25.4■■□□□ 1.66
PCF11-206ENST00000533018 RGPD1P0DJD0 1748 aa25.39■■□□□ 1.65
PCF11-206ENST00000533018 EN1Q05925 392 aaPredicted RBP25.37■■□□□ 1.65
PCF11-206ENST00000533018 PDE3BQ13370 1112 aa25.37■■□□□ 1.65
PCF11-206ENST00000533018 LMO7Q8WWI1 1683 aa25.36■■□□□ 1.65
PCF11-206ENST00000533018 BARGINQ6ZT62 677 aa25.36■■□□□ 1.65
PCF11-206ENST00000533018 TCP11L2Q8N4U5 519 aa25.36■■□□□ 1.65
PCF11-206ENST00000533018 ZNF692Q9BU19 519 aaPredicted RBP25.36■■□□□ 1.65
PCF11-206ENST00000533018 CARD11Q9BXL7 1154 aa25.36■■□□□ 1.65
PCF11-206ENST00000533018 FAM196AQ6ZSG2 479 aa25.35■■□□□ 1.65
PCF11-206ENST00000533018 TONSLQ96HA7 1378 aa25.34■■□□□ 1.65
PCF11-206ENST00000533018 TRIM37O94972 964 aa25.33■■□□□ 1.65
PCF11-206ENST00000533018 PIK3C2AO00443 1686 aa25.32■■□□□ 1.64
PCF11-206ENST00000533018 SOX12O15370 315 aa25.32■■□□□ 1.64
PCF11-206ENST00000533018 PSDA5PKW4 1024 aaPredicted RBP25.31■■□□□ 1.64
PCF11-206ENST00000533018 THRAP3Q9Y2W1 955 aaKnown RBP25.31■■□□□ 1.64
PCF11-206ENST00000533018 COL5A2P05997 1499 aaPredicted RBP25.31■■□□□ 1.64
PCF11-206ENST00000533018 TTC21BQ7Z4L5 1316 aa25.31■■□□□ 1.64
PCF11-206ENST00000533018 AKAP12Q02952 1782 aa25.31■■□□□ 1.64
PCF11-206ENST00000533018 SLIT3O75094 1523 aa25.3■■□□□ 1.64
PCF11-206ENST00000533018 KTN1Q86UP2 1357 aaKnown RBP25.3■■□□□ 1.64
PCF11-206ENST00000533018 TNS1Q9HBL0 1735 aaKnown RBP25.29■■□□□ 1.64
PCF11-206ENST00000533018 KCNH5Q8NCM2 988 aa25.28■■□□□ 1.64
PCF11-206ENST00000533018 AATKQ6ZMQ8 1374 aa25.28■■□□□ 1.64
PCF11-206ENST00000533018 CRB1P82279 1406 aa25.28■■□□□ 1.64
PCF11-206ENST00000533018 APBA3O96018 575 aa25.27■■□□□ 1.64
PCF11-206ENST00000533018 TOM1L2Q6ZVM7 507 aa25.27■■□□□ 1.64
PCF11-206ENST00000533018 TMC1Q8TDI8 760 aa25.27■■□□□ 1.64
PCF11-206ENST00000533018 TTC21AQ8NDW8 1320 aa25.27■■□□□ 1.64
PCF11-206ENST00000533018 EZH2Q15910 746 aaKnown RBP25.26■■□□□ 1.63
PCF11-206ENST00000533018 SUGP2Q8IX01 1082 aaKnown RBP eCLIP25.24■■□□□ 1.63
PCF11-206ENST00000533018 DISP2A7MBM2 1401 aa25.23■■□□□ 1.63
PCF11-206ENST00000533018 CPSF1Q10570 1443 aaKnown RBP25.23■■□□□ 1.63
PCF11-206ENST00000533018 SBNO2Q9Y2G9 1366 aa25.23■■□□□ 1.63
PCF11-206ENST00000533018 AXIN2Q9Y2T1 843 aa25.23■■□□□ 1.63
PCF11-206ENST00000533018 CSB-PGBD3P0DP91 1061 aa25.22■■□□□ 1.63
PCF11-206ENST00000533018 PARP4Q9UKK3 1724 aaKnown RBP25.22■■□□□ 1.63
PCF11-206ENST00000533018 COL18A1P39060 1754 aa25.21■■□□□ 1.63
PCF11-206ENST00000533018 RGPD5Q99666 1765 aa25.21■■□□□ 1.63
PCF11-206ENST00000533018 TRIM26Q12899 539 aaPredicted RBP25.21■■□□□ 1.63
PCF11-206ENST00000533018 R3HDM1Q15032 1099 aaKnown RBP25.21■■□□□ 1.63
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms