RNA–Protein interactions for RNA: ENST00000532542.1

TRIM3-211, Transcript of tripartite motif containing 3, humanhuman

TSL 2

Gene TRIM3, Length 4,419 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM3-211ENST00000532542 TBX22Q9Y458 520 aa14.1□□□□□ -0.15
TRIM3-211ENST00000532542 BLMP54132 1417 aaPredicted RBP14.1□□□□□ -0.15
TRIM3-211ENST00000532542 BCAR3O75815 825 aa14.1□□□□□ -0.15
TRIM3-211ENST00000532542 STK31Q9BXU1 1019 aa14.1□□□□□ -0.15
TRIM3-211ENST00000532542 DIP2BQ9P265 1576 aa14.1□□□□□ -0.15
TRIM3-211ENST00000532542 SETBP1Q9Y6X0 1596 aa14.1□□□□□ -0.15
TRIM3-211ENST00000532542 DDX19BQ9UMR2 479 aa14.1□□□□□ -0.15
TRIM3-211ENST00000532542 ELL2O00472 640 aaPredicted RBP14.09□□□□□ -0.15
TRIM3-211ENST00000532542 EXOSC9Q06265 439 aaKnown RBP14.09□□□□□ -0.15
TRIM3-211ENST00000532542 PROSER2Q86WR7 435 aaPredicted RBP14.09□□□□□ -0.15
TRIM3-211ENST00000532542 AGLP35573 1532 aa14.09□□□□□ -0.15
TRIM3-211ENST00000532542 ESCO1Q5FWF5 840 aa14.09□□□□□ -0.15
TRIM3-211ENST00000532542 ZC3H13Q5T200 1668 aaKnown RBP14.08□□□□□ -0.16
TRIM3-211ENST00000532542 FRMPD1Q5SYB0 1578 aa14.08□□□□□ -0.16
TRIM3-211ENST00000532542 EIF5BO60841 1220 aaKnown RBP14.08□□□□□ -0.16
TRIM3-211ENST00000532542 PANK1Q8TE04 598 aa14.08□□□□□ -0.16
TRIM3-211ENST00000532542 EMILIN1Q9Y6C2 1016 aa14.08□□□□□ -0.16
TRIM3-211ENST00000532542 ACEP12821 1306 aa14.08□□□□□ -0.16
TRIM3-211ENST00000532542 ATF3P18847 181 aa14.08□□□□□ -0.16
TRIM3-211ENST00000532542 BECN1Q14457 450 aa14.08□□□□□ -0.16
TRIM3-211ENST00000532542 NFE2L2Q16236 605 aa14.08□□□□□ -0.16
TRIM3-211ENST00000532542 NUTM2GQ5VZR2 741 aa14.08□□□□□ -0.16
TRIM3-211ENST00000532542 SULT6B1Q6IMI4 303 aa14.08□□□□□ -0.16
TRIM3-211ENST00000532542 TSR2Q969E8 191 aaKnown RBP14.08□□□□□ -0.16
TRIM3-211ENST00000532542 KIAA1210Q9ULL0 1709 aa14.07□□□□□ -0.16
TRIM3-211ENST00000532542 PLEKHH1Q9ULM0 1364 aa14.07□□□□□ -0.16
TRIM3-211ENST00000532542 CSB-PGBD3P0DP91 1061 aa14.06□□□□□ -0.16
TRIM3-211ENST00000532542 CCDC27Q2M243 656 aa14.06□□□□□ -0.16
TRIM3-211ENST00000532542 NOP58Q9Y2X3 529 aaKnown RBP14.06□□□□□ -0.16
TRIM3-211ENST00000532542 MROH1Q8NDA8 1641 aa14.06□□□□□ -0.16
TRIM3-211ENST00000532542 ZMYM4Q5VZL5 1548 aa14.05□□□□□ -0.16
TRIM3-211ENST00000532542 API5Q9BZZ5 524 aaKnown RBP14.05□□□□□ -0.16
TRIM3-211ENST00000532542 A2ML1A8K2U0 1454 aa14.05□□□□□ -0.16
TRIM3-211ENST00000532542 PDE4AP27815 886 aa14.05□□□□□ -0.16
TRIM3-211ENST00000532542 GAS2L2Q8NHY3 880 aa14.05□□□□□ -0.16
TRIM3-211ENST00000532542 ZNF428Q96B54 188 aa14.05□□□□□ -0.16
TRIM3-211ENST00000532542 NRXN1Q9ULB1 1477 aa14.05□□□□□ -0.16
TRIM3-211ENST00000532542 TTC21BQ7Z4L5 1316 aa14.04□□□□□ -0.16
TRIM3-211ENST00000532542 NLRP1Q9C000 1473 aa14.03□□□□□ -0.16
TRIM3-211ENST00000532542 EDC4Q6P2E9 1401 aaKnown RBP14.03□□□□□ -0.16
TRIM3-211ENST00000532542 TTC21AQ8NDW8 1320 aa14.03□□□□□ -0.16
TRIM3-211ENST00000532542 POLKQ9UBT6 870 aa14.03□□□□□ -0.16
TRIM3-211ENST00000532542 LTKP29376 864 aa14.03□□□□□ -0.16
TRIM3-211ENST00000532542 ANP32EQ9BTT0 268 aa14.03□□□□□ -0.16
TRIM3-211ENST00000532542 FANCIQ9NVI1 1328 aa14.02□□□□□ -0.16
TRIM3-211ENST00000532542 HSP90AA1P07900 732 aaKnown RBP14.02□□□□□ -0.16
TRIM3-211ENST00000532542 RARSP54136 660 aaKnown RBP14.02□□□□□ -0.16
TRIM3-211ENST00000532542 PHF8Q9UPP1 1060 aa14.02□□□□□ -0.16
TRIM3-211ENST00000532542 METP08581 1390 aa14.02□□□□□ -0.16
TRIM3-211ENST00000532542 RNF123Q5XPI4 1314 aa14.02□□□□□ -0.16
TRIM3-211ENST00000532542 IL16Q14005 1332 aa14.02□□□□□ -0.17
TRIM3-211ENST00000532542 IQGAP1P46940 1657 aa14.02□□□□□ -0.17
TRIM3-211ENST00000532542 FAM161AQ3B820 660 aa14.01□□□□□ -0.17
TRIM3-211ENST00000532542 PLEKHG1Q9ULL1 1385 aa14.01□□□□□ -0.17
TRIM3-211ENST00000532542 TSPYL4Q9UJ04 414 aa14.01□□□□□ -0.17
TRIM3-211ENST00000532542 NEXMIFQ5QGS0 1516 aa14.01□□□□□ -0.17
TRIM3-211ENST00000532542 C1orf141Q5JVX7 400 aa14.01□□□□□ -0.17
TRIM3-211ENST00000532542 CASC1Q6TDU7 716 aa14□□□□□ -0.17
TRIM3-211ENST00000532542 TWISTNBQ3B726 338 aaPredicted RBP14□□□□□ -0.17
TRIM3-211ENST00000532542 C20orf194Q5TEA3 1177 aa14□□□□□ -0.17
TRIM3-211ENST00000532542 TEFQ10587 303 aa14□□□□□ -0.17
TRIM3-211ENST00000532542 NCBP3Q53F19 620 aaKnown RBP13.99□□□□□ -0.17
TRIM3-211ENST00000532542 FBLN1P23142 703 aa13.99□□□□□ -0.17
TRIM3-211ENST00000532542 ATF7IPQ6VMQ6 1270 aa13.99□□□□□ -0.17
TRIM3-211ENST00000532542 IPO9Q96P70 1041 aaKnown RBP13.99□□□□□ -0.17
TRIM3-211ENST00000532542 HMMRO75330 724 aa13.99□□□□□ -0.17
TRIM3-211ENST00000532542 CFAP44Q96MT7 982 aa13.99□□□□□ -0.17
TRIM3-211ENST00000532542 ALKQ9UM73 1620 aa13.99□□□□□ -0.17
TRIM3-211ENST00000532542 ARHGEF40Q8TER5 1519 aa13.98□□□□□ -0.17
TRIM3-211ENST00000532542 RICTORQ6R327 1708 aa13.98□□□□□ -0.17
TRIM3-211ENST00000532542 FAM135BQ49AJ0 1406 aa13.98□□□□□ -0.17
TRIM3-211ENST00000532542 NBR1Q14596 966 aa13.98□□□□□ -0.17
TRIM3-211ENST00000532542 KCNH5Q8NCM2 988 aa13.98□□□□□ -0.17
TRIM3-211ENST00000532542 IFT57Q9NWB7 429 aa13.98□□□□□ -0.17
TRIM3-211ENST00000532542 SLC4A10Q6U841 1118 aa13.98□□□□□ -0.17
TRIM3-211ENST00000532542 NCKAP5LQ9HCH0 1330 aa13.98□□□□□ -0.17
TRIM3-211ENST00000532542 KCNA6P17658 529 aa13.98□□□□□ -0.17
TRIM3-211ENST00000532542 NOB1Q9ULX3 412 aaKnown RBP13.98□□□□□ -0.17
TRIM3-211ENST00000532542 MVPQ14764 893 aaKnown RBP13.97□□□□□ -0.17
TRIM3-211ENST00000532542 CLTCQ00610 1675 aaKnown RBP13.97□□□□□ -0.17
TRIM3-211ENST00000532542 ZRANB1Q9UGI0 708 aa13.97□□□□□ -0.17
TRIM3-211ENST00000532542 QRICH2Q9H0J4 1663 aa13.97□□□□□ -0.17
TRIM3-211ENST00000532542 ATP7BP35670 1465 aa13.97□□□□□ -0.17
TRIM3-211ENST00000532542 PLEKHG3A1L390 1219 aa13.96□□□□□ -0.17
TRIM3-211ENST00000532542 PIK3C2BO00750 1634 aa13.96□□□□□ -0.17
TRIM3-211ENST00000532542 ALDH1L2Q3SY69 923 aa13.96□□□□□ -0.17
TRIM3-211ENST00000532542 PREX1Q8TCU6 1659 aa13.96□□□□□ -0.18
TRIM3-211ENST00000532542 THUMPD2Q9BTF0 503 aaKnown RBP13.95□□□□□ -0.18
TRIM3-211ENST00000532542 SSH1Q8WYL5 1049 aa13.95□□□□□ -0.18
TRIM3-211ENST00000532542 MROH2AA6NES4 1674 aa13.94□□□□□ -0.18
TRIM3-211ENST00000532542 ADGRB1O14514 1584 aa13.94□□□□□ -0.18
TRIM3-211ENST00000532542 HDAC5Q9UQL6 1122 aa13.94□□□□□ -0.18
TRIM3-211ENST00000532542 RBM33Q96EV2 1170 aaKnown RBP13.93□□□□□ -0.18
TRIM3-211ENST00000532542 SPINK5Q9NQ38 1064 aaPredicted RBP13.93□□□□□ -0.18
TRIM3-211ENST00000532542 PLEKHO1Q53GL0 409 aaPredicted RBP13.93□□□□□ -0.18
TRIM3-211ENST00000532542 RAPGEF4Q8WZA2 1011 aa13.93□□□□□ -0.18
TRIM3-211ENST00000532542 PPLO60437 1756 aa13.93□□□□□ -0.18
TRIM3-211ENST00000532542 HSP90AB2PQ58FF8 381 aa13.92□□□□□ -0.18
TRIM3-211ENST00000532542 ROBO2Q9HCK4 1378 aa13.92□□□□□ -0.18
TRIM3-211ENST00000532542 FOXO3O43524 673 aa13.92□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms