RNA–Protein interactions for RNA: ENST00000532088.1

COPB1-208, Transcript of coatomer protein complex subunit beta 1, humanhuman

TSL 3

Gene COPB1, Length 510 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPB1-208ENST00000532088 RBM33Q96EV2 1170 aaKnown RBP17.43■□□□□ 0.38
COPB1-208ENST00000532088 HIRIP3Q9BW71 556 aaPredicted RBP17.43■□□□□ 0.38
COPB1-208ENST00000532088 CDK19Q9BWU1 502 aa17.43■□□□□ 0.38
COPB1-208ENST00000532088 ATF3P18847 181 aa17.42■□□□□ 0.38
COPB1-208ENST00000532088 NINLQ9Y2I6 1382 aa17.41■□□□□ 0.38
COPB1-208ENST00000532088 MST1RQ04912 1400 aa17.4■□□□□ 0.38
COPB1-208ENST00000532088 ATP7BP35670 1465 aa17.4■□□□□ 0.38
COPB1-208ENST00000532088 CERKQ8TCT0 537 aa17.4■□□□□ 0.38
COPB1-208ENST00000532088 SRPK2P78362 688 aaKnown RBP17.39■□□□□ 0.37
COPB1-208ENST00000532088 TOPAZ1Q8N9V7 1692 aa17.39■□□□□ 0.37
COPB1-208ENST00000532088 ITSN1Q15811 1721 aa17.38■□□□□ 0.37
COPB1-208ENST00000532088 C1orf167Q5SNV9 1468 aa17.38■□□□□ 0.37
COPB1-208ENST00000532088 ECM2O94769 699 aaPredicted RBP17.38■□□□□ 0.37
COPB1-208ENST00000532088 CCDC61Q9Y6R9 512 aa17.38■□□□□ 0.37
COPB1-208ENST00000532088 USP32Q8NFA0 1604 aa17.38■□□□□ 0.37
COPB1-208ENST00000532088 CCDC7Q96M83 1385 aa17.38■□□□□ 0.37
COPB1-208ENST00000532088 ZNF316A6NFI3 1004 aaPredicted RBP17.37■□□□□ 0.37
COPB1-208ENST00000532088 NUDT16Q96DE0 195 aaKnown RBP17.37■□□□□ 0.37
COPB1-208ENST00000532088 CABP2Q9NPB3 220 aa17.37■□□□□ 0.37
COPB1-208ENST00000532088 C11orf95C9JLR9 678 aaPredicted RBP17.36■□□□□ 0.37
COPB1-208ENST00000532088 TSPYL2Q9H2G4 693 aaPredicted RBP17.36■□□□□ 0.37
COPB1-208ENST00000532088 KIF7Q2M1P5 1343 aa17.36■□□□□ 0.37
COPB1-208ENST00000532088 PRR36Q9H6K5 1346 aa17.36■□□□□ 0.37
COPB1-208ENST00000532088 WASHC2AQ641Q2 1341 aa17.35■□□□□ 0.37
COPB1-208ENST00000532088 PLEKHG3A1L390 1219 aa17.34■□□□□ 0.37
COPB1-208ENST00000532088 TOM1O60784 492 aa17.34■□□□□ 0.37
COPB1-208ENST00000532088 KIF1AQ12756 1690 aa17.34■□□□□ 0.37
COPB1-208ENST00000532088 SLAIN2Q9P270 581 aa17.34■□□□□ 0.37
COPB1-208ENST00000532088 PPIP5K1Q6PFW1 1433 aa17.32■□□□□ 0.36
COPB1-208ENST00000532088 C19orf67A6NJJ6 358 aa17.32■□□□□ 0.36
COPB1-208ENST00000532088 PAK3O75914 559 aaPredicted RBP17.32■□□□□ 0.36
COPB1-208ENST00000532088 MYOM1P52179 1685 aa17.32■□□□□ 0.36
COPB1-208ENST00000532088 POLR3AO14802 1390 aaPredicted RBP17.31■□□□□ 0.36
COPB1-208ENST00000532088 CD44P16070 742 aaKnown RBP17.31■□□□□ 0.36
COPB1-208ENST00000532088 RGPD8O14715 1765 aaPredicted RBP17.3■□□□□ 0.36
COPB1-208ENST00000532088 CHRM1P11229 460 aaPredicted RBP17.3■□□□□ 0.36
COPB1-208ENST00000532088 PHF8Q9UPP1 1060 aa17.3■□□□□ 0.36
COPB1-208ENST00000532088 BRD4O60885 1362 aaPredicted RBP17.29■□□□□ 0.36
COPB1-208ENST00000532088 ANKRD36BQ8N2N9 1353 aa17.29■□□□□ 0.36
COPB1-208ENST00000532088 ESCO1Q5FWF5 840 aa17.29■□□□□ 0.36
COPB1-208ENST00000532088 CPSF1Q10570 1443 aaKnown RBP17.29■□□□□ 0.36
COPB1-208ENST00000532088 NUTM2FA1L443 756 aa17.28■□□□□ 0.36
COPB1-208ENST00000532088 CABP1Q9NZU7 370 aa17.28■□□□□ 0.36
COPB1-208ENST00000532088 CD163L1Q9NR16 1453 aa17.27■□□□□ 0.36
COPB1-208ENST00000532088 BRINP3Q76B58 766 aa17.27■□□□□ 0.36
COPB1-208ENST00000532088 SLC12A5Q9H2X9 1139 aa17.27■□□□□ 0.36
COPB1-208ENST00000532088 TERF2IPQ9NYB0 399 aa17.27■□□□□ 0.36
COPB1-208ENST00000532088 UBAP1LF5GYI3 381 aa17.26■□□□□ 0.35
COPB1-208ENST00000532088 TMC1Q8TDI8 760 aa17.26■□□□□ 0.35
COPB1-208ENST00000532088 ORAI2Q96SN7 254 aa17.26■□□□□ 0.35
COPB1-208ENST00000532088 AKAP12Q02952 1782 aa17.25■□□□□ 0.35
COPB1-208ENST00000532088 HDGFL2Q7Z4V5 671 aaPredicted RBP17.25■□□□□ 0.35
COPB1-208ENST00000532088 ACEP12821 1306 aa17.24■□□□□ 0.35
COPB1-208ENST00000532088 NPHP3Q7Z494 1330 aa17.24■□□□□ 0.35
COPB1-208ENST00000532088 ROBO1Q9Y6N7 1651 aa17.24■□□□□ 0.35
COPB1-208ENST00000532088 POLR3GLQ9BT43 218 aa17.24■□□□□ 0.35
COPB1-208ENST00000532088 NHSL1Q5SYE7 1610 aa17.24■□□□□ 0.35
COPB1-208ENST00000532088 AHDC1Q5TGY3 1603 aaPredicted RBP17.24■□□□□ 0.35
COPB1-208ENST00000532088 MON2Q7Z3U7 1717 aa17.24■□□□□ 0.35
COPB1-208ENST00000532088 NGDNQ8NEJ9 315 aaKnown RBP17.23■□□□□ 0.35
COPB1-208ENST00000532088 ZRANB1Q9UGI0 708 aa17.23■□□□□ 0.35
COPB1-208ENST00000532088 A0A1W2PP64 1363 aa17.23■□□□□ 0.35
COPB1-208ENST00000532088 USP6P35125 1406 aa17.22■□□□□ 0.35
COPB1-208ENST00000532088 RGL2O15211 777 aa17.22■□□□□ 0.35
COPB1-208ENST00000532088 PYGBP11216 843 aa17.22■□□□□ 0.35
COPB1-208ENST00000532088 PMFBP1Q8TBY8 1022 aa17.22■□□□□ 0.35
COPB1-208ENST00000532088 EDC4Q6P2E9 1401 aaKnown RBP17.21■□□□□ 0.35
COPB1-208ENST00000532088 SSH2Q76I76 1423 aa17.21■□□□□ 0.35
COPB1-208ENST00000532088 KTN1Q86UP2 1357 aaKnown RBP17.21■□□□□ 0.35
COPB1-208ENST00000532088 NRKQ7Z2Y5 1582 aa17.2■□□□□ 0.34
COPB1-208ENST00000532088 SBNO1A3KN83 1393 aa17.2■□□□□ 0.34
COPB1-208ENST00000532088 PSME1Q06323 249 aa17.2■□□□□ 0.34
COPB1-208ENST00000532088 PANK3Q9H999 370 aa17.2■□□□□ 0.34
COPB1-208ENST00000532088 SOS2Q07890 1332 aaPredicted RBP17.2■□□□□ 0.34
COPB1-208ENST00000532088 PXDNQ92626 1479 aa17.19■□□□□ 0.34
COPB1-208ENST00000532088 HAX1O00165 279 aa17.19■□□□□ 0.34
COPB1-208ENST00000532088 FOXO3O43524 673 aa17.19■□□□□ 0.34
COPB1-208ENST00000532088 TTC21AQ8NDW8 1320 aa17.19■□□□□ 0.34
COPB1-208ENST00000532088 KRT28Q7Z3Y7 464 aa17.17■□□□□ 0.34
COPB1-208ENST00000532088 TRPM3Q9HCF6 1732 aaPredicted RBP17.17■□□□□ 0.34
COPB1-208ENST00000532088 NPC1L1Q9UHC9 1359 aa17.16■□□□□ 0.34
COPB1-208ENST00000532088 NSD3Q9BZ95 1437 aa17.16■□□□□ 0.34
COPB1-208ENST00000532088 PER1O15534 1290 aaPredicted RBP17.16■□□□□ 0.34
COPB1-208ENST00000532088 RNF25Q96BH1 459 aaPredicted RBP17.16■□□□□ 0.34
COPB1-208ENST00000532088 CARD14Q9BXL6 1004 aa17.16■□□□□ 0.34
COPB1-208ENST00000532088 PIP4K2BP78356 416 aa17.15■□□□□ 0.34
COPB1-208ENST00000532088 DDX10Q13206 875 aaKnown RBP17.15■□□□□ 0.34
COPB1-208ENST00000532088 TTC21BQ7Z4L5 1316 aa17.15■□□□□ 0.34
COPB1-208ENST00000532088 NSD2O96028 1365 aa17.15■□□□□ 0.34
COPB1-208ENST00000532088 KNSTRNQ9Y448 316 aa17.14■□□□□ 0.33
COPB1-208ENST00000532088 USP54Q70EL1 1684 aa17.13■□□□□ 0.33
COPB1-208ENST00000532088 TNS3Q68CZ2 1445 aa17.13■□□□□ 0.33
COPB1-208ENST00000532088 ZNF579Q8NAF0 562 aaKnown RBP17.13■□□□□ 0.33
COPB1-208ENST00000532088 CGNL1Q0VF96 1302 aa17.13■□□□□ 0.33
COPB1-208ENST00000532088 SPATA31A3Q5VYP0 1347 aa17.13■□□□□ 0.33
COPB1-208ENST00000532088 COL16A1Q07092 1604 aaPredicted RBP17.13■□□□□ 0.33
COPB1-208ENST00000532088 ALS2Q96Q42 1657 aa17.13■□□□□ 0.33
COPB1-208ENST00000532088 ARHGEF10O15013 1369 aa17.13■□□□□ 0.33
COPB1-208ENST00000532088 PHLPP1O60346 1717 aa17.13■□□□□ 0.33
COPB1-208ENST00000532088 USP31Q70CQ4 1352 aa17.12■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms