RNA–Protein interactions for RNA: ENST00000528930.5

SSBP3-212, Transcript of single stranded DNA binding protein 3, humanhuman

TSL 1 (best)

Gene SSBP3, Length 862 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP3-212ENST00000528930 UNC5CLQ8IV45 518 aa13.2□□□□□ -0.3
SSBP3-212ENST00000528930 C1orf167Q5SNV9 1468 aa13.2□□□□□ -0.3
SSBP3-212ENST00000528930 UTRNP46939 3433 aa13.2□□□□□ -0.3
SSBP3-212ENST00000528930 MAMSTRQ6ZN01 415 aa13.19□□□□□ -0.3
SSBP3-212ENST00000528930 PLCD3Q8N3E9 789 aa13.19□□□□□ -0.3
SSBP3-212ENST00000528930 MYOM3Q5VTT5 1437 aa13.19□□□□□ -0.3
SSBP3-212ENST00000528930 FAM163AQ96GL9 167 aaPredicted RBP13.18□□□□□ -0.3
SSBP3-212ENST00000528930 ERBINQ96RT1 1412 aa13.17□□□□□ -0.3
SSBP3-212ENST00000528930 NRKQ7Z2Y5 1582 aa13.16□□□□□ -0.3
SSBP3-212ENST00000528930 MYOM1P52179 1685 aa13.16□□□□□ -0.3
SSBP3-212ENST00000528930 TSPY4P0CV99 314 aa13.16□□□□□ -0.3
SSBP3-212ENST00000528930 TSPY10P0CW01 314 aa13.16□□□□□ -0.3
SSBP3-212ENST00000528930 SCUBE2Q9NQ36 999 aa13.16□□□□□ -0.3
SSBP3-212ENST00000528930 AMOTL2Q9Y2J4 779 aa13.16□□□□□ -0.3
SSBP3-212ENST00000528930 CASZ1Q86V15 1759 aa13.16□□□□□ -0.3
SSBP3-212ENST00000528930 PXDNQ92626 1479 aa13.16□□□□□ -0.3
SSBP3-212ENST00000528930 TIE1P35590 1138 aa13.15□□□□□ -0.3
SSBP3-212ENST00000528930 LCE2DQ5TA82 110 aaPredicted RBP13.15□□□□□ -0.3
SSBP3-212ENST00000528930 SLC52A1Q9NWF4 448 aa13.15□□□□□ -0.3
SSBP3-212ENST00000528930 PPP1R1BQ9UD71 204 aaPredicted RBP13.15□□□□□ -0.3
SSBP3-212ENST00000528930 NRAPQ86VF7 1730 aa13.15□□□□□ -0.3
SSBP3-212ENST00000528930 PARD3Q8TEW0 1356 aa13.15□□□□□ -0.3
SSBP3-212ENST00000528930 TTLL13PA6NNM8 815 aa13.14□□□□□ -0.31
SSBP3-212ENST00000528930 SPON1Q9HCB6 807 aa13.14□□□□□ -0.31
SSBP3-212ENST00000528930 COLQQ9Y215 455 aaPredicted RBP13.14□□□□□ -0.31
SSBP3-212ENST00000528930 CROCC2H7BZ55 1655 aa13.14□□□□□ -0.31
SSBP3-212ENST00000528930 ABCA3Q99758 1704 aa13.13□□□□□ -0.31
SSBP3-212ENST00000528930 SHANK3Q9BYB0 1731 aa13.13□□□□□ -0.31
SSBP3-212ENST00000528930 GIGYF1O75420 1035 aaPredicted RBP13.13□□□□□ -0.31
SSBP3-212ENST00000528930 EZH2Q15910 746 aaKnown RBP13.13□□□□□ -0.31
SSBP3-212ENST00000528930 THSD7AQ9UPZ6 1657 aa13.12□□□□□ -0.31
SSBP3-212ENST00000528930 HDGFP51858 240 aaKnown RBP13.12□□□□□ -0.31
SSBP3-212ENST00000528930 VPS72Q15906 364 aa13.12□□□□□ -0.31
SSBP3-212ENST00000528930 CAMKK2Q96RR4 588 aa13.12□□□□□ -0.31
SSBP3-212ENST00000528930 KCNQ2O43526 872 aa13.11□□□□□ -0.31
SSBP3-212ENST00000528930 PCDHB13Q9Y5F0 798 aa13.1□□□□□ -0.31
SSBP3-212ENST00000528930 ADGRL2O95490 1459 aa13.1□□□□□ -0.31
SSBP3-212ENST00000528930 KANK1Q14678 1352 aa13.09□□□□□ -0.31
SSBP3-212ENST00000528930 SEC24BO95487 1268 aa13.09□□□□□ -0.31
SSBP3-212ENST00000528930 ABCF1Q8NE71 845 aaKnown RBP eCLIP13.09□□□□□ -0.31
SSBP3-212ENST00000528930 IQGAP3Q86VI3 1631 aa13.09□□□□□ -0.31
SSBP3-212ENST00000528930 NUBP1P53384 320 aa13.08□□□□□ -0.32
SSBP3-212ENST00000528930 ORAI2Q96SN7 254 aa13.08□□□□□ -0.32
SSBP3-212ENST00000528930 NEXMIFQ5QGS0 1516 aa13.08□□□□□ -0.32
SSBP3-212ENST00000528930 ABCC5O15440 1437 aa13.07□□□□□ -0.32
SSBP3-212ENST00000528930 TRIM35Q9UPQ4 493 aa13.07□□□□□ -0.32
SSBP3-212ENST00000528930 RGPD3A6NKT7 1758 aaPredicted RBP13.06□□□□□ -0.32
SSBP3-212ENST00000528930 RGPD4Q7Z3J3 1758 aa13.06□□□□□ -0.32
SSBP3-212ENST00000528930 KIF15Q9NS87 1388 aa13.06□□□□□ -0.32
SSBP3-212ENST00000528930 PCDH10Q9P2E7 1040 aa13.05□□□□□ -0.32
SSBP3-212ENST00000528930 DAPK1P53355 1430 aa13.05□□□□□ -0.32
SSBP3-212ENST00000528930 DLC1Q96QB1 1528 aa13.03□□□□□ -0.32
SSBP3-212ENST00000528930 IFNL1Q8IU54 200 aa13.03□□□□□ -0.32
SSBP3-212ENST00000528930 NPHP3Q7Z494 1330 aa13.03□□□□□ -0.32
SSBP3-212ENST00000528930 FKBP8Q14318 412 aa13.01□□□□□ -0.33
SSBP3-212ENST00000528930 PPARGC1BQ86YN6 1023 aaKnown RBP13.01□□□□□ -0.33
SSBP3-212ENST00000528930 CDC42BPGQ6DT37 1551 aa13.01□□□□□ -0.33
SSBP3-212ENST00000528930 METP08581 1390 aa13□□□□□ -0.33
SSBP3-212ENST00000528930 FAM182BQ5T319 152 aa13□□□□□ -0.33
SSBP3-212ENST00000528930 FAM50AQ14320 339 aaKnown RBP12.99□□□□□ -0.33
SSBP3-212ENST00000528930 NBPF8Q3BBV2 869 aa12.99□□□□□ -0.33
SSBP3-212ENST00000528930 NBPF14Q5TI25 921 aa12.99□□□□□ -0.33
SSBP3-212ENST00000528930 SGIP1Q9BQI5 828 aa12.99□□□□□ -0.33
SSBP3-212ENST00000528930 RRP7BPQ9NSQ0 103 aa12.99□□□□□ -0.33
SSBP3-212ENST00000528930 CHIC2Q9UKJ5 165 aa12.99□□□□□ -0.33
SSBP3-212ENST00000528930 PRAG1Q86YV5 1406 aa12.98□□□□□ -0.33
SSBP3-212ENST00000528930 HSPA6P17066 643 aa12.98□□□□□ -0.33
SSBP3-212ENST00000528930 ZBTB47Q9UFB7 747 aaPredicted RBP12.98□□□□□ -0.33
SSBP3-212ENST00000528930 KIF1AQ12756 1690 aa12.97□□□□□ -0.33
SSBP3-212ENST00000528930 PRELPP51888 382 aa12.97□□□□□ -0.33
SSBP3-212ENST00000528930 FAM98CQ17RN3 349 aaKnown RBP12.97□□□□□ -0.33
SSBP3-212ENST00000528930 TMEM106CQ9BVX2 250 aa12.97□□□□□ -0.33
SSBP3-212ENST00000528930 CCDC9Q9Y3X0 531 aaKnown RBP12.97□□□□□ -0.33
SSBP3-212ENST00000528930 ANKRD30AQ9BXX3 1397 aa12.96□□□□□ -0.33
SSBP3-212ENST00000528930 E9PCH4 1651 aa12.96□□□□□ -0.33
SSBP3-212ENST00000528930 A0A0G2JS52 829 aa12.96□□□□□ -0.33
SSBP3-212ENST00000528930 MYT1Q01538 1121 aa12.96□□□□□ -0.33
SSBP3-212ENST00000528930 COL14A1Q05707 1796 aaKnown RBP12.95□□□□□ -0.34
SSBP3-212ENST00000528930 TRIM37O94972 964 aa12.95□□□□□ -0.34
SSBP3-212ENST00000528930 PTGER2P43116 358 aa12.95□□□□□ -0.34
SSBP3-212ENST00000528930 FAM212AQ96EL1 285 aa12.95□□□□□ -0.34
SSBP3-212ENST00000528930 SYT17Q9BSW7 474 aa12.95□□□□□ -0.34
SSBP3-212ENST00000528930 APBA3O96018 575 aa12.94□□□□□ -0.34
SSBP3-212ENST00000528930 SPATA31A3Q5VYP0 1347 aa12.93□□□□□ -0.34
SSBP3-212ENST00000528930 IER5LQ5T953 404 aa12.93□□□□□ -0.34
SSBP3-212ENST00000528930 XPCQ01831 940 aaPredicted RBP12.92□□□□□ -0.34
SSBP3-212ENST00000528930 FHDC1Q9C0D6 1143 aaPredicted RBP12.92□□□□□ -0.34
SSBP3-212ENST00000528930 LRPPRCP42704 1394 aaKnown RBP12.92□□□□□ -0.34
SSBP3-212ENST00000528930 MAP3K5Q99683 1374 aa12.92□□□□□ -0.34
SSBP3-212ENST00000528930 SBF2Q86WG5 1849 aa12.91□□□□□ -0.34
SSBP3-212ENST00000528930 FAM83GA6ND36 823 aa12.91□□□□□ -0.34
SSBP3-212ENST00000528930 FAM196AQ6ZSG2 479 aa12.91□□□□□ -0.34
SSBP3-212ENST00000528930 FOXO3O43524 673 aa12.9□□□□□ -0.34
SSBP3-212ENST00000528930 COL13A1Q5TAT6 717 aaPredicted RBP12.9□□□□□ -0.34
SSBP3-212ENST00000528930 SLAIN1Q8ND83 568 aa12.9□□□□□ -0.34
SSBP3-212ENST00000528930 ROBO2Q9HCK4 1378 aa12.9□□□□□ -0.34
SSBP3-212ENST00000528930 CCDC144AA2RUR9 1427 aa12.89□□□□□ -0.35
SSBP3-212ENST00000528930 RRBP1Q9P2E9 1410 aaKnown RBP12.89□□□□□ -0.35
SSBP3-212ENST00000528930 FMN2Q9NZ56 1722 aa12.89□□□□□ -0.35
SSBP3-212ENST00000528930 PYGBP11216 843 aa12.89□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms