RNA–Protein interactions for RNA: ENST00000527326.1

CD44-225, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 718 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-225ENST00000527326 DMTNQ08495 405 aa7.5□□□□□ -1.21
CD44-225ENST00000527326 VPS8Q8N3P4 1428 aa7.5□□□□□ -1.21
CD44-225ENST00000527326 RNF223E7ERA6 249 aa7.49□□□□□ -1.21
CD44-225ENST00000527326 NEUROD2Q15784 382 aa7.49□□□□□ -1.21
CD44-225ENST00000527326 GPIHBP1Q8IV16 184 aa7.49□□□□□ -1.21
CD44-225ENST00000527326 NLRP7Q8WX94 980 aa7.49□□□□□ -1.21
CD44-225ENST00000527326 RDH13Q8NBN7 331 aa7.48□□□□□ -1.21
CD44-225ENST00000527326 ISY1Q9ULR0 285 aaKnown RBP7.48□□□□□ -1.21
CD44-225ENST00000527326 WDR97A6NE52 1622 aa7.48□□□□□ -1.21
CD44-225ENST00000527326 DDX11L8A8MPP1 907 aa7.47□□□□□ -1.21
CD44-225ENST00000527326 ESPNB1AK53 854 aa7.47□□□□□ -1.21
CD44-225ENST00000527326 S1PR4O95977 384 aa7.47□□□□□ -1.21
CD44-225ENST00000527326 SLC19A1P41440 591 aa7.47□□□□□ -1.21
CD44-225ENST00000527326 PUS10Q3MIT2 529 aaKnown RBP7.47□□□□□ -1.21
CD44-225ENST00000527326 SCUBE3Q8IX30 993 aa7.47□□□□□ -1.21
CD44-225ENST00000527326 GTPBP4Q9BZE4 634 aaKnown RBP7.47□□□□□ -1.21
CD44-225ENST00000527326 TMEM51Q9NW97 253 aa7.47□□□□□ -1.21
CD44-225ENST00000527326 PDZRN3Q9UPQ7 1066 aa7.47□□□□□ -1.21
CD44-225ENST00000527326 MAPKBP1O60336 1514 aa7.47□□□□□ -1.21
CD44-225ENST00000527326 GOLGA6L3A6NEY3 463 aa7.46□□□□□ -1.22
CD44-225ENST00000527326 NRG2O14511 850 aaPredicted RBP7.46□□□□□ -1.22
CD44-225ENST00000527326 PPEF1O14829 653 aaPredicted RBP7.46□□□□□ -1.22
CD44-225ENST00000527326 LETM1O95202 739 aaPredicted RBP7.46□□□□□ -1.22
CD44-225ENST00000527326 HSP90B1P14625 803 aaKnown RBP7.46□□□□□ -1.22
CD44-225ENST00000527326 DHX37Q8IY37 1157 aaKnown RBP7.46□□□□□ -1.22
CD44-225ENST00000527326 TRIM44Q96DX7 344 aaPredicted RBP7.46□□□□□ -1.22
CD44-225ENST00000527326 MRC2Q9UBG0 1479 aa7.45□□□□□ -1.22
CD44-225ENST00000527326 FSD2A1L4K1 749 aa7.45□□□□□ -1.22
CD44-225ENST00000527326 FRAT2O75474 233 aaPredicted RBP7.45□□□□□ -1.22
CD44-225ENST00000527326 ZMYND10O75800 440 aa7.45□□□□□ -1.22
CD44-225ENST00000527326 ADH1BP00325 375 aa7.45□□□□□ -1.22
CD44-225ENST00000527326 TRAF7Q6Q0C0 670 aa7.45□□□□□ -1.22
CD44-225ENST00000527326 PDZRN4Q6ZMN7 1036 aaPredicted RBP7.45□□□□□ -1.22
CD44-225ENST00000527326 WDR62O43379 1518 aa7.45□□□□□ -1.22
CD44-225ENST00000527326 ANKLE1Q8NAG6 615 aa7.44□□□□□ -1.22
CD44-225ENST00000527326 PHOX2BQ99453 314 aa7.44□□□□□ -1.22
CD44-225ENST00000527326 RRBP1Q9P2E9 1410 aaKnown RBP7.44□□□□□ -1.22
CD44-225ENST00000527326 CDK11BP21127 795 aaKnown RBP7.43□□□□□ -1.22
CD44-225ENST00000527326 MRE11P49959 708 aa7.43□□□□□ -1.22
CD44-225ENST00000527326 KIAA1211Q6ZU35 1233 aa7.43□□□□□ -1.22
CD44-225ENST00000527326 SLC6A16Q9GZN6 736 aa7.43□□□□□ -1.22
CD44-225ENST00000527326 ZHX1Q9UKY1 873 aaPredicted RBP7.43□□□□□ -1.22
CD44-225ENST00000527326 NUDCQ9Y266 331 aa7.43□□□□□ -1.22
CD44-225ENST00000527326 CLIP1P30622 1438 aa7.43□□□□□ -1.22
CD44-225ENST00000527326 XRCC6P12956 609 aaKnown RBP eCLIP7.42□□□□□ -1.22
CD44-225ENST00000527326 IRX3P78415 501 aaPredicted RBP7.42□□□□□ -1.22
CD44-225ENST00000527326 FUT2Q10981 343 aa7.42□□□□□ -1.22
CD44-225ENST00000527326 SULF1Q8IWU6 871 aa7.42□□□□□ -1.22
CD44-225ENST00000527326 SECISBP2LQ93073 1101 aaKnown RBP7.42□□□□□ -1.22
CD44-225ENST00000527326 EMID1Q96A84 441 aaPredicted RBP7.42□□□□□ -1.22
CD44-225ENST00000527326 ZNF830Q96NB3 372 aaPredicted RBP7.42□□□□□ -1.22
CD44-225ENST00000527326 SPSB2Q99619 263 aa7.42□□□□□ -1.22
CD44-225ENST00000527326 LCE2BO14633 110 aa7.41□□□□□ -1.22
CD44-225ENST00000527326 ATP6V1AP38606 617 aa7.41□□□□□ -1.22
CD44-225ENST00000527326 GCGRP47871 477 aa7.41□□□□□ -1.22
CD44-225ENST00000527326 SLC20A2Q08357 652 aa7.41□□□□□ -1.22
CD44-225ENST00000527326 SPRYD7Q5W111 196 aa7.41□□□□□ -1.22
CD44-225ENST00000527326 CADPSQ9ULU8 1353 aa7.41□□□□□ -1.22
CD44-225ENST00000527326 KIF21BO75037 1637 aa7.41□□□□□ -1.22
CD44-225ENST00000527326 OFD1O75665 1012 aa7.4□□□□□ -1.22
CD44-225ENST00000527326 MORN1Q5T089 497 aa7.4□□□□□ -1.22
CD44-225ENST00000527326 LIAT1Q6ZQX7 453 aa7.4□□□□□ -1.22
CD44-225ENST00000527326 MYH16Q9H6N6 1097 aa7.4□□□□□ -1.22
CD44-225ENST00000527326 POGKQ9P215 609 aa7.4□□□□□ -1.22
CD44-225ENST00000527326 PHLDB1Q86UU1 1377 aa7.4□□□□□ -1.22
CD44-225ENST00000527326 PRDM2Q13029 1718 aa7.4□□□□□ -1.23
CD44-225ENST00000527326 NCOA2Q15596 1464 aa7.39□□□□□ -1.23
CD44-225ENST00000527326 DYNC1I1O14576 645 aa7.39□□□□□ -1.23
CD44-225ENST00000527326 CLGNO14967 610 aa7.39□□□□□ -1.23
CD44-225ENST00000527326 RIPK4P57078 832 aa7.39□□□□□ -1.23
CD44-225ENST00000527326 BARGINQ6ZT62 677 aa7.39□□□□□ -1.23
CD44-225ENST00000527326 ZNF598Q86UK7 904 aaKnown RBP7.39□□□□□ -1.23
CD44-225ENST00000527326 RGS22Q8NE09 1264 aa7.39□□□□□ -1.23
CD44-225ENST00000527326 CCDC94Q9BW85 323 aaPredicted RBP7.39□□□□□ -1.23
CD44-225ENST00000527326 SLC27A5Q9Y2P5 690 aa7.39□□□□□ -1.23
CD44-225ENST00000527326 AKNAQ7Z591 1439 aa7.38□□□□□ -1.23
CD44-225ENST00000527326 PTMSP20962 102 aa7.38□□□□□ -1.23
CD44-225ENST00000527326 MAP2K5Q13163 448 aa7.38□□□□□ -1.23
CD44-225ENST00000527326 AXDND1Q5T1B0 1012 aaPredicted RBP7.38□□□□□ -1.23
CD44-225ENST00000527326 ZNF697Q5TEC3 545 aa7.38□□□□□ -1.23
CD44-225ENST00000527326 TRIM67Q6ZTA4 783 aa7.38□□□□□ -1.23
CD44-225ENST00000527326 SIN3AQ96ST3 1273 aa7.38□□□□□ -1.23
CD44-225ENST00000527326 FHAD1B1AJZ9 1412 aa7.37□□□□□ -1.23
CD44-225ENST00000527326 CNTLNQ9NXG0 1405 aa7.37□□□□□ -1.23
CD44-225ENST00000527326 FMNL1O95466 1100 aaPredicted RBP7.37□□□□□ -1.23
CD44-225ENST00000527326 ZSCAN20P17040 1043 aaPredicted RBP7.37□□□□□ -1.23
CD44-225ENST00000527326 UBTFP17480 764 aaKnown RBP7.37□□□□□ -1.23
CD44-225ENST00000527326 MMP14P50281 582 aa7.37□□□□□ -1.23
CD44-225ENST00000527326 DNTTIP2Q5QJE6 756 aaKnown RBP7.37□□□□□ -1.23
CD44-225ENST00000527326 MROH2BQ7Z745 1585 aa7.37□□□□□ -1.23
CD44-225ENST00000527326 IRF6O14896 467 aa7.36□□□□□ -1.23
CD44-225ENST00000527326 PLA2G2CQ5R387 149 aa7.36□□□□□ -1.23
CD44-225ENST00000527326 THAP11Q96EK4 314 aa7.36□□□□□ -1.23
CD44-225ENST00000527326 DNAJC2Q99543 621 aaKnown RBP7.36□□□□□ -1.23
CD44-225ENST00000527326 FAM13BQ9NYF5 915 aa7.36□□□□□ -1.23
CD44-225ENST00000527326 ABCC8Q09428 1581 aa7.36□□□□□ -1.23
CD44-225ENST00000527326 MINK1Q8N4C8 1332 aaPredicted RBP7.35□□□□□ -1.23
CD44-225ENST00000527326 MDM2Q00987 491 aaPredicted RBP7.35□□□□□ -1.23
CD44-225ENST00000527326 BECN1Q14457 450 aa7.35□□□□□ -1.23
CD44-225ENST00000527326 GRIPAP1Q4V328 841 aa7.35□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms