RNA–Protein interactions for RNA: ENST00000526977.5

VPS28-207, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,036 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-207ENST00000526977 ESCO1Q5FWF5 840 aa25.36■■□□□ 1.65
VPS28-207ENST00000526977 SUGP2Q8IX01 1082 aaKnown RBP eCLIP25.35■■□□□ 1.65
VPS28-207ENST00000526977 USP6P35125 1406 aa25.35■■□□□ 1.65
VPS28-207ENST00000526977 MON2Q7Z3U7 1717 aa25.34■■□□□ 1.65
VPS28-207ENST00000526977 PPP2R1AP30153 589 aa25.34■■□□□ 1.65
VPS28-207ENST00000526977 GGNBP2Q9H3C7 697 aa25.32■■□□□ 1.64
VPS28-207ENST00000526977 C1orf167Q5SNV9 1468 aa25.32■■□□□ 1.64
VPS28-207ENST00000526977 TTC21BQ7Z4L5 1316 aa25.31■■□□□ 1.64
VPS28-207ENST00000526977 XIRP1Q702N8 1843 aaKnown RBP25.3■■□□□ 1.64
VPS28-207ENST00000526977 TTC21AQ8NDW8 1320 aa25.3■■□□□ 1.64
VPS28-207ENST00000526977 MST1RQ04912 1400 aa25.29■■□□□ 1.64
VPS28-207ENST00000526977 SSH2Q76I76 1423 aa25.29■■□□□ 1.64
VPS28-207ENST00000526977 ORAI2Q96SN7 254 aa25.29■■□□□ 1.64
VPS28-207ENST00000526977 NME9Q86XW9 330 aa25.27■■□□□ 1.64
VPS28-207ENST00000526977 PSME1Q06323 249 aa25.25■■□□□ 1.63
VPS28-207ENST00000526977 KIF20BQ96Q89 1820 aa25.25■■□□□ 1.63
VPS28-207ENST00000526977 COG3Q96JB2 828 aa25.25■■□□□ 1.63
VPS28-207ENST00000526977 NRKQ7Z2Y5 1582 aa25.25■■□□□ 1.63
VPS28-207ENST00000526977 TNNT2P45379 298 aaPredicted RBP25.24■■□□□ 1.63
VPS28-207ENST00000526977 FKBP8Q14318 412 aa25.24■■□□□ 1.63
VPS28-207ENST00000526977 ANKRD26Q9UPS8 1709 aa25.23■■□□□ 1.63
VPS28-207ENST00000526977 FOXO3O43524 673 aa25.22■■□□□ 1.63
VPS28-207ENST00000526977 SLAIN2Q9P270 581 aa25.21■■□□□ 1.63
VPS28-207ENST00000526977 KIF1AQ12756 1690 aa25.21■■□□□ 1.63
VPS28-207ENST00000526977 LTBP4Q8N2S1 1624 aa25.2■■□□□ 1.63
VPS28-207ENST00000526977 NEFLP07196 543 aa25.19■■□□□ 1.62
VPS28-207ENST00000526977 PAK3O75914 559 aaPredicted RBP25.18■■□□□ 1.62
VPS28-207ENST00000526977 ZRANB1Q9UGI0 708 aa25.18■■□□□ 1.62
VPS28-207ENST00000526977 USP31Q70CQ4 1352 aa25.18■■□□□ 1.62
VPS28-207ENST00000526977 MTHFSP49914 203 aa25.17■■□□□ 1.62
VPS28-207ENST00000526977 ABTB2Q8N961 1025 aa25.16■■□□□ 1.62
VPS28-207ENST00000526977 OVOS2A0A0J9YW53 1432 aa25.15■■□□□ 1.62
VPS28-207ENST00000526977 OVOS2Q6IE36 1432 aa25.15■■□□□ 1.62
VPS28-207ENST00000526977 KRT28Q7Z3Y7 464 aa25.15■■□□□ 1.62
VPS28-207ENST00000526977 AATKQ6ZMQ8 1374 aa25.15■■□□□ 1.62
VPS28-207ENST00000526977 SENP3-EIF4A1A0A087X0R7 540 aa25.15■■□□□ 1.62
VPS28-207ENST00000526977 NPHP3Q7Z494 1330 aa25.14■■□□□ 1.62
VPS28-207ENST00000526977 CFAP53Q96M91 514 aa25.14■■□□□ 1.62
VPS28-207ENST00000526977 NLRP6P59044 892 aa25.13■■□□□ 1.61
VPS28-207ENST00000526977 BRINP3Q76B58 766 aa25.13■■□□□ 1.61
VPS28-207ENST00000526977 INSRP06213 1382 aa25.12■■□□□ 1.61
VPS28-207ENST00000526977 POLKQ9UBT6 870 aa25.1■■□□□ 1.61
VPS28-207ENST00000526977 SMG6Q86US8 1419 aaKnown RBP25.1■■□□□ 1.61
VPS28-207ENST00000526977 XPCQ01831 940 aaPredicted RBP25.09■■□□□ 1.61
VPS28-207ENST00000526977 PIK3C2AO00443 1686 aa25.09■■□□□ 1.61
VPS28-207ENST00000526977 WDR43Q15061 677 aaKnown RBP eCLIP25.08■■□□□ 1.61
VPS28-207ENST00000526977 SBNO1A3KN83 1393 aa25.06■■□□□ 1.6
VPS28-207ENST00000526977 FBLN1P23142 703 aa25.06■■□□□ 1.6
VPS28-207ENST00000526977 ADAMTS8Q9UP79 889 aa25.06■■□□□ 1.6
VPS28-207ENST00000526977 NUDCQ9Y266 331 aa25.06■■□□□ 1.6
VPS28-207ENST00000526977 NUTM2GQ5VZR2 741 aa25.05■■□□□ 1.6
VPS28-207ENST00000526977 PNPLA6Q8IY17 1366 aa25.05■■□□□ 1.6
VPS28-207ENST00000526977 BLMP54132 1417 aaPredicted RBP25.05■■□□□ 1.6
VPS28-207ENST00000526977 USP54Q70EL1 1684 aa25.05■■□□□ 1.6
VPS28-207ENST00000526977 DDX17Q92841 729 aaKnown RBP25.04■■□□□ 1.6
VPS28-207ENST00000526977 TRPM3Q9HCF6 1732 aaPredicted RBP25.04■■□□□ 1.6
VPS28-207ENST00000526977 PPM1GO15355 546 aaPredicted RBP25.02■■□□□ 1.6
VPS28-207ENST00000526977 RRS1Q15050 365 aaKnown RBP25.02■■□□□ 1.6
VPS28-207ENST00000526977 KCNH5Q8NCM2 988 aa25.02■■□□□ 1.6
VPS28-207ENST00000526977 EMILIN1Q9Y6C2 1016 aa25.02■■□□□ 1.6
VPS28-207ENST00000526977 MAP2P11137 1827 aaKnown RBP25.02■■□□□ 1.6
VPS28-207ENST00000526977 LMOD2Q6P5Q4 547 aa25.02■■□□□ 1.6
VPS28-207ENST00000526977 PXDNQ92626 1479 aa25.01■■□□□ 1.59
VPS28-207ENST00000526977 SOS2Q07890 1332 aaPredicted RBP25■■□□□ 1.59
VPS28-207ENST00000526977 SALL2Q9Y467 1007 aaPredicted RBP25■■□□□ 1.59
VPS28-207ENST00000526977 DIAPH1O60610 1272 aaKnown RBP24.99■■□□□ 1.59
VPS28-207ENST00000526977 CDK12Q9NYV4 1490 aaPredicted RBP24.99■■□□□ 1.59
VPS28-207ENST00000526977 SPATA31A3Q5VYP0 1347 aa24.99■■□□□ 1.59
VPS28-207ENST00000526977 SOX12O15370 315 aa24.98■■□□□ 1.59
VPS28-207ENST00000526977 TOM1O60784 492 aa24.98■■□□□ 1.59
VPS28-207ENST00000526977 IRX6P78412 446 aaPredicted RBP24.98■■□□□ 1.59
VPS28-207ENST00000526977 TNS3Q68CZ2 1445 aa24.97■■□□□ 1.59
VPS28-207ENST00000526977 COL3A1P02461 1466 aaPredicted RBP24.97■■□□□ 1.59
VPS28-207ENST00000526977 ARHGEF10O15013 1369 aa24.96■■□□□ 1.59
VPS28-207ENST00000526977 MARF1Q9Y4F3 1742 aaKnown RBP24.96■■□□□ 1.59
VPS28-207ENST00000526977 MAP3K19Q56UN5 1328 aa24.96■■□□□ 1.59
VPS28-207ENST00000526977 KIF24Q5T7B8 1368 aa24.96■■□□□ 1.59
VPS28-207ENST00000526977 PDE3BQ13370 1112 aa24.96■■□□□ 1.59
VPS28-207ENST00000526977 USP19O94966 1318 aa24.96■■□□□ 1.59
VPS28-207ENST00000526977 ALS2Q96Q42 1657 aa24.96■■□□□ 1.59
VPS28-207ENST00000526977 GCP02774 474 aa24.95■■□□□ 1.58
VPS28-207ENST00000526977 IQSEC2Q5JU85 1478 aa24.94■■□□□ 1.58
VPS28-207ENST00000526977 AMPHP49418 695 aa24.93■■□□□ 1.58
VPS28-207ENST00000526977 SHPRHQ149N8 1683 aa24.92■■□□□ 1.58
VPS28-207ENST00000526977 SLIT3O75094 1523 aa24.92■■□□□ 1.58
VPS28-207ENST00000526977 FLT4P35916 1363 aa24.92■■□□□ 1.58
VPS28-207ENST00000526977 U2AF1L5P0DN76 240 aaPredicted RBP24.91■■□□□ 1.58
VPS28-207ENST00000526977 U2AF1Q01081 240 aaKnown RBP eCLIP24.91■■□□□ 1.58
VPS28-207ENST00000526977 ERICH6BQ5W0A0 696 aa24.91■■□□□ 1.58
VPS28-207ENST00000526977 NHSL1Q5SYE7 1610 aa24.91■■□□□ 1.58
VPS28-207ENST00000526977 U2SURPO15042 1029 aaKnown RBP24.9■■□□□ 1.58
VPS28-207ENST00000526977 IL13P35225 146 aa24.9■■□□□ 1.58
VPS28-207ENST00000526977 RNF123Q5XPI4 1314 aa24.9■■□□□ 1.58
VPS28-207ENST00000526977 NFAT5O94916 1531 aa24.89■■□□□ 1.58
VPS28-207ENST00000526977 ROBO1Q9Y6N7 1651 aa24.89■■□□□ 1.57
VPS28-207ENST00000526977 HSP90AB2PQ58FF8 381 aa24.88■■□□□ 1.57
VPS28-207ENST00000526977 RTL1A6NKG5 1358 aa24.88■■□□□ 1.57
VPS28-207ENST00000526977 CDCA7LQ96GN5 454 aa24.88■■□□□ 1.57
VPS28-207ENST00000526977 CERKQ8TCT0 537 aa24.87■■□□□ 1.57
VPS28-207ENST00000526977 PNNQ9H307 717 aaKnown RBP24.87■■□□□ 1.57
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms