RNA–Protein interactions for RNA: ENST00000526000.5

CD44-221, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 722 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-221ENST00000526000 RGPD8O14715 1765 aaPredicted RBP9.63□□□□□ -0.87
CD44-221ENST00000526000 FMN2Q9NZ56 1722 aa9.62□□□□□ -0.87
CD44-221ENST00000526000 APBA3O96018 575 aa9.62□□□□□ -0.87
CD44-221ENST00000526000 USP32Q8NFA0 1604 aa9.61□□□□□ -0.87
CD44-221ENST00000526000 NBPF8Q3BBV2 869 aa9.61□□□□□ -0.87
CD44-221ENST00000526000 KIAA0232Q92628 1395 aa9.61□□□□□ -0.87
CD44-221ENST00000526000 BRWD3Q6RI45 1802 aa9.61□□□□□ -0.87
CD44-221ENST00000526000 PDE3BQ13370 1112 aa9.6□□□□□ -0.87
CD44-221ENST00000526000 NBPF1Q3BBV0 1214 aa9.6□□□□□ -0.87
CD44-221ENST00000526000 ABTB2Q8N961 1025 aa9.6□□□□□ -0.87
CD44-221ENST00000526000 MARF1Q9Y4F3 1742 aaKnown RBP9.59□□□□□ -0.87
CD44-221ENST00000526000 ACEP12821 1306 aa9.59□□□□□ -0.87
CD44-221ENST00000526000 SPATA31A1Q5TZJ5 1347 aa9.59□□□□□ -0.87
CD44-221ENST00000526000 ANKARQ7Z5J8 1434 aa9.59□□□□□ -0.87
CD44-221ENST00000526000 LARP1Q6PKG0 1096 aaKnown RBP9.59□□□□□ -0.87
CD44-221ENST00000526000 CAMKK2Q96RR4 588 aa9.59□□□□□ -0.87
CD44-221ENST00000526000 KIF1AQ12756 1690 aa9.58□□□□□ -0.88
CD44-221ENST00000526000 FAM196AQ6ZSG2 479 aa9.58□□□□□ -0.88
CD44-221ENST00000526000 CABP2Q9NPB3 220 aa9.58□□□□□ -0.88
CD44-221ENST00000526000 SRCAPQ6ZRS2 3230 aa9.58□□□□□ -0.88
CD44-221ENST00000526000 SRPK2P78362 688 aaKnown RBP9.57□□□□□ -0.88
CD44-221ENST00000526000 CCDC61Q9Y6R9 512 aa9.57□□□□□ -0.88
CD44-221ENST00000526000 KNDC1Q76NI1 1749 aa9.56□□□□□ -0.88
CD44-221ENST00000526000 IFT172Q9UG01 1749 aa9.56□□□□□ -0.88
CD44-221ENST00000526000 TNKS1BP1Q9C0C2 1729 aaKnown RBP9.56□□□□□ -0.88
CD44-221ENST00000526000 EIF3AQ14152 1382 aaKnown RBP9.55□□□□□ -0.88
CD44-221ENST00000526000 SOX12O15370 315 aa9.55□□□□□ -0.88
CD44-221ENST00000526000 TCP11L2Q8N4U5 519 aa9.55□□□□□ -0.88
CD44-221ENST00000526000 CABP1Q9NZU7 370 aa9.55□□□□□ -0.88
CD44-221ENST00000526000 DLC1Q96QB1 1528 aa9.55□□□□□ -0.88
CD44-221ENST00000526000 PLCH1Q4KWH8 1693 aa9.55□□□□□ -0.88
CD44-221ENST00000526000 ADGRB1O14514 1584 aa9.54□□□□□ -0.88
CD44-221ENST00000526000 PLEKHG3A1L390 1219 aa9.54□□□□□ -0.88
CD44-221ENST00000526000 GCP02774 474 aa9.54□□□□□ -0.88
CD44-221ENST00000526000 NLRP6P59044 892 aa9.54□□□□□ -0.88
CD44-221ENST00000526000 NBPF14Q5TI25 921 aa9.54□□□□□ -0.88
CD44-221ENST00000526000 NLRP13Q86W25 1043 aa9.54□□□□□ -0.88
CD44-221ENST00000526000 EP400Q96L91 3159 aa9.53□□□□□ -0.88
CD44-221ENST00000526000 TULP4Q9NRJ4 1543 aa9.53□□□□□ -0.88
CD44-221ENST00000526000 BARGINQ6ZT62 677 aa9.53□□□□□ -0.88
CD44-221ENST00000526000 PTF1AQ7RTS3 328 aa9.53□□□□□ -0.88
CD44-221ENST00000526000 STAC3Q96MF2 364 aa9.52□□□□□ -0.89
CD44-221ENST00000526000 PPP1R1BQ9UD71 204 aaPredicted RBP9.52□□□□□ -0.89
CD44-221ENST00000526000 NWD2Q9ULI1 1742 aa9.51□□□□□ -0.89
CD44-221ENST00000526000 NEUROD1Q13562 356 aa9.51□□□□□ -0.89
CD44-221ENST00000526000 TOM1L2Q6ZVM7 507 aa9.51□□□□□ -0.89
CD44-221ENST00000526000 TRPM3Q9HCF6 1732 aaPredicted RBP9.51□□□□□ -0.89
CD44-221ENST00000526000 COL14A1Q05707 1796 aaKnown RBP9.5□□□□□ -0.89
CD44-221ENST00000526000 SSH2Q76I76 1423 aa9.5□□□□□ -0.89
CD44-221ENST00000526000 YY1P25490 414 aa9.5□□□□□ -0.89
CD44-221ENST00000526000 SIN3AQ96ST3 1273 aa9.5□□□□□ -0.89
CD44-221ENST00000526000 ATP7BP35670 1465 aa9.5□□□□□ -0.89
CD44-221ENST00000526000 CENPJQ9HC77 1338 aaPredicted RBP9.5□□□□□ -0.89
CD44-221ENST00000526000 CAMTA1Q9Y6Y1 1673 aa9.49□□□□□ -0.89
CD44-221ENST00000526000 NRAPQ86VF7 1730 aa9.49□□□□□ -0.89
CD44-221ENST00000526000 ABCA3Q99758 1704 aa9.49□□□□□ -0.89
CD44-221ENST00000526000 KCNQ2O43526 872 aa9.49□□□□□ -0.89
CD44-221ENST00000526000 CSB-PGBD3P0DP91 1061 aa9.49□□□□□ -0.89
CD44-221ENST00000526000 DDB1Q16531 1140 aa9.49□□□□□ -0.89
CD44-221ENST00000526000 BCL11BQ9C0K0 894 aaPredicted RBP9.49□□□□□ -0.89
CD44-221ENST00000526000 PDGFDQ9GZP0 370 aaPredicted RBP9.49□□□□□ -0.89
CD44-221ENST00000526000 SPON1Q9HCB6 807 aa9.49□□□□□ -0.89
CD44-221ENST00000526000 ATF5Q9Y2D1 282 aaPredicted RBP9.49□□□□□ -0.89
CD44-221ENST00000526000 AXIN2Q9Y2T1 843 aa9.49□□□□□ -0.89
CD44-221ENST00000526000 POLR3AO14802 1390 aaPredicted RBP9.49□□□□□ -0.89
CD44-221ENST00000526000 ALS2Q96Q42 1657 aa9.48□□□□□ -0.89
CD44-221ENST00000526000 ZBTB7AO95365 584 aa9.48□□□□□ -0.89
CD44-221ENST00000526000 L3MBTL2Q969R5 705 aa9.48□□□□□ -0.89
CD44-221ENST00000526000 ADGRB2O60241 1585 aa9.48□□□□□ -0.89
CD44-221ENST00000526000 PPIP5K1Q6PFW1 1433 aa9.48□□□□□ -0.89
CD44-221ENST00000526000 MARCH10Q8NA82 808 aaPredicted RBP9.47□□□□□ -0.89
CD44-221ENST00000526000 ANO8Q9HCE9 1232 aaPredicted RBP9.47□□□□□ -0.89
CD44-221ENST00000526000 THRAP3Q9Y2W1 955 aaKnown RBP9.47□□□□□ -0.89
CD44-221ENST00000526000 USP19O94966 1318 aa9.47□□□□□ -0.89
CD44-221ENST00000526000 DCAF8L1A6NGE4 600 aa9.46□□□□□ -0.9
CD44-221ENST00000526000 PROM2Q8N271 834 aa9.46□□□□□ -0.9
CD44-221ENST00000526000 DISP2A7MBM2 1401 aa9.46□□□□□ -0.9
CD44-221ENST00000526000 SUGP2Q8IX01 1082 aaKnown RBP eCLIP9.45□□□□□ -0.9
CD44-221ENST00000526000 ACSBG1Q96GR2 724 aa9.45□□□□□ -0.9
CD44-221ENST00000526000 CPDO75976 1380 aa9.45□□□□□ -0.9
CD44-221ENST00000526000 THSD7AQ9UPZ6 1657 aa9.45□□□□□ -0.9
CD44-221ENST00000526000 EXOC5O00471 708 aa9.44□□□□□ -0.9
CD44-221ENST00000526000 ARHGEF25Q86VW2 580 aa9.44□□□□□ -0.9
CD44-221ENST00000526000 TTC21BQ7Z4L5 1316 aa9.44□□□□□ -0.9
CD44-221ENST00000526000 LRP5O75197 1615 aa9.44□□□□□ -0.9
CD44-221ENST00000526000 RGPD1P0DJD0 1748 aa9.43□□□□□ -0.9
CD44-221ENST00000526000 CRB1P82279 1406 aa9.43□□□□□ -0.9
CD44-221ENST00000526000 PARD3Q8TEW0 1356 aa9.43□□□□□ -0.9
CD44-221ENST00000526000 EVC2Q86UK5 1308 aa9.43□□□□□ -0.9
CD44-221ENST00000526000 PLSCR1O15162 318 aa9.43□□□□□ -0.9
CD44-221ENST00000526000 TMC1Q8TDI8 760 aa9.43□□□□□ -0.9
CD44-221ENST00000526000 COL5A2P05997 1499 aaPredicted RBP9.42□□□□□ -0.9
CD44-221ENST00000526000 AATKQ6ZMQ8 1374 aa9.42□□□□□ -0.9
CD44-221ENST00000526000 TXNRD1Q16881 649 aa9.42□□□□□ -0.9
CD44-221ENST00000526000 NLRP2Q9NX02 1062 aa9.42□□□□□ -0.9
CD44-221ENST00000526000 STK32BQ9NY57 414 aa9.42□□□□□ -0.9
CD44-221ENST00000526000 ARHGEF28Q8N1W1 1705 aaKnown RBP9.42□□□□□ -0.9
CD44-221ENST00000526000 USP6P35125 1406 aa9.41□□□□□ -0.9
CD44-221ENST00000526000 WDR17Q8IZU2 1322 aa9.41□□□□□ -0.9
CD44-221ENST00000526000 NME9Q86XW9 330 aa9.41□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms