RNA–Protein interactions for RNA: ENST00000525348.1

CD44-217, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 568 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-217ENST00000525348 NRG2O14511 850 aaPredicted RBP9.26□□□□□ -0.93
CD44-217ENST00000525348 SH3BP2P78314 561 aa9.26□□□□□ -0.93
CD44-217ENST00000525348 WNT7AO00755 349 aa9.25□□□□□ -0.93
CD44-217ENST00000525348 HMX1Q9NP08 348 aaPredicted RBP9.25□□□□□ -0.93
CD44-217ENST00000525348 LCE2BO14633 110 aa9.24□□□□□ -0.93
CD44-217ENST00000525348 USP17L8P0C7I0 530 aa9.24□□□□□ -0.93
CD44-217ENST00000525348 WNT7BP56706 349 aa9.24□□□□□ -0.93
CD44-217ENST00000525348 RC3H1Q5TC82 1133 aaKnown RBP9.24□□□□□ -0.93
CD44-217ENST00000525348 MRGPRX2Q96LB1 330 aa9.24□□□□□ -0.93
CD44-217ENST00000525348 ZNF511Q8NB15 262 aa9.23□□□□□ -0.93
CD44-217ENST00000525348 TOR4AQ9NXH8 423 aa9.23□□□□□ -0.93
CD44-217ENST00000525348 LAPTM4AQ15012 233 aa9.22□□□□□ -0.93
CD44-217ENST00000525348 EPS8L1Q8TE68 723 aa9.22□□□□□ -0.93
CD44-217ENST00000525348 NR6A1Q15406 480 aa9.21□□□□□ -0.94
CD44-217ENST00000525348 FOXJ1Q92949 421 aa9.2□□□□□ -0.94
CD44-217ENST00000525348 SIAH2O43255 324 aa9.19□□□□□ -0.94
CD44-217ENST00000525348 TMEM259Q4ZIN3 620 aa9.19□□□□□ -0.94
CD44-217ENST00000525348 C4orf48Q5BLP8 95 aa9.19□□□□□ -0.94
CD44-217ENST00000525348 Q6ZNB5 142 aa9.19□□□□□ -0.94
CD44-217ENST00000525348 TRIM34Q9BYJ4 488 aa9.18□□□□□ -0.94
CD44-217ENST00000525348 FAM187AA6NFU0 413 aa9.17□□□□□ -0.94
CD44-217ENST00000525348 CYP4X1Q8N118 509 aa9.17□□□□□ -0.94
CD44-217ENST00000525348 EHBP1Q8NDI1 1231 aa9.17□□□□□ -0.94
CD44-217ENST00000525348 J3QL48 77 aa9.16□□□□□ -0.94
CD44-217ENST00000525348 SMPD1P17405 629 aa9.16□□□□□ -0.94
CD44-217ENST00000525348 SNIP1Q8TAD8 396 aaKnown RBP9.16□□□□□ -0.94
CD44-217ENST00000525348 GJD4Q96KN9 370 aaPredicted RBP9.16□□□□□ -0.94
CD44-217ENST00000525348 SH3BP5LQ7L8J4 393 aa9.15□□□□□ -0.94
CD44-217ENST00000525348 SNRKQ9NRH2 765 aa9.15□□□□□ -0.94
CD44-217ENST00000525348 FKBPLQ9UIM3 349 aa9.15□□□□□ -0.94
CD44-217ENST00000525348 TLL2Q9Y6L7 1015 aa9.15□□□□□ -0.94
CD44-217ENST00000525348 TTC24A2A3L6 582 aaPredicted RBP9.14□□□□□ -0.95
CD44-217ENST00000525348 SH3RF1Q7Z6J0 888 aa9.14□□□□□ -0.95
CD44-217ENST00000525348 MTMR14Q8NCE2 650 aa9.14□□□□□ -0.95
CD44-217ENST00000525348 ARMC2Q8NEN0 867 aa9.14□□□□□ -0.95
CD44-217ENST00000525348 DGAT1O75907 488 aa9.13□□□□□ -0.95
CD44-217ENST00000525348 BANK1Q8NDB2 785 aa9.13□□□□□ -0.95
CD44-217ENST00000525348 OCSTAMPQ9BR26 566 aa9.13□□□□□ -0.95
CD44-217ENST00000525348 VARSP26640 1264 aaKnown RBP9.12□□□□□ -0.95
CD44-217ENST00000525348 MYT1Q01538 1121 aa9.12□□□□□ -0.95
CD44-217ENST00000525348 PKDCCQ504Y2 493 aa9.12□□□□□ -0.95
CD44-217ENST00000525348 NBPF14Q5TI25 921 aa9.12□□□□□ -0.95
CD44-217ENST00000525348 GPR37L1O60883 481 aa9.11□□□□□ -0.95
CD44-217ENST00000525348 ALDH1A1P00352 501 aa9.11□□□□□ -0.95
CD44-217ENST00000525348 TRAF7Q6Q0C0 670 aa9.11□□□□□ -0.95
CD44-217ENST00000525348 BPHLQ86WA6 291 aaPredicted RBP9.11□□□□□ -0.95
CD44-217ENST00000525348 C1QTNF2Q9BXJ5 285 aa9.11□□□□□ -0.95
CD44-217ENST00000525348 AGERQ15109 404 aa9.1□□□□□ -0.95
CD44-217ENST00000525348 GPKOWQ92917 476 aaPredicted RBP eCLIP9.1□□□□□ -0.95
CD44-217ENST00000525348 AVPP01185 164 aa9.09□□□□□ -0.95
CD44-217ENST00000525348 PDXDC2PQ6P474 469 aa9.09□□□□□ -0.95
CD44-217ENST00000525348 HPS1Q92902 700 aa9.09□□□□□ -0.95
CD44-217ENST00000525348 CARD14Q9BXL6 1004 aa9.09□□□□□ -0.95
CD44-217ENST00000525348 ZC3H4Q9UPT8 1303 aaKnown RBP9.08□□□□□ -0.96
CD44-217ENST00000525348 MAGEB6P1A0A0J9YX57 407 aa9.08□□□□□ -0.96
CD44-217ENST00000525348 ST8SIA5O15466 376 aa9.08□□□□□ -0.96
CD44-217ENST00000525348 FAM174AQ8TBP5 190 aa9.08□□□□□ -0.96
CD44-217ENST00000525348 TMEM132AQ24JP5 1023 aa9.07□□□□□ -0.96
CD44-217ENST00000525348 ERFEQ4G0M1 354 aa9.07□□□□□ -0.96
CD44-217ENST00000525348 MPNDQ8N594 471 aa9.07□□□□□ -0.96
CD44-217ENST00000525348 SOCS7O14512 581 aa9.06□□□□□ -0.96
CD44-217ENST00000525348 CDK15Q96Q40 435 aa9.06□□□□□ -0.96
CD44-217ENST00000525348 ARHGAP9Q9BRR9 750 aa9.06□□□□□ -0.96
CD44-217ENST00000525348 AAASQ9NRG9 546 aa9.06□□□□□ -0.96
CD44-217ENST00000525348 TRMT44Q8IYL2 757 aaKnown RBP9.05□□□□□ -0.96
CD44-217ENST00000525348 DACH1Q9UI36 760 aa9.05□□□□□ -0.96
CD44-217ENST00000525348 GRM5P41594 1212 aa9.04□□□□□ -0.96
CD44-217ENST00000525348 ARID5BQ14865 1188 aa9.04□□□□□ -0.96
CD44-217ENST00000525348 CRIPAKQ8N1N5 446 aa9.04□□□□□ -0.96
CD44-217ENST00000525348 ADH1CP00326 375 aa9.03□□□□□ -0.96
CD44-217ENST00000525348 NR3C2P08235 984 aa9.03□□□□□ -0.96
CD44-217ENST00000525348 PTK2Q05397 1052 aa9.03□□□□□ -0.96
CD44-217ENST00000525348 MCM6Q14566 821 aa9.03□□□□□ -0.96
CD44-217ENST00000525348 ADAM32Q8TC27 787 aa9.03□□□□□ -0.96
CD44-217ENST00000525348 GPSM3Q9Y4H4 160 aa9.03□□□□□ -0.96
CD44-217ENST00000525348 WASF2Q9Y6W5 498 aa9.03□□□□□ -0.96
CD44-217ENST00000525348 SMCPP49901 116 aaPredicted RBP9.02□□□□□ -0.97
CD44-217ENST00000525348 NNTQ13423 1086 aa9.02□□□□□ -0.97
CD44-217ENST00000525348 TBC1D2BQ9UPU7 963 aa9.02□□□□□ -0.97
CD44-217ENST00000525348 FBXO45P0C2W1 286 aa9.01□□□□□ -0.97
CD44-217ENST00000525348 PNMA1Q8ND90 353 aa9.01□□□□□ -0.97
CD44-217ENST00000525348 MAP4K5Q9Y4K4 846 aa9.01□□□□□ -0.97
CD44-217ENST00000525348 NDUFB9Q9Y6M9 179 aa9.01□□□□□ -0.97
CD44-217ENST00000525348 AXIN1O15169 862 aa9□□□□□ -0.97
CD44-217ENST00000525348 CTC1Q2NKJ3 1217 aa9□□□□□ -0.97
CD44-217ENST00000525348 ZBTB33Q86T24 672 aa9□□□□□ -0.97
CD44-217ENST00000525348 KLF16Q9BXK1 252 aaPredicted RBP9□□□□□ -0.97
CD44-217ENST00000525348 FSHRP23945 695 aa8.99□□□□□ -0.97
CD44-217ENST00000525348 VASH1Q7L8A9 365 aaPredicted RBP8.99□□□□□ -0.97
CD44-217ENST00000525348 ZBBXA8MT70 800 aa8.98□□□□□ -0.97
CD44-217ENST00000525348 POTECB2RU33 542 aa8.98□□□□□ -0.97
CD44-217ENST00000525348 SLC10A4Q96EP9 437 aa8.98□□□□□ -0.97
CD44-217ENST00000525348 TIMP2P16035 220 aa8.97□□□□□ -0.97
CD44-217ENST00000525348 NR5A1Q13285 461 aa8.97□□□□□ -0.97
CD44-217ENST00000525348 IRF5Q13568 498 aa8.97□□□□□ -0.97
CD44-217ENST00000525348 GDPD2Q9HCC8 539 aa8.97□□□□□ -0.97
CD44-217ENST00000525348 KCTD15Q96SI1 283 aaPredicted RBP8.96□□□□□ -0.98
CD44-217ENST00000525348 APBB1O00213 710 aa8.95□□□□□ -0.98
CD44-217ENST00000525348 WDR4P57081 412 aaKnown RBP8.95□□□□□ -0.98
CD44-217ENST00000525348 NR1H3Q13133 447 aa8.95□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 77.8 ms