RNA–Protein interactions for RNA: ENST00000524288.1

SKP1-213, Transcript of S-phase kinase associated protein 1, humanhuman

TSL 1 (best)

Gene SKP1, Length 732 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKP1-213ENST00000524288 NUTM2DQ5VT03 806 aaPredicted RBP11.69□□□□□ -0.54
SKP1-213ENST00000524288 ERICH6Q7L0X2 663 aa11.69□□□□□ -0.54
SKP1-213ENST00000524288 NUTM2AQ8IVF1 878 aaPredicted RBP11.69□□□□□ -0.54
SKP1-213ENST00000524288 EHBP1Q8NDI1 1231 aa11.69□□□□□ -0.54
SKP1-213ENST00000524288 AXIN1O15169 862 aa11.68□□□□□ -0.54
SKP1-213ENST00000524288 SH3BP2P78314 561 aa11.68□□□□□ -0.54
SKP1-213ENST00000524288 ST8SIA5O15466 376 aa11.67□□□□□ -0.54
SKP1-213ENST00000524288 QPCTQ16769 361 aa11.67□□□□□ -0.54
SKP1-213ENST00000524288 FAM117AQ9C073 453 aa11.67□□□□□ -0.54
SKP1-213ENST00000524288 F12P00748 615 aaPredicted RBP11.66□□□□□ -0.54
SKP1-213ENST00000524288 CTHP32929 405 aa11.66□□□□□ -0.54
SKP1-213ENST00000524288 HELBQ8NG08 1087 aaPredicted RBP11.66□□□□□ -0.54
SKP1-213ENST00000524288 J3QL48 77 aa11.65□□□□□ -0.54
SKP1-213ENST00000524288 ZNF511Q8NB15 262 aa11.65□□□□□ -0.54
SKP1-213ENST00000524288 SIAH2O43255 324 aa11.64□□□□□ -0.55
SKP1-213ENST00000524288 SH3D19Q5HYK7 790 aa11.64□□□□□ -0.55
SKP1-213ENST00000524288 BAP1Q92560 729 aa11.64□□□□□ -0.55
SKP1-213ENST00000524288 SKIV2LQ15477 1246 aaKnown RBP11.63□□□□□ -0.55
SKP1-213ENST00000524288 ALDH1A1P00352 501 aa11.62□□□□□ -0.55
SKP1-213ENST00000524288 VARSP26640 1264 aaKnown RBP11.62□□□□□ -0.55
SKP1-213ENST00000524288 LINC01559Q495D7 138 aa11.62□□□□□ -0.55
SKP1-213ENST00000524288 MPNDQ8N594 471 aa11.62□□□□□ -0.55
SKP1-213ENST00000524288 TSC1Q92574 1164 aa11.62□□□□□ -0.55
SKP1-213ENST00000524288 POLR3EQ9NVU0 708 aa11.62□□□□□ -0.55
SKP1-213ENST00000524288 MAP10Q9P2G4 905 aa11.61□□□□□ -0.55
SKP1-213ENST00000524288 PER1O15534 1290 aaPredicted RBP11.6□□□□□ -0.55
SKP1-213ENST00000524288 RTL5Q5HYW3 569 aaPredicted RBP11.6□□□□□ -0.55
SKP1-213ENST00000524288 ARMC2Q8NEN0 867 aa11.6□□□□□ -0.55
SKP1-213ENST00000524288 HPS1Q92902 700 aa11.59□□□□□ -0.55
SKP1-213ENST00000524288 PLEKHG3A1L390 1219 aa11.58□□□□□ -0.56
SKP1-213ENST00000524288 WASF2Q9Y6W5 498 aa11.58□□□□□ -0.56
SKP1-213ENST00000524288 POTECB2RU33 542 aa11.56□□□□□ -0.56
SKP1-213ENST00000524288 FAM174AQ8TBP5 190 aa11.56□□□□□ -0.56
SKP1-213ENST00000524288 GNL3Q9BVP2 549 aaKnown RBP eCLIP11.56□□□□□ -0.56
SKP1-213ENST00000524288 PPP2R2DQ66LE6 453 aa11.55□□□□□ -0.56
SKP1-213ENST00000524288 DACH1Q9UI36 760 aa11.55□□□□□ -0.56
SKP1-213ENST00000524288 SUPT5HO00267 1087 aaKnown RBP11.54□□□□□ -0.56
SKP1-213ENST00000524288 NBPF14Q5TI25 921 aa11.54□□□□□ -0.56
SKP1-213ENST00000524288 BPHLQ86WA6 291 aaPredicted RBP11.54□□□□□ -0.56
SKP1-213ENST00000524288 GPKOWQ92917 476 aaPredicted RBP eCLIP11.53□□□□□ -0.56
SKP1-213ENST00000524288 ATP13A2Q9NQ11 1180 aa11.53□□□□□ -0.56
SKP1-213ENST00000524288 SENP2Q9HC62 589 aa11.52□□□□□ -0.57
SKP1-213ENST00000524288 GOPCQ9HD26 462 aa11.52□□□□□ -0.57
SKP1-213ENST00000524288 TLL2Q9Y6L7 1015 aa11.52□□□□□ -0.57
SKP1-213ENST00000524288 FOXJ1Q92949 421 aa11.51□□□□□ -0.57
SKP1-213ENST00000524288 ZNF775Q96BV0 537 aaPredicted RBP11.51□□□□□ -0.57
SKP1-213ENST00000524288 CDK15Q96Q40 435 aa11.51□□□□□ -0.57
SKP1-213ENST00000524288 GMPR2Q9P2T1 348 aaKnown RBP11.51□□□□□ -0.57
SKP1-213ENST00000524288 C11orf95C9JLR9 678 aaPredicted RBP11.5□□□□□ -0.57
SKP1-213ENST00000524288 PROCA1Q8NCQ7 364 aaPredicted RBP11.5□□□□□ -0.57
SKP1-213ENST00000524288 CTDSPL2Q05D32 466 aa11.49□□□□□ -0.57
SKP1-213ENST00000524288 AGERQ15109 404 aa11.49□□□□□ -0.57
SKP1-213ENST00000524288 ATP1B4Q9UN42 357 aaPredicted RBP11.49□□□□□ -0.57
SKP1-213ENST00000524288 ADH1CP00326 375 aa11.48□□□□□ -0.57
SKP1-213ENST00000524288 SH3RF1Q7Z6J0 888 aa11.48□□□□□ -0.57
SKP1-213ENST00000524288 KIFC2Q96AC6 838 aa11.48□□□□□ -0.57
SKP1-213ENST00000524288 CAPN5O15484 640 aaPredicted RBP11.47□□□□□ -0.57
SKP1-213ENST00000524288 TRIM47Q96LD4 638 aa11.47□□□□□ -0.57
SKP1-213ENST00000524288 NNTQ13423 1086 aa11.46□□□□□ -0.57
SKP1-213ENST00000524288 SH3BP5LQ7L8J4 393 aa11.46□□□□□ -0.57
SKP1-213ENST00000524288 C1QTNF2Q9BXJ5 285 aa11.46□□□□□ -0.57
SKP1-213ENST00000524288 ZC3H4Q9UPT8 1303 aaKnown RBP11.45□□□□□ -0.58
SKP1-213ENST00000524288 C4orf48Q5BLP8 95 aa11.45□□□□□ -0.58
SKP1-213ENST00000524288 NR5A1Q13285 461 aa11.44□□□□□ -0.58
SKP1-213ENST00000524288 TRMT44Q8IYL2 757 aaKnown RBP11.44□□□□□ -0.58
SKP1-213ENST00000524288 MAP4K5Q9Y4K4 846 aa11.44□□□□□ -0.58
SKP1-213ENST00000524288 FBXO31Q5XUX0 539 aaPredicted RBP11.43□□□□□ -0.58
SKP1-213ENST00000524288 PDXDC2PQ6P474 469 aa11.42□□□□□ -0.58
SKP1-213ENST00000524288 LRRN4Q8WUT4 740 aa11.42□□□□□ -0.58
SKP1-213ENST00000524288 PCMTD1Q96MG8 357 aaPredicted RBP11.42□□□□□ -0.58
SKP1-213ENST00000524288 FKBPLQ9UIM3 349 aa11.42□□□□□ -0.58
SKP1-213ENST00000524288 AP1G2O75843 785 aa11.41□□□□□ -0.58
SKP1-213ENST00000524288 ARID5BQ14865 1188 aa11.41□□□□□ -0.58
SKP1-213ENST00000524288 PNMA1Q8ND90 353 aa11.41□□□□□ -0.58
SKP1-213ENST00000524288 TIMP2P16035 220 aa11.39□□□□□ -0.59
SKP1-213ENST00000524288 RFC5P40937 340 aa11.39□□□□□ -0.59
SKP1-213ENST00000524288 KLF16Q9BXK1 252 aaPredicted RBP11.39□□□□□ -0.59
SKP1-213ENST00000524288 MAGEB6P1A0A0J9YX57 407 aa11.38□□□□□ -0.59
SKP1-213ENST00000524288 USP17L8P0C7I0 530 aa11.38□□□□□ -0.59
SKP1-213ENST00000524288 SNRPBP14678 240 aaKnown RBP11.38□□□□□ -0.59
SKP1-213ENST00000524288 GRM5P41594 1212 aa11.38□□□□□ -0.59
SKP1-213ENST00000524288 WDR4P57081 412 aaKnown RBP11.38□□□□□ -0.59
SKP1-213ENST00000524288 NR6A1Q15406 480 aa11.38□□□□□ -0.59
SKP1-213ENST00000524288 TRIM46Q7Z4K8 759 aa11.38□□□□□ -0.59
SKP1-213ENST00000524288 GPSM3Q9Y4H4 160 aa11.38□□□□□ -0.59
SKP1-213ENST00000524288 BMP1P13497 986 aa11.37□□□□□ -0.59
SKP1-213ENST00000524288 TMEM259Q4ZIN3 620 aa11.37□□□□□ -0.59
SKP1-213ENST00000524288 ARHGAP9Q9BRR9 750 aa11.37□□□□□ -0.59
SKP1-213ENST00000524288 CDV3Q9UKY7 258 aaKnown RBP11.37□□□□□ -0.59
SKP1-213ENST00000524288 ERFEQ4G0M1 354 aa11.36□□□□□ -0.59
SKP1-213ENST00000524288 TREML4Q6UXN2 200 aa11.36□□□□□ -0.59
SKP1-213ENST00000524288 ZMYND15Q9H091 742 aa11.36□□□□□ -0.59
SKP1-213ENST00000524288 VASH1Q7L8A9 365 aaPredicted RBP11.35□□□□□ -0.59
SKP1-213ENST00000524288 CARD14Q9BXL6 1004 aa11.35□□□□□ -0.59
SKP1-213ENST00000524288 ZIC2O95409 532 aaPredicted RBP11.34□□□□□ -0.59
SKP1-213ENST00000524288 NR3C2P08235 984 aa11.34□□□□□ -0.59
SKP1-213ENST00000524288 FSHRP23945 695 aa11.34□□□□□ -0.59
SKP1-213ENST00000524288 PTK2Q05397 1052 aa11.34□□□□□ -0.59
SKP1-213ENST00000524288 MRPL14Q6P1L8 145 aaKnown RBP11.34□□□□□ -0.59
SKP1-213ENST00000524288 SCARF1Q14162 830 aa11.33□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms