RNA–Protein interactions for RNA: ENST00000523655.1

SREK1-213, Transcript of splicing regulatory glutamic acid and lysine rich protein 1, human

TSL 5

Gene SREK1, Length 606 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SREK1-213	ENST00000523655	AAAS	Q9NRG9	546 aa		10.23	□□□□□ -0.77
SREK1-213	ENST00000523655	SNIP1	Q8TAD8	396 aa	Known RBP	10.22	□□□□□ -0.77
SREK1-213	ENST00000523655	WNT7B	P56706	349 aa		10.21	□□□□□ -0.77
SREK1-213	ENST00000523655	ZNF787	Q6DD87	383 aa		10.21	□□□□□ -0.77
SREK1-213	ENST00000523655	HPS1	Q92902	700 aa		10.2	□□□□□ -0.78
SREK1-213	ENST00000523655	F12	P00748	615 aa	Predicted RBP	10.19	□□□□□ -0.78
SREK1-213	ENST00000523655	TPRN	Q4KMQ1	711 aa		10.19	□□□□□ -0.78
SREK1-213	ENST00000523655	EHBP1	Q8NDI1	1231 aa		10.19	□□□□□ -0.78
SREK1-213	ENST00000523655	RSPH6A	Q9H0K4	717 aa		10.19	□□□□□ -0.78
SREK1-213	ENST00000523655	ATP1B4	Q9UN42	357 aa	Predicted RBP	10.19	□□□□□ -0.78
SREK1-213	ENST00000523655	SIAH2	O43255	324 aa		10.18	□□□□□ -0.78
SREK1-213	ENST00000523655	ALDH1A1	P00352	501 aa		10.18	□□□□□ -0.78
SREK1-213	ENST00000523655	TUSC1	Q2TAM9	212 aa		10.18	□□□□□ -0.78
SREK1-213	ENST00000523655	AVP	P01185	164 aa		10.17	□□□□□ -0.78
SREK1-213	ENST00000523655	CTDSPL2	Q05D32	466 aa		10.17	□□□□□ -0.78
SREK1-213	ENST00000523655	ZNF511	Q8NB15	262 aa		10.17	□□□□□ -0.78
SREK1-213	ENST00000523655	FOXJ1	Q92949	421 aa		10.17	□□□□□ -0.78
SREK1-213	ENST00000523655	SKIV2L	Q15477	1246 aa	Known RBP	10.16	□□□□□ -0.78
SREK1-213	ENST00000523655	NEUROD2	Q15784	382 aa		10.16	□□□□□ -0.78
SREK1-213	ENST00000523655	TLL2	Q9Y6L7	1015 aa		10.16	□□□□□ -0.78
SREK1-213	ENST00000523655	SH3D19	Q5HYK7	790 aa		10.15	□□□□□ -0.78
SREK1-213	ENST00000523655	IL27	Q8NEV9	243 aa		10.15	□□□□□ -0.78
SREK1-213	ENST00000523655	DDRGK1	Q96HY6	314 aa		10.15	□□□□□ -0.78
SREK1-213	ENST00000523655	AXIN1	O15169	862 aa		10.14	□□□□□ -0.79
SREK1-213	ENST00000523655	LRRN4	Q8WUT4	740 aa		10.14	□□□□□ -0.79
SREK1-213	ENST00000523655	GNL3	Q9BVP2	549 aa	Known RBP eCLIP	10.13	□□□□□ -0.79
SREK1-213	ENST00000523655	BRPF1	P55201	1214 aa	Predicted RBP	10.12	□□□□□ -0.79
SREK1-213	ENST00000523655	C4orf48	Q5BLP8	95 aa		10.12	□□□□□ -0.79
SREK1-213	ENST00000523655	HELB	Q8NG08	1087 aa	Predicted RBP	10.11	□□□□□ -0.79
SREK1-213	ENST00000523655	GMPR2	Q9P2T1	348 aa	Known RBP	10.11	□□□□□ -0.79
SREK1-213	ENST00000523655	CRIPAK	Q8N1N5	446 aa		10.1	□□□□□ -0.79
SREK1-213	ENST00000523655	AP1G2	O75843	785 aa		10.08	□□□□□ -0.8
SREK1-213	ENST00000523655	ZNF775	Q96BV0	537 aa	Predicted RBP	10.08	□□□□□ -0.8
SREK1-213	ENST00000523655	WASF2	Q9Y6W5	498 aa		10.08	□□□□□ -0.8
SREK1-213	ENST00000523655	PRKCSH	P14314	528 aa	Predicted RBP	10.07	□□□□□ -0.8
SREK1-213	ENST00000523655	VARS	P26640	1264 aa	Known RBP	10.07	□□□□□ -0.8
SREK1-213	ENST00000523655	SMCP	P49901	116 aa	Predicted RBP	10.07	□□□□□ -0.8
SREK1-213	ENST00000523655	ARID5B	Q14865	1188 aa		10.07	□□□□□ -0.8
SREK1-213	ENST00000523655	AGER	Q15109	404 aa		10.07	□□□□□ -0.8
SREK1-213	ENST00000523655	CTC1	Q2NKJ3	1217 aa		10.07	□□□□□ -0.8
SREK1-213	ENST00000523655	EPS8L1	Q8TE68	723 aa		10.06	□□□□□ -0.8
SREK1-213	ENST00000523655	NR6A1	Q15406	480 aa		10.05	□□□□□ -0.8
SREK1-213	ENST00000523655	PPP2R2D	Q66LE6	453 aa		10.05	□□□□□ -0.8
SREK1-213	ENST00000523655	ATP13A2	Q9NQ11	1180 aa		10.05	□□□□□ -0.8
SREK1-213	ENST00000523655	HMX1	Q9NP08	348 aa	Predicted RBP	10.04	□□□□□ -0.8
SREK1-213	ENST00000523655	BMP1	P13497	986 aa		10.03	□□□□□ -0.8
SREK1-213	ENST00000523655	MAGEB6P1	A0A0J9YX57	407 aa		10.02	□□□□□ -0.81
SREK1-213	ENST00000523655	C11orf95	C9JLR9	678 aa	Predicted RBP	10.02	□□□□□ -0.81
SREK1-213	ENST00000523655	SNRPB	P14678	240 aa	Known RBP	10.02	□□□□□ -0.81
SREK1-213	ENST00000523655	RFC5	P40937	340 aa		10.02	□□□□□ -0.81
SREK1-213	ENST00000523655	NNT	Q13423	1086 aa		10.02	□□□□□ -0.81
SREK1-213	ENST00000523655	FAM174A	Q8TBP5	190 aa		10.02	□□□□□ -0.81
SREK1-213	ENST00000523655	CARD14	Q9BXL6	1004 aa		10.02	□□□□□ -0.81
SREK1-213	ENST00000523655	CAPN5	O15484	640 aa	Predicted RBP	10	□□□□□ -0.81
SREK1-213	ENST00000523655	USP17L8	P0C7I0	530 aa		10	□□□□□ -0.81
SREK1-213	ENST00000523655	SH3BP5L	Q7L8J4	393 aa		10	□□□□□ -0.81
SREK1-213	ENST00000523655	SH3RF1	Q7Z6J0	888 aa		10	□□□□□ -0.81
SREK1-213	ENST00000523655	BPHL	Q86WA6	291 aa	Predicted RBP	10	□□□□□ -0.81
SREK1-213	ENST00000523655	PCMTD1	Q96MG8	357 aa	Predicted RBP	10	□□□□□ -0.81
SREK1-213	ENST00000523655	NR3C2	P08235	984 aa		9.99	□□□□□ -0.81
SREK1-213	ENST00000523655	TRIM46	Q7Z4K8	759 aa		9.99	□□□□□ -0.81
SREK1-213	ENST00000523655	GRM5	P41594	1212 aa		9.98	□□□□□ -0.81
SREK1-213	ENST00000523655	ARMC2	Q8NEN0	867 aa		9.98	□□□□□ -0.81
SREK1-213	ENST00000523655	CDK15	Q96Q40	435 aa		9.98	□□□□□ -0.81
SREK1-213	ENST00000523655	ADH1C	P00326	375 aa		9.97	□□□□□ -0.81
SREK1-213	ENST00000523655	WDR4	P57081	412 aa	Known RBP	9.97	□□□□□ -0.81
SREK1-213	ENST00000523655	NBPF14	Q5TI25	921 aa		9.97	□□□□□ -0.81
SREK1-213	ENST00000523655	OCSTAMP	Q9BR26	566 aa		9.97	□□□□□ -0.81
SREK1-213	ENST00000523655	C1QTNF2	Q9BXJ5	285 aa		9.97	□□□□□ -0.81
SREK1-213	ENST00000523655	TIMP2	P16035	220 aa		9.96	□□□□□ -0.82
SREK1-213	ENST00000523655	MPND	Q8N594	471 aa		9.96	□□□□□ -0.82
SREK1-213	ENST00000523655	KLF16	Q9BXK1	252 aa	Predicted RBP	9.96	□□□□□ -0.82
SREK1-213	ENST00000523655	ZFAND3	Q9H8U3	227 aa		9.96	□□□□□ -0.82
SREK1-213	ENST00000523655	FKBPL	Q9UIM3	349 aa		9.96	□□□□□ -0.82
SREK1-213	ENST00000523655	ERFE	Q4G0M1	354 aa		9.95	□□□□□ -0.82
SREK1-213	ENST00000523655	ITPKC	Q96DU7	683 aa		9.94	□□□□□ -0.82
SREK1-213	ENST00000523655	GOPC	Q9HD26	462 aa		9.94	□□□□□ -0.82
SREK1-213	ENST00000523655	FSHR	P23945	695 aa		9.93	□□□□□ -0.82
SREK1-213	ENST00000523655	VASH1	Q7L8A9	365 aa	Predicted RBP	9.93	□□□□□ -0.82
SREK1-213	ENST00000523655	TRIM47	Q96LD4	638 aa		9.93	□□□□□ -0.82
SREK1-213	ENST00000523655	ARHGAP9	Q9BRR9	750 aa		9.93	□□□□□ -0.82
SREK1-213	ENST00000523655	TRIM34	Q9BYJ4	488 aa		9.93	□□□□□ -0.82
SREK1-213	ENST00000523655	ZIC2	O95409	532 aa	Predicted RBP	9.92	□□□□□ -0.82
SREK1-213	ENST00000523655	PDXDC2P	Q6P474	469 aa		9.92	□□□□□ -0.82
SREK1-213	ENST00000523655	ZFP42	Q96MM3	310 aa		9.91	□□□□□ -0.82
SREK1-213	ENST00000523655	SOBP	A7XYQ1	873 aa		9.89	□□□□□ -0.83
SREK1-213	ENST00000523655	NR5A1	Q13285	461 aa		9.89	□□□□□ -0.83
SREK1-213	ENST00000523655	TRMT44	Q8IYL2	757 aa	Known RBP	9.89	□□□□□ -0.83
SREK1-213	ENST00000523655	GPKOW	Q92917	476 aa	Predicted RBP eCLIP	9.89	□□□□□ -0.83	4e-6	■□□□□ 8.7
SREK1-213	ENST00000523655	PURB	Q96QR8	312 aa	Known RBP	9.89	□□□□□ -0.83
SREK1-213	ENST00000523655	ZBTB33	Q86T24	672 aa		9.88	□□□□□ -0.83
SREK1-213	ENST00000523655	ADAM32	Q8TC27	787 aa		9.88	□□□□□ -0.83
SREK1-213	ENST00000523655	GJD4	Q96KN9	370 aa	Predicted RBP	9.88	□□□□□ -0.83
SREK1-213	ENST00000523655	SENP2	Q9HC62	589 aa		9.88	□□□□□ -0.83
SREK1-213	ENST00000523655	TMEM259	Q4ZIN3	620 aa		9.87	□□□□□ -0.83
SREK1-213	ENST00000523655	C6orf118	Q5T5N4	469 aa		9.87	□□□□□ -0.83
SREK1-213	ENST00000523655	MRPL14	Q6P1L8	145 aa	Known RBP	9.87	□□□□□ -0.83
SREK1-213	ENST00000523655	LCE2C	Q5TA81	110 aa		9.86	□□□□□ -0.83
SREK1-213	ENST00000523655	MAP4K5	Q9Y4K4	846 aa		9.86	□□□□□ -0.83
SREK1-213	ENST00000523655	RAB15	P59190	212 aa		9.85	□□□□□ -0.83

Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms