RNA–Protein interactions for RNA: ENST00000520561.1

CSMD1-208, Transcript of CUB and Sushi multiple domains 1, human

TSL 4

Gene CSMD1, Length 527 nt, Biotype processed transcript, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CSMD1-208	ENST00000520561	TTC21B	Q7Z4L5	1316 aa		12.14	□□□□□ -0.47
CSMD1-208	ENST00000520561	SSH2	Q76I76	1423 aa		12.14	□□□□□ -0.47
CSMD1-208	ENST00000520561	CCER2	I3L3R5	266 aa		12.14	□□□□□ -0.47
CSMD1-208	ENST00000520561	MORC1	Q86VD1	984 aa		12.14	□□□□□ -0.47
CSMD1-208	ENST00000520561	PSME1	Q06323	249 aa		12.13	□□□□□ -0.47
CSMD1-208	ENST00000520561	PIK3C2A	O00443	1686 aa		12.13	□□□□□ -0.47
CSMD1-208	ENST00000520561	NPHP3	Q7Z494	1330 aa		12.12	□□□□□ -0.47
CSMD1-208	ENST00000520561	FYB1	O15117	783 aa		12.12	□□□□□ -0.47
CSMD1-208	ENST00000520561	NME9	Q86XW9	330 aa		12.12	□□□□□ -0.47
CSMD1-208	ENST00000520561	GGNBP2	Q9H3C7	697 aa		12.12	□□□□□ -0.47
CSMD1-208	ENST00000520561	SLAIN2	Q9P270	581 aa		12.12	□□□□□ -0.47
CSMD1-208	ENST00000520561	USP54	Q70EL1	1684 aa		12.12	□□□□□ -0.47
CSMD1-208	ENST00000520561	OVOS2	A0A0J9YW53	1432 aa		12.11	□□□□□ -0.47
CSMD1-208	ENST00000520561	OVOS2	Q6IE36	1432 aa		12.11	□□□□□ -0.47
CSMD1-208	ENST00000520561	TRPM3	Q9HCF6	1732 aa	Predicted RBP	12.11	□□□□□ -0.47
CSMD1-208	ENST00000520561	FOXO3	O43524	673 aa		12.11	□□□□□ -0.47
CSMD1-208	ENST00000520561	PAK3	O75914	559 aa	Predicted RBP	12.11	□□□□□ -0.47
CSMD1-208	ENST00000520561	BRINP3	Q76B58	766 aa		12.11	□□□□□ -0.47
CSMD1-208	ENST00000520561	NLRP13	Q86W25	1043 aa		12.11	□□□□□ -0.47
CSMD1-208	ENST00000520561	COG3	Q96JB2	828 aa		12.11	□□□□□ -0.47
CSMD1-208	ENST00000520561	NHSL1	Q5SYE7	1610 aa		12.1	□□□□□ -0.47
CSMD1-208	ENST00000520561	ROBO1	Q9Y6N7	1651 aa		12.1	□□□□□ -0.47
CSMD1-208	ENST00000520561	PXDN	Q92626	1479 aa		12.09	□□□□□ -0.47
CSMD1-208	ENST00000520561	SBNO1	A3KN83	1393 aa		12.09	□□□□□ -0.47
CSMD1-208	ENST00000520561	PPP2R1A	P30153	589 aa		12.09	□□□□□ -0.47
CSMD1-208	ENST00000520561	KRT28	Q7Z3Y7	464 aa		12.09	□□□□□ -0.47
CSMD1-208	ENST00000520561	MRS2	Q9HD23	443 aa		12.09	□□□□□ -0.47
CSMD1-208	ENST00000520561	SCAF1	Q9H7N4	1312 aa	Known RBP	12.09	□□□□□ -0.47
CSMD1-208	ENST00000520561	USP31	Q70CQ4	1352 aa		12.08	□□□□□ -0.48
CSMD1-208	ENST00000520561	ALS2	Q96Q42	1657 aa		12.08	□□□□□ -0.48
CSMD1-208	ENST00000520561	TOM1	O60784	492 aa		12.08	□□□□□ -0.48
CSMD1-208	ENST00000520561	TNNT2	P45379	298 aa	Predicted RBP	12.08	□□□□□ -0.48
CSMD1-208	ENST00000520561	XPC	Q01831	940 aa	Predicted RBP	12.08	□□□□□ -0.48
CSMD1-208	ENST00000520561	TNS3	Q68CZ2	1445 aa		12.08	□□□□□ -0.48
CSMD1-208	ENST00000520561	ABTB2	Q8N961	1025 aa		12.07	□□□□□ -0.48
CSMD1-208	ENST00000520561	AHDC1	Q5TGY3	1603 aa	Predicted RBP	12.07	□□□□□ -0.48
CSMD1-208	ENST00000520561	NLRP6	P59044	892 aa		12.06	□□□□□ -0.48
CSMD1-208	ENST00000520561	ZRANB1	Q9UGI0	708 aa		12.06	□□□□□ -0.48
CSMD1-208	ENST00000520561	MARF1	Q9Y4F3	1742 aa	Known RBP	12.06	□□□□□ -0.48
CSMD1-208	ENST00000520561	ARHGEF10	O15013	1369 aa		12.05	□□□□□ -0.48
CSMD1-208	ENST00000520561	AATK	Q6ZMQ8	1374 aa		12.05	□□□□□ -0.48
CSMD1-208	ENST00000520561	LMOD2	Q6P5Q4	547 aa		12.05	□□□□□ -0.48
CSMD1-208	ENST00000520561	CERK	Q8TCT0	537 aa		12.05	□□□□□ -0.48
CSMD1-208	ENST00000520561	DDX17	Q92841	729 aa	Known RBP	12.05	□□□□□ -0.48
CSMD1-208	ENST00000520561	CFAP53	Q96M91	514 aa		12.05	□□□□□ -0.48
CSMD1-208	ENST00000520561	MED1	Q15648	1581 aa	Predicted RBP	12.05	□□□□□ -0.48
CSMD1-208	ENST00000520561	SMG6	Q86US8	1419 aa	Known RBP	12.04	□□□□□ -0.48
CSMD1-208	ENST00000520561	UBAP1L	F5GYI3	381 aa		12.04	□□□□□ -0.48
CSMD1-208	ENST00000520561	NUTM2G	Q5VZR2	741 aa		12.04	□□□□□ -0.48
CSMD1-208	ENST00000520561	SLIT3	O75094	1523 aa		12.04	□□□□□ -0.48
CSMD1-208	ENST00000520561	CDK12	Q9NYV4	1490 aa	Predicted RBP	12.03	□□□□□ -0.48
CSMD1-208	ENST00000520561	SOS2	Q07890	1332 aa	Predicted RBP	12.03	□□□□□ -0.48
CSMD1-208	ENST00000520561	SPATA31A3	Q5VYP0	1347 aa		12.03	□□□□□ -0.48
CSMD1-208	ENST00000520561	PHRF1	Q9P1Y6	1649 aa	Known RBP	12.02	□□□□□ -0.49
CSMD1-208	ENST00000520561	CCDC184	Q52MB2	194 aa		12.02	□□□□□ -0.49
CSMD1-208	ENST00000520561	KCNH5	Q8NCM2	988 aa		12.02	□□□□□ -0.49
CSMD1-208	ENST00000520561	USP19	O94966	1318 aa		12.02	□□□□□ -0.49
CSMD1-208	ENST00000520561	PHLPP1	O60346	1717 aa		12.02	□□□□□ -0.49
CSMD1-208	ENST00000520561	NFAT5	O94916	1531 aa		12.01	□□□□□ -0.49
CSMD1-208	ENST00000520561	SOX12	O15370	315 aa		12.01	□□□□□ -0.49
CSMD1-208	ENST00000520561	MTHFS	P49914	203 aa		12.01	□□□□□ -0.49
CSMD1-208	ENST00000520561	PIP4K2B	P78356	416 aa		12.01	□□□□□ -0.49
CSMD1-208	ENST00000520561	MAP2	P11137	1827 aa	Known RBP	12	□□□□□ -0.49
CSMD1-208	ENST00000520561	WDR43	Q15061	677 aa	Known RBP eCLIP	12	□□□□□ -0.49
CSMD1-208	ENST00000520561	POLK	Q9UBT6	870 aa		12	□□□□□ -0.49
CSMD1-208	ENST00000520561	COL16A1	Q07092	1604 aa	Predicted RBP	12	□□□□□ -0.49
CSMD1-208	ENST00000520561	CRYBG1	Q9Y4K1	1723 aa		12	□□□□□ -0.49
CSMD1-208	ENST00000520561	PPM1G	O15355	546 aa	Predicted RBP	11.99	□□□□□ -0.49
CSMD1-208	ENST00000520561	RRS1	Q15050	365 aa	Known RBP	11.99	□□□□□ -0.49
CSMD1-208	ENST00000520561	FAM9B	Q8IZU0	186 aa		11.99	□□□□□ -0.49
CSMD1-208	ENST00000520561	EMILIN1	Q9Y6C2	1016 aa		11.99	□□□□□ -0.49
CSMD1-208	ENST00000520561	RTL1	A6NKG5	1358 aa		11.99	□□□□□ -0.49
CSMD1-208	ENST00000520561	KIF24	Q5T7B8	1368 aa		11.99	□□□□□ -0.49
CSMD1-208	ENST00000520561	COL3A1	P02461	1466 aa	Predicted RBP	11.99	□□□□□ -0.49
CSMD1-208	ENST00000520561	SHPRH	Q149N8	1683 aa		11.99	□□□□□ -0.49
CSMD1-208	ENST00000520561	ABCA3	Q99758	1704 aa		11.99	□□□□□ -0.49
CSMD1-208	ENST00000520561	LTN1	O94822	1766 aa		11.98	□□□□□ -0.49
CSMD1-208	ENST00000520561	PEAK1	Q9H792	1746 aa		11.98	□□□□□ -0.49
CSMD1-208	ENST00000520561	FLT4	P35916	1363 aa		11.98	□□□□□ -0.49
CSMD1-208	ENST00000520561	MAP3K19	Q56UN5	1328 aa		11.98	□□□□□ -0.49
CSMD1-208	ENST00000520561	COL22A1	Q8NFW1	1626 aa	Predicted RBP	11.97	□□□□□ -0.49
CSMD1-208	ENST00000520561	INSR	P06213	1382 aa		11.97	□□□□□ -0.49
CSMD1-208	ENST00000520561	PNPLA6	Q8IY17	1366 aa		11.97	□□□□□ -0.49
CSMD1-208	ENST00000520561	PLEKHG5	O94827	1062 aa		11.97	□□□□□ -0.49
CSMD1-208	ENST00000520561	GC	P02774	474 aa		11.97	□□□□□ -0.49
CSMD1-208	ENST00000520561	PNISR	Q8TF01	805 aa	Known RBP	11.97	□□□□□ -0.49
CSMD1-208	ENST00000520561	LRRC59	Q96AG4	307 aa	Known RBP	11.97	□□□□□ -0.49
CSMD1-208	ENST00000520561	ABCC6	O95255	1503 aa		11.96	□□□□□ -0.49
CSMD1-208	ENST00000520561	FBLN1	P23142	703 aa		11.96	□□□□□ -0.49
CSMD1-208	ENST00000520561	AMPH	P49418	695 aa		11.96	□□□□□ -0.49
CSMD1-208	ENST00000520561	HAP1	P54257	671 aa	Predicted RBP	11.96	□□□□□ -0.49
CSMD1-208	ENST00000520561	NUDC	Q9Y266	331 aa		11.96	□□□□□ -0.49
CSMD1-208	ENST00000520561	ZBTB7C	A1YPR0	619 aa		11.95	□□□□□ -0.5
CSMD1-208	ENST00000520561	DIAPH1	O60610	1272 aa	Known RBP	11.95	□□□□□ -0.5
CSMD1-208	ENST00000520561	YTHDC1	Q96MU7	727 aa	Known RBP	11.95	□□□□□ -0.5
CSMD1-208	ENST00000520561	BLM	P54132	1417 aa	Predicted RBP	11.94	□□□□□ -0.5
CSMD1-208	ENST00000520561	U2SURP	O15042	1029 aa	Known RBP	11.93	□□□□□ -0.5
CSMD1-208	ENST00000520561	HOXC9	P31274	260 aa		11.93	□□□□□ -0.5
CSMD1-208	ENST00000520561	CABLES1	Q8TDN4	633 aa		11.93	□□□□□ -0.5
CSMD1-208	ENST00000520561	CPD	O75976	1380 aa		11.92	□□□□□ -0.5

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