RNA–Protein interactions for RNA: ENST00000520286.5

LSM1-202, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best)

Gene LSM1, Length 776 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-202ENST00000520286 TBC1D9Q6ZT07 1266 aa12.98□□□□□ -0.33
LSM1-202ENST00000520286 THAP11Q96EK4 314 aa12.98□□□□□ -0.33
LSM1-202ENST00000520286 FAM163AQ96GL9 167 aaPredicted RBP12.98□□□□□ -0.33
LSM1-202ENST00000520286 JUNDP17535 347 aa12.97□□□□□ -0.33
LSM1-202ENST00000520286 PTPRNQ16849 979 aa12.96□□□□□ -0.33
LSM1-202ENST00000520286 CDCA8Q53HL2 280 aa12.96□□□□□ -0.33
LSM1-202ENST00000520286 MAP10Q9P2G4 905 aa12.96□□□□□ -0.33
LSM1-202ENST00000520286 ATP9BO43861 1147 aa12.95□□□□□ -0.34
LSM1-202ENST00000520286 GZF1Q9H116 711 aaPredicted RBP12.95□□□□□ -0.34
LSM1-202ENST00000520286 ZC3H4Q9UPT8 1303 aaKnown RBP12.94□□□□□ -0.34
LSM1-202ENST00000520286 PATL2C9JE40 543 aaKnown RBP12.94□□□□□ -0.34
LSM1-202ENST00000520286 ATG7O95352 703 aa12.94□□□□□ -0.34
LSM1-202ENST00000520286 BRD1O95696 1058 aa12.94□□□□□ -0.34
LSM1-202ENST00000520286 ANKRD13DQ6ZTN6 518 aa12.94□□□□□ -0.34
LSM1-202ENST00000520286 WNT2BQ93097 391 aa12.94□□□□□ -0.34
LSM1-202ENST00000520286 CTHP32929 405 aa12.93□□□□□ -0.34
LSM1-202ENST00000520286 CARNS1A5YM72 827 aa12.92□□□□□ -0.34
LSM1-202ENST00000520286 KCNA1Q09470 495 aa12.91□□□□□ -0.34
LSM1-202ENST00000520286 TMCO4Q5TGY1 634 aa12.91□□□□□ -0.34
LSM1-202ENST00000520286 MSS51Q4VC12 460 aa12.89□□□□□ -0.35
LSM1-202ENST00000520286 VRTNQ9H8Y1 702 aa12.89□□□□□ -0.35
LSM1-202ENST00000520286 PIK3CDO00329 1044 aa12.88□□□□□ -0.35
LSM1-202ENST00000520286 CCNYL3P0C7X3 344 aa12.88□□□□□ -0.35
LSM1-202ENST00000520286 NFATC2IPQ8NCF5 419 aa12.88□□□□□ -0.35
LSM1-202ENST00000520286 SPSB2Q99619 263 aa12.87□□□□□ -0.35
LSM1-202ENST00000520286 EVA1BQ9NVM1 165 aa12.87□□□□□ -0.35
LSM1-202ENST00000520286 WBP1LQ9NX94 342 aa12.87□□□□□ -0.35
LSM1-202ENST00000520286 TMEM88BA6NKF7 163 aa12.86□□□□□ -0.35
LSM1-202ENST00000520286 DXOO77932 396 aaKnown RBP12.86□□□□□ -0.35
LSM1-202ENST00000520286 FAM160A2Q8N612 972 aaPredicted RBP12.86□□□□□ -0.35
LSM1-202ENST00000520286 ARMC2Q8NEN0 867 aa12.86□□□□□ -0.35
LSM1-202ENST00000520286 NUDT12Q9BQG2 462 aa12.86□□□□□ -0.35
LSM1-202ENST00000520286 SKIP12755 728 aa12.85□□□□□ -0.35
LSM1-202ENST00000520286 PTK2Q05397 1052 aa12.85□□□□□ -0.35
LSM1-202ENST00000520286 KCNH2Q12809 1159 aa12.85□□□□□ -0.35
LSM1-202ENST00000520286 KANK4Q5T7N3 995 aaPredicted RBP12.85□□□□□ -0.35
LSM1-202ENST00000520286 GPSM3Q9Y4H4 160 aa12.85□□□□□ -0.35
LSM1-202ENST00000520286 GPKOWQ92917 476 aaPredicted RBP eCLIP12.84□□□□□ -0.35
LSM1-202ENST00000520286 USP17L3A6NCW0 530 aa12.83□□□□□ -0.36
LSM1-202ENST00000520286 USP17L4A6NCW7 530 aa12.83□□□□□ -0.36
LSM1-202ENST00000520286 MMP16P51512 607 aa12.83□□□□□ -0.36
LSM1-202ENST00000520286 COPS2P61201 443 aa12.83□□□□□ -0.36
LSM1-202ENST00000520286 PDXDC2PQ6P474 469 aa12.83□□□□□ -0.36
LSM1-202ENST00000520286 USP17L2Q6R6M4 530 aa12.83□□□□□ -0.36
LSM1-202ENST00000520286 USP17L1Q7RTZ2 530 aa12.83□□□□□ -0.36
LSM1-202ENST00000520286 PRDM9Q9NQV7 894 aa12.83□□□□□ -0.36
LSM1-202ENST00000520286 ZNF592Q92610 1267 aa12.82□□□□□ -0.36
LSM1-202ENST00000520286 USP17L5A8MUK1 530 aa12.81□□□□□ -0.36
LSM1-202ENST00000520286 MFAP1P55081 439 aaKnown RBP12.81□□□□□ -0.36
LSM1-202ENST00000520286 ELOAQ14241 798 aaKnown RBP12.81□□□□□ -0.36
LSM1-202ENST00000520286 NBPF14Q5TI25 921 aa12.81□□□□□ -0.36
LSM1-202ENST00000520286 PLEKHM2Q8IWE5 1019 aa12.81□□□□□ -0.36
LSM1-202ENST00000520286 FAM174AQ8TBP5 190 aa12.81□□□□□ -0.36
LSM1-202ENST00000520286 MCCD1P59942 119 aaPredicted RBP12.8□□□□□ -0.36
LSM1-202ENST00000520286 LCE2DQ5TA82 110 aaPredicted RBP12.8□□□□□ -0.36
LSM1-202ENST00000520286 CEP126Q9P2H0 1117 aa12.8□□□□□ -0.36
LSM1-202ENST00000520286 PCDHB9Q9Y5E1 797 aa12.8□□□□□ -0.36
LSM1-202ENST00000520286 SLFNL1Q499Z3 407 aa12.79□□□□□ -0.36
LSM1-202ENST00000520286 OCSTAMPQ9BR26 566 aa12.79□□□□□ -0.36
LSM1-202ENST00000520286 DEPDC4Q8N2C3 294 aa12.78□□□□□ -0.36
LSM1-202ENST00000520286 THSD4Q6ZMP0 1018 aa12.77□□□□□ -0.37
LSM1-202ENST00000520286 RGS22Q8NE09 1264 aa12.77□□□□□ -0.37
LSM1-202ENST00000520286 ZMIZ1Q9ULJ6 1067 aa12.77□□□□□ -0.37
LSM1-202ENST00000520286 NOVA2Q9UNW9 492 aaKnown RBP12.77□□□□□ -0.37
LSM1-202ENST00000520286 TLL1O43897 1013 aa12.76□□□□□ -0.37
LSM1-202ENST00000520286 RNF135Q8IUD6 432 aa12.76□□□□□ -0.37
LSM1-202ENST00000520286 IVNS1ABPQ9Y6Y0 642 aa12.76□□□□□ -0.37
LSM1-202ENST00000520286 ZPR1O75312 459 aa12.75□□□□□ -0.37
LSM1-202ENST00000520286 ADH1BP00325 375 aa12.75□□□□□ -0.37
LSM1-202ENST00000520286 TMEM164Q5U3C3 297 aa12.75□□□□□ -0.37
LSM1-202ENST00000520286 ADAM32Q8TC27 787 aa12.75□□□□□ -0.37
LSM1-202ENST00000520286 STK32AQ8WU08 396 aa12.75□□□□□ -0.37
LSM1-202ENST00000520286 ARHGAP9Q9BRR9 750 aa12.75□□□□□ -0.37
LSM1-202ENST00000520286 MKRN1Q9UHC7 482 aaKnown RBP12.75□□□□□ -0.37
LSM1-202ENST00000520286 MTMR7Q9Y216 660 aa12.75□□□□□ -0.37
LSM1-202ENST00000520286 B4GALNT3Q6L9W6 998 aa12.74□□□□□ -0.37
LSM1-202ENST00000520286 PHTF2Q8N3S3 785 aa12.74□□□□□ -0.37
LSM1-202ENST00000520286 CCDC24Q8N4L8 307 aa12.74□□□□□ -0.37
LSM1-202ENST00000520286 UNC93B1Q9H1C4 597 aa12.74□□□□□ -0.37
LSM1-202ENST00000520286 FAM196BA6NMK8 535 aa12.73□□□□□ -0.37
LSM1-202ENST00000520286 NCOA4Q13772 614 aa12.73□□□□□ -0.37
LSM1-202ENST00000520286 USP17L15C9J2P7 530 aa12.72□□□□□ -0.37
LSM1-202ENST00000520286 USP17L10C9JJH3 530 aa12.72□□□□□ -0.37
LSM1-202ENST00000520286 USP17L13C9JLJ4 530 aa12.72□□□□□ -0.37
LSM1-202ENST00000520286 USP17L12C9JPN9 530 aa12.72□□□□□ -0.37
LSM1-202ENST00000520286 USP17L11C9JVI0 530 aa12.72□□□□□ -0.37
LSM1-202ENST00000520286 USP17L21D6R901 530 aa12.72□□□□□ -0.37
LSM1-202ENST00000520286 USP17L18D6R9N7 530 aa12.72□□□□□ -0.37
LSM1-202ENST00000520286 USP17L22D6RA61 530 aa12.72□□□□□ -0.37
LSM1-202ENST00000520286 USP17L17D6RBQ6 530 aa12.72□□□□□ -0.37
LSM1-202ENST00000520286 USP17L19D6RCP7 530 aa12.72□□□□□ -0.37
LSM1-202ENST00000520286 USP17L20D6RJB6 530 aa12.72□□□□□ -0.37
LSM1-202ENST00000520286 USP17L24Q0WX57 530 aa12.72□□□□□ -0.37
LSM1-202ENST00000520286 NYAP1Q6ZVC0 841 aa12.72□□□□□ -0.37
LSM1-202ENST00000520286 ZBTB33Q86T24 672 aa12.72□□□□□ -0.37
LSM1-202ENST00000520286 PLPP7Q8NBV4 271 aa12.72□□□□□ -0.37
LSM1-202ENST00000520286 LZTS3O60299 673 aaPredicted RBP12.71□□□□□ -0.37
LSM1-202ENST00000520286 CRTC2Q53ET0 693 aaPredicted RBP12.71□□□□□ -0.37
LSM1-202ENST00000520286 PTCRAQ6ISU1 281 aaPredicted RBP12.71□□□□□ -0.37
LSM1-202ENST00000520286 LARP1Q6PKG0 1096 aaKnown RBP12.71□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms