RNA–Protein interactions for RNA: ENST00000520229.1

PDGFRB-206, Transcript of platelet derived growth factor receptor beta, humanhuman

TSL 3

Gene PDGFRB, Length 738 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFRB-206ENST00000520229 TOPAZ1Q8N9V7 1692 aa21.97■■□□□ 1.11
PDGFRB-206ENST00000520229 ARHGEF10O15013 1369 aa21.96■■□□□ 1.11
PDGFRB-206ENST00000520229 NWD2Q9ULI1 1742 aa21.95■■□□□ 1.1
PDGFRB-206ENST00000520229 CABP2Q9NPB3 220 aa21.95■■□□□ 1.1
PDGFRB-206ENST00000520229 EVC2Q86UK5 1308 aa21.95■■□□□ 1.1
PDGFRB-206ENST00000520229 TRPC5Q9UL62 973 aaPredicted RBP21.94■■□□□ 1.1
PDGFRB-206ENST00000520229 NRAPQ86VF7 1730 aa21.94■■□□□ 1.1
PDGFRB-206ENST00000520229 HAP1P54257 671 aaPredicted RBP21.93■■□□□ 1.1
PDGFRB-206ENST00000520229 PLEKHG5O94827 1062 aa21.92■■□□□ 1.1
PDGFRB-206ENST00000520229 CCER1Q8TC90 406 aaPredicted RBP21.92■■□□□ 1.1
PDGFRB-206ENST00000520229 PPIP5K1Q6PFW1 1433 aa21.91■■□□□ 1.1
PDGFRB-206ENST00000520229 POLR3AO14802 1390 aaPredicted RBP21.91■■□□□ 1.1
PDGFRB-206ENST00000520229 ACEP12821 1306 aa21.91■■□□□ 1.1
PDGFRB-206ENST00000520229 PLEKHG3A1L390 1219 aa21.91■■□□□ 1.1
PDGFRB-206ENST00000520229 PAK3O75914 559 aaPredicted RBP21.91■■□□□ 1.1
PDGFRB-206ENST00000520229 SRCAPQ6ZRS2 3230 aa21.9■■□□□ 1.1
PDGFRB-206ENST00000520229 TIMELESSQ9UNS1 1208 aa21.9■■□□□ 1.1
PDGFRB-206ENST00000520229 BRWD3Q6RI45 1802 aa21.9■■□□□ 1.1
PDGFRB-206ENST00000520229 SBNO2Q9Y2G9 1366 aa21.88■■□□□ 1.09
PDGFRB-206ENST00000520229 CABLES1Q8TDN4 633 aa21.88■■□□□ 1.09
PDGFRB-206ENST00000520229 UNC5CLQ8IV45 518 aa21.85■■□□□ 1.09
PDGFRB-206ENST00000520229 CABP1Q9NZU7 370 aa21.85■■□□□ 1.09
PDGFRB-206ENST00000520229 ATAD2Q6PL18 1390 aa21.85■■□□□ 1.09
PDGFRB-206ENST00000520229 GJD4Q96KN9 370 aaPredicted RBP21.84■■□□□ 1.09
PDGFRB-206ENST00000520229 PHRF1Q9P1Y6 1649 aaKnown RBP21.83■■□□□ 1.08
PDGFRB-206ENST00000520229 COL14A1Q05707 1796 aaKnown RBP21.82■■□□□ 1.08
PDGFRB-206ENST00000520229 BRD4O60885 1362 aaPredicted RBP21.79■■□□□ 1.08
PDGFRB-206ENST00000520229 ST20-MTHFSA0A0A6YYL1 179 aa21.79■■□□□ 1.08
PDGFRB-206ENST00000520229 USP6P35125 1406 aa21.79■■□□□ 1.08
PDGFRB-206ENST00000520229 USP47Q96K76 1375 aa21.78■■□□□ 1.08
PDGFRB-206ENST00000520229 NUTM2GQ5VZR2 741 aa21.78■■□□□ 1.08
PDGFRB-206ENST00000520229 FAM83GA6ND36 823 aa21.77■■□□□ 1.08
PDGFRB-206ENST00000520229 VPS72Q15906 364 aa21.77■■□□□ 1.08
PDGFRB-206ENST00000520229 ABTB2Q8N961 1025 aa21.77■■□□□ 1.08
PDGFRB-206ENST00000520229 ONECUT3O60422 494 aaPredicted RBP21.75■■□□□ 1.07
PDGFRB-206ENST00000520229 SLC24A1O60721 1099 aa21.75■■□□□ 1.07
PDGFRB-206ENST00000520229 TESK2Q96S53 571 aa21.75■■□□□ 1.07
PDGFRB-206ENST00000520229 THSD7AQ9UPZ6 1657 aa21.75■■□□□ 1.07
PDGFRB-206ENST00000520229 ZNF692Q9BU19 519 aaPredicted RBP21.74■■□□□ 1.07
PDGFRB-206ENST00000520229 NRKQ7Z2Y5 1582 aa21.74■■□□□ 1.07
PDGFRB-206ENST00000520229 NLRP13Q86W25 1043 aa21.72■■□□□ 1.07
PDGFRB-206ENST00000520229 TMC1Q8TDI8 760 aa21.72■■□□□ 1.07
PDGFRB-206ENST00000520229 PUS7Q96PZ0 661 aaKnown RBP21.72■■□□□ 1.07
PDGFRB-206ENST00000520229 PRDM11Q9NQV5 511 aa21.72■■□□□ 1.07
PDGFRB-206ENST00000520229 AKAP12Q02952 1782 aa21.71■■□□□ 1.07
PDGFRB-206ENST00000520229 USP19O94966 1318 aa21.71■■□□□ 1.07
PDGFRB-206ENST00000520229 KTN1Q86UP2 1357 aaKnown RBP21.71■■□□□ 1.07
PDGFRB-206ENST00000520229 CPSF1Q10570 1443 aaKnown RBP21.71■■□□□ 1.07
PDGFRB-206ENST00000520229 SSH2Q76I76 1423 aa21.71■■□□□ 1.07
PDGFRB-206ENST00000520229 LMO7Q8WWI1 1683 aa21.7■■□□□ 1.06
PDGFRB-206ENST00000520229 KIAA0232Q92628 1395 aa21.69■■□□□ 1.06
PDGFRB-206ENST00000520229 NLRP6P59044 892 aa21.68■■□□□ 1.06
PDGFRB-206ENST00000520229 ZC3H6P61129 1189 aaKnown RBP21.68■■□□□ 1.06
PDGFRB-206ENST00000520229 TMF1P82094 1093 aa21.68■■□□□ 1.06
PDGFRB-206ENST00000520229 HDGFL2Q7Z4V5 671 aaPredicted RBP21.68■■□□□ 1.06
PDGFRB-206ENST00000520229 BTG4Q9NY30 223 aa21.68■■□□□ 1.06
PDGFRB-206ENST00000520229 TTC21BQ7Z4L5 1316 aa21.68■■□□□ 1.06
PDGFRB-206ENST00000520229 TTC21AQ8NDW8 1320 aa21.67■■□□□ 1.06
PDGFRB-206ENST00000520229 SEPT12Q8IYM1 358 aa21.67■■□□□ 1.06
PDGFRB-206ENST00000520229 SLC12A5Q9H2X9 1139 aa21.67■■□□□ 1.06
PDGFRB-206ENST00000520229 CCDC9Q9Y3X0 531 aaKnown RBP21.67■■□□□ 1.06
PDGFRB-206ENST00000520229 PIK3C2AO00443 1686 aa21.66■■□□□ 1.06
PDGFRB-206ENST00000520229 BLMP54132 1417 aaPredicted RBP21.66■■□□□ 1.06
PDGFRB-206ENST00000520229 NINLQ9Y2I6 1382 aa21.66■■□□□ 1.06
PDGFRB-206ENST00000520229 MON2Q7Z3U7 1717 aa21.66■■□□□ 1.06
PDGFRB-206ENST00000520229 CD163L1Q9NR16 1453 aa21.65■■□□□ 1.06
PDGFRB-206ENST00000520229 GCP02774 474 aa21.65■■□□□ 1.06
PDGFRB-206ENST00000520229 CHRNA2Q15822 529 aa21.65■■□□□ 1.06
PDGFRB-206ENST00000520229 TERF2IPQ9NYB0 399 aa21.65■■□□□ 1.06
PDGFRB-206ENST00000520229 CPDO75976 1380 aa21.63■■□□□ 1.05
PDGFRB-206ENST00000520229 SPATA31A5Q5VU36 1347 aa21.63■■□□□ 1.05
PDGFRB-206ENST00000520229 SPATA31A7Q8IWB4 1347 aa21.63■■□□□ 1.05
PDGFRB-206ENST00000520229 SLIT3O75094 1523 aa21.63■■□□□ 1.05
PDGFRB-206ENST00000520229 CDCA8Q53HL2 280 aa21.62■■□□□ 1.05
PDGFRB-206ENST00000520229 CCDC125Q86Z20 511 aa21.62■■□□□ 1.05
PDGFRB-206ENST00000520229 SUGP2Q8IX01 1082 aaKnown RBP eCLIP21.62■■□□□ 1.05
PDGFRB-206ENST00000520229 TNS1Q9HBL0 1735 aaKnown RBP21.62■■□□□ 1.05
PDGFRB-206ENST00000520229 A0A1W2PP64 1363 aa21.61■■□□□ 1.05
PDGFRB-206ENST00000520229 CAMTA1Q9Y6Y1 1673 aa21.61■■□□□ 1.05
PDGFRB-206ENST00000520229 EDC4Q6P2E9 1401 aaKnown RBP21.61■■□□□ 1.05
PDGFRB-206ENST00000520229 ZBTB7CA1YPR0 619 aa21.59■■□□□ 1.05
PDGFRB-206ENST00000520229 STRN4Q9NRL3 753 aa21.59■■□□□ 1.05
PDGFRB-206ENST00000520229 COL18A1P39060 1754 aa21.57■■□□□ 1.04
PDGFRB-206ENST00000520229 EIF4G2P78344 907 aaKnown RBP eCLIP21.57■■□□□ 1.04
PDGFRB-206ENST00000520229 FAM98CQ17RN3 349 aaKnown RBP21.57■■□□□ 1.04
PDGFRB-206ENST00000520229 KCNH5Q8NCM2 988 aa21.57■■□□□ 1.04
PDGFRB-206ENST00000520229 RGPD1P0DJD0 1748 aa21.56■■□□□ 1.04
PDGFRB-206ENST00000520229 SOX12O15370 315 aa21.56■■□□□ 1.04
PDGFRB-206ENST00000520229 EVA1CP58658 441 aa21.56■■□□□ 1.04
PDGFRB-206ENST00000520229 KRT27Q7Z3Y8 459 aa21.56■■□□□ 1.04
PDGFRB-206ENST00000520229 NME9Q86XW9 330 aa21.56■■□□□ 1.04
PDGFRB-206ENST00000520229 ANKRD36BQ8N2N9 1353 aa21.56■■□□□ 1.04
PDGFRB-206ENST00000520229 SPATA31A1Q5TZJ5 1347 aa21.55■■□□□ 1.04
PDGFRB-206ENST00000520229 A0A0G2JS52 829 aa21.55■■□□□ 1.04
PDGFRB-206ENST00000520229 MYT1Q01538 1121 aa21.55■■□□□ 1.04
PDGFRB-206ENST00000520229 ZRANB1Q9UGI0 708 aa21.55■■□□□ 1.04
PDGFRB-206ENST00000520229 USP31Q70CQ4 1352 aa21.55■■□□□ 1.04
PDGFRB-206ENST00000520229 HSPA5P11021 654 aaKnown RBP21.54■■□□□ 1.04
PDGFRB-206ENST00000520229 DEFB132Q7Z7B7 95 aa21.54■■□□□ 1.04
PDGFRB-206ENST00000520229 AATKQ6ZMQ8 1374 aa21.53■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms