RNA–Protein interactions for RNA: ENST00000519485.1

CSMD3-209, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 3

Gene CSMD3, Length 452 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-209ENST00000519485 TLL2Q9Y6L7 1015 aa8.23□□□□□ -1.09
CSMD3-209ENST00000519485 NNTQ13423 1086 aa8.22□□□□□ -1.09
CSMD3-209ENST00000519485 DIXDC1Q155Q3 683 aa8.22□□□□□ -1.09
CSMD3-209ENST00000519485 BARGINQ6ZT62 677 aa8.22□□□□□ -1.09
CSMD3-209ENST00000519485 CDK15Q96Q40 435 aa8.22□□□□□ -1.09
CSMD3-209ENST00000519485 KLF16Q9BXK1 252 aaPredicted RBP8.22□□□□□ -1.09
CSMD3-209ENST00000519485 VSIG8P0DPA2 414 aa8.21□□□□□ -1.1
CSMD3-209ENST00000519485 MRPL14Q6P1L8 145 aaKnown RBP8.21□□□□□ -1.1
CSMD3-209ENST00000519485 LYPD8Q6UX82 237 aa8.21□□□□□ -1.1
CSMD3-209ENST00000519485 ZMYND10O75800 440 aa8.2□□□□□ -1.1
CSMD3-209ENST00000519485 ADH1CP00326 375 aa8.2□□□□□ -1.1
CSMD3-209ENST00000519485 TIMP2P16035 220 aa8.2□□□□□ -1.1
CSMD3-209ENST00000519485 LINC01559Q495D7 138 aa8.2□□□□□ -1.1
CSMD3-209ENST00000519485 ERBB4Q15303 1308 aa8.2□□□□□ -1.1
CSMD3-209ENST00000519485 TTLL12Q14166 644 aaPredicted RBP8.19□□□□□ -1.1
CSMD3-209ENST00000519485 RSBN1LQ6PCB5 846 aaPredicted RBP8.19□□□□□ -1.1
CSMD3-209ENST00000519485 GIGYF2Q6Y7W6 1299 aaKnown RBP8.19□□□□□ -1.1
CSMD3-209ENST00000519485 FAM174AQ8TBP5 190 aa8.19□□□□□ -1.1
CSMD3-209ENST00000519485 F12P00748 615 aaPredicted RBP8.18□□□□□ -1.1
CSMD3-209ENST00000519485 SCARF1Q14162 830 aa8.18□□□□□ -1.1
CSMD3-209ENST00000519485 WDR4P57081 412 aaKnown RBP8.17□□□□□ -1.1
CSMD3-209ENST00000519485 BEGAINQ9BUH8 593 aa8.17□□□□□ -1.1
CSMD3-209ENST00000519485 SPTLC1O15269 473 aa8.16□□□□□ -1.1
CSMD3-209ENST00000519485 VEGFBP49765 207 aa8.16□□□□□ -1.1
CSMD3-209ENST00000519485 NR5A1Q13285 461 aa8.16□□□□□ -1.1
CSMD3-209ENST00000519485 PRPF38BQ5VTL8 546 aaKnown RBP8.16□□□□□ -1.1
CSMD3-209ENST00000519485 TBC1D2Q9BYX2 928 aa8.16□□□□□ -1.1
CSMD3-209ENST00000519485 CFAP99D6REC4 459 aa8.14□□□□□ -1.11
CSMD3-209ENST00000519485 PURBQ96QR8 312 aaKnown RBP8.14□□□□□ -1.11
CSMD3-209ENST00000519485 ZBTB3Q9H5J0 574 aa8.14□□□□□ -1.11
CSMD3-209ENST00000519485 HRCP23327 699 aa8.13□□□□□ -1.11
CSMD3-209ENST00000519485 CTHP32929 405 aa8.13□□□□□ -1.11
CSMD3-209ENST00000519485 TUSC1Q2TAM9 212 aa8.12□□□□□ -1.11
CSMD3-209ENST00000519485 ZC3H15Q8WU90 426 aaKnown RBP8.12□□□□□ -1.11
CSMD3-209ENST00000519485 FOXJ1Q92949 421 aa8.12□□□□□ -1.11
CSMD3-209ENST00000519485 PCDHB15Q9Y5E8 787 aa8.12□□□□□ -1.11
CSMD3-209ENST00000519485 GRM5P41594 1212 aa8.11□□□□□ -1.11
CSMD3-209ENST00000519485 BPHLQ86WA6 291 aaPredicted RBP8.11□□□□□ -1.11
CSMD3-209ENST00000519485 PARP9Q8IXQ6 854 aa8.11□□□□□ -1.11
CSMD3-209ENST00000519485 MAP10Q9P2G4 905 aa8.11□□□□□ -1.11
CSMD3-209ENST00000519485 ZIC2O95409 532 aaPredicted RBP8.1□□□□□ -1.11
CSMD3-209ENST00000519485 C4orf48Q5BLP8 95 aa8.1□□□□□ -1.11
CSMD3-209ENST00000519485 ITPKCQ96DU7 683 aa8.1□□□□□ -1.11
CSMD3-209ENST00000519485 C1QTNF2Q9BXJ5 285 aa8.1□□□□□ -1.11
CSMD3-209ENST00000519485 NR3C2P08235 984 aa8.09□□□□□ -1.11
CSMD3-209ENST00000519485 RIC3Q7Z5B4 369 aa8.09□□□□□ -1.11
CSMD3-209ENST00000519485 ARMC2Q8NEN0 867 aa8.09□□□□□ -1.11
CSMD3-209ENST00000519485 ZFAND3Q9H8U3 227 aa8.09□□□□□ -1.11
CSMD3-209ENST00000519485 MAP4K5Q9Y4K4 846 aa8.09□□□□□ -1.11
CSMD3-209ENST00000519485 SH3RF1Q7Z6J0 888 aa8.08□□□□□ -1.12
CSMD3-209ENST00000519485 MEIOBQ8N635 442 aa8.08□□□□□ -1.12
CSMD3-209ENST00000519485 LOC100996750A0A140TA64 210 aa8.07□□□□□ -1.12
CSMD3-209ENST00000519485 SOBPA7XYQ1 873 aa8.07□□□□□ -1.12
CSMD3-209ENST00000519485 TRIM66O15016 1216 aa8.07□□□□□ -1.12
CSMD3-209ENST00000519485 TRMT44Q8IYL2 757 aaKnown RBP8.07□□□□□ -1.12
CSMD3-209ENST00000519485 LINC00528Q8N1L1 170 aa8.07□□□□□ -1.12
CSMD3-209ENST00000519485 KRTAP4-6Q9BYQ5 205 aa8.07□□□□□ -1.12
CSMD3-209ENST00000519485 SOS2Q07890 1332 aaPredicted RBP8.06□□□□□ -1.12
CSMD3-209ENST00000519485 PER1O15534 1290 aaPredicted RBP8.06□□□□□ -1.12
CSMD3-209ENST00000519485 MAN1A2O60476 641 aa8.06□□□□□ -1.12
CSMD3-209ENST00000519485 UPP2O95045 317 aa8.06□□□□□ -1.12
CSMD3-209ENST00000519485 ARID5BQ14865 1188 aa8.06□□□□□ -1.12
CSMD3-209ENST00000519485 PPFIA3O75145 1194 aa8.05□□□□□ -1.12
CSMD3-209ENST00000519485 CABLES1Q8TDN4 633 aa8.05□□□□□ -1.12
CSMD3-209ENST00000519485 LILRB3O75022 631 aa8.04□□□□□ -1.12
CSMD3-209ENST00000519485 KCNMA1Q12791 1236 aa8.04□□□□□ -1.12
CSMD3-209ENST00000519485 AGERQ15109 404 aa8.04□□□□□ -1.12
CSMD3-209ENST00000519485 NBPF14Q5TI25 921 aa8.04□□□□□ -1.12
CSMD3-209ENST00000519485 SH3BP5LQ7L8J4 393 aa8.04□□□□□ -1.12
CSMD3-209ENST00000519485 BMP2P12643 396 aa8.03□□□□□ -1.12
CSMD3-209ENST00000519485 C6orf118Q5T5N4 469 aa8.03□□□□□ -1.12
CSMD3-209ENST00000519485 GPKOWQ92917 476 aaPredicted RBP eCLIP8.03□□□□□ -1.12
CSMD3-209ENST00000519485 AK7Q96M32 723 aa8.03□□□□□ -1.12
CSMD3-209ENST00000519485 EMILIN1Q9Y6C2 1016 aa8.03□□□□□ -1.12
CSMD3-209ENST00000519485 MYSM1Q5VVJ2 828 aa8.02□□□□□ -1.13
CSMD3-209ENST00000519485 TSEN34Q9BSV6 310 aaKnown RBP8.02□□□□□ -1.13
CSMD3-209ENST00000519485 DNMT3LQ9UJW3 386 aa8.02□□□□□ -1.13
CSMD3-209ENST00000519485 FSHRP23945 695 aa8.01□□□□□ -1.13
CSMD3-209ENST00000519485 QPCTQ16769 361 aa8.01□□□□□ -1.13
CSMD3-209ENST00000519485 LIMD1Q9UGP4 676 aa8.01□□□□□ -1.13
CSMD3-209ENST00000519485 GSK3AP49840 483 aa8□□□□□ -1.13
CSMD3-209ENST00000519485 ZNF800Q2TB10 664 aaPredicted RBP eCLIP8□□□□□ -1.13
CSMD3-209ENST00000519485 CCDC116Q8IYX3 515 aa8□□□□□ -1.13
CSMD3-209ENST00000519485 HELBQ8NG08 1087 aaPredicted RBP8□□□□□ -1.13
CSMD3-209ENST00000519485 Q6ZVU0 165 aa7.99□□□□□ -1.13
CSMD3-209ENST00000519485 VASH1Q7L8A9 365 aaPredicted RBP7.99□□□□□ -1.13
CSMD3-209ENST00000519485 NANOS1Q8WY41 292 aaKnown RBP7.99□□□□□ -1.13
CSMD3-209ENST00000519485 NUTM2BA6NNL0 878 aaPredicted RBP7.98□□□□□ -1.13
CSMD3-209ENST00000519485 NUTM2EB1AL46 878 aaPredicted RBP7.98□□□□□ -1.13
CSMD3-209ENST00000519485 CSPP1Q1MSJ5 1256 aa7.98□□□□□ -1.13
CSMD3-209ENST00000519485 NUTM2DQ5VT03 806 aaPredicted RBP7.98□□□□□ -1.13
CSMD3-209ENST00000519485 NUTM2AQ8IVF1 878 aaPredicted RBP7.98□□□□□ -1.13
CSMD3-209ENST00000519485 TTLL8A6PVC2 850 aa7.97□□□□□ -1.13
CSMD3-209ENST00000519485 KRT76Q01546 638 aa7.96□□□□□ -1.14
CSMD3-209ENST00000519485 CDV3Q9UKY7 258 aaKnown RBP7.96□□□□□ -1.14
CSMD3-209ENST00000519485 SPINT1O43278 529 aa7.95□□□□□ -1.14
CSMD3-209ENST00000519485 PTSQ03393 145 aa7.95□□□□□ -1.14
CSMD3-209ENST00000519485 PDE4DQ08499 809 aa7.95□□□□□ -1.14
CSMD3-209ENST00000519485 ERFEQ4G0M1 354 aa7.95□□□□□ -1.14
CSMD3-209ENST00000519485 PDXDC2PQ6P474 469 aa7.95□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms