RNA–Protein interactions for RNA: ENST00000513996.5

HERC4-214, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase 4, humanhuman

TSL 3

Gene HERC4, Length 944 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC4-214ENST00000513996 GPRASP1Q5JY77 1395 aa12.5□□□□□ -0.41
HERC4-214ENST00000513996 BCL9LQ86UU0 1499 aa12.5□□□□□ -0.41
HERC4-214ENST00000513996 TRPM1Q7Z4N2 1603 aa12.49□□□□□ -0.41
HERC4-214ENST00000513996 ARHGEF10O15013 1369 aa12.48□□□□□ -0.41
HERC4-214ENST00000513996 FAM83GA6ND36 823 aa12.48□□□□□ -0.41
HERC4-214ENST00000513996 PAK3O75914 559 aaPredicted RBP12.48□□□□□ -0.41
HERC4-214ENST00000513996 SRPK2P78362 688 aaKnown RBP12.48□□□□□ -0.41
HERC4-214ENST00000513996 TRPC5Q9UL62 973 aaPredicted RBP12.48□□□□□ -0.41
HERC4-214ENST00000513996 TRPM3Q9HCF6 1732 aaPredicted RBP12.48□□□□□ -0.41
HERC4-214ENST00000513996 ATRNO75882 1429 aa12.47□□□□□ -0.41
HERC4-214ENST00000513996 POLR3AO14802 1390 aaPredicted RBP12.47□□□□□ -0.41
HERC4-214ENST00000513996 TONSLQ96HA7 1378 aa12.47□□□□□ -0.41
HERC4-214ENST00000513996 MYCNP04198 464 aaPredicted RBP12.47□□□□□ -0.41
HERC4-214ENST00000513996 HAP1P54257 671 aaPredicted RBP12.46□□□□□ -0.41
HERC4-214ENST00000513996 NUTM2GQ5VZR2 741 aa12.46□□□□□ -0.41
HERC4-214ENST00000513996 UNC5CLQ8IV45 518 aa12.46□□□□□ -0.41
HERC4-214ENST00000513996 CARD11Q9BXL7 1154 aa12.46□□□□□ -0.41
HERC4-214ENST00000513996 PCGF6Q9BYE7 350 aa12.46□□□□□ -0.41
HERC4-214ENST00000513996 CABP1Q9NZU7 370 aa12.46□□□□□ -0.41
HERC4-214ENST00000513996 SLIT2O94813 1529 aa12.46□□□□□ -0.42
HERC4-214ENST00000513996 CDK12Q9NYV4 1490 aaPredicted RBP12.45□□□□□ -0.42
HERC4-214ENST00000513996 RGS12O14924 1447 aa12.45□□□□□ -0.42
HERC4-214ENST00000513996 EVC2Q86UK5 1308 aa12.44□□□□□ -0.42
HERC4-214ENST00000513996 UPF1Q92900 1129 aaKnown RBP eCLIP12.44□□□□□ -0.42
HERC4-214ENST00000513996 GJD4Q96KN9 370 aaPredicted RBP12.44□□□□□ -0.42
HERC4-214ENST00000513996 ALS2Q96Q42 1657 aa12.44□□□□□ -0.42
HERC4-214ENST00000513996 PPIP5K1Q6PFW1 1433 aa12.44□□□□□ -0.42
HERC4-214ENST00000513996 MARF1Q9Y4F3 1742 aaKnown RBP12.43□□□□□ -0.42
HERC4-214ENST00000513996 QRICH2Q9H0J4 1663 aa12.43□□□□□ -0.42
HERC4-214ENST00000513996 TOPAZ1Q8N9V7 1692 aa12.42□□□□□ -0.42
HERC4-214ENST00000513996 RALGAPBQ86X10 1494 aa12.41□□□□□ -0.42
HERC4-214ENST00000513996 ABTB2Q8N961 1025 aa12.41□□□□□ -0.42
HERC4-214ENST00000513996 ITSN1Q15811 1721 aa12.4□□□□□ -0.42
HERC4-214ENST00000513996 VPS72Q15906 364 aa12.4□□□□□ -0.42
HERC4-214ENST00000513996 BTG4Q9NY30 223 aa12.4□□□□□ -0.42
HERC4-214ENST00000513996 ABCA3Q99758 1704 aa12.4□□□□□ -0.43
HERC4-214ENST00000513996 ZC3H6P61129 1189 aaKnown RBP12.39□□□□□ -0.43
HERC4-214ENST00000513996 CHRNA2Q15822 529 aa12.39□□□□□ -0.43
HERC4-214ENST00000513996 SSH2Q76I76 1423 aa12.38□□□□□ -0.43
HERC4-214ENST00000513996 ST20-MTHFSA0A0A6YYL1 179 aa12.38□□□□□ -0.43
HERC4-214ENST00000513996 TESK2Q96S53 571 aa12.38□□□□□ -0.43
HERC4-214ENST00000513996 PRDM11Q9NQV5 511 aa12.38□□□□□ -0.43
HERC4-214ENST00000513996 KIAA0232Q92628 1395 aa12.38□□□□□ -0.43
HERC4-214ENST00000513996 SBNO2Q9Y2G9 1366 aa12.38□□□□□ -0.43
HERC4-214ENST00000513996 USP19O94966 1318 aa12.37□□□□□ -0.43
HERC4-214ENST00000513996 USP6P35125 1406 aa12.37□□□□□ -0.43
HERC4-214ENST00000513996 CRYBG1Q9Y4K1 1723 aa12.37□□□□□ -0.43
HERC4-214ENST00000513996 ONECUT3O60422 494 aaPredicted RBP12.37□□□□□ -0.43
HERC4-214ENST00000513996 NLRP13Q86W25 1043 aa12.37□□□□□ -0.43
HERC4-214ENST00000513996 CCDC9Q9Y3X0 531 aaKnown RBP12.37□□□□□ -0.43
HERC4-214ENST00000513996 GLI3P10071 1580 aa12.37□□□□□ -0.43
HERC4-214ENST00000513996 GCP02774 474 aa12.36□□□□□ -0.43
HERC4-214ENST00000513996 ZNF692Q9BU19 519 aaPredicted RBP12.36□□□□□ -0.43
HERC4-214ENST00000513996 SLC12A5Q9H2X9 1139 aa12.36□□□□□ -0.43
HERC4-214ENST00000513996 TNKS1BP1Q9C0C2 1729 aaKnown RBP12.36□□□□□ -0.43
HERC4-214ENST00000513996 TTC21BQ7Z4L5 1316 aa12.36□□□□□ -0.43
HERC4-214ENST00000513996 BRD4O60885 1362 aaPredicted RBP12.35□□□□□ -0.43
HERC4-214ENST00000513996 ATAD2Q6PL18 1390 aa12.35□□□□□ -0.43
HERC4-214ENST00000513996 NLRP6P59044 892 aa12.35□□□□□ -0.43
HERC4-214ENST00000513996 SEPT12Q8IYM1 358 aa12.35□□□□□ -0.43
HERC4-214ENST00000513996 CPSF1Q10570 1443 aaKnown RBP12.35□□□□□ -0.43
HERC4-214ENST00000513996 PLCH1Q4KWH8 1693 aa12.35□□□□□ -0.43
HERC4-214ENST00000513996 CLSPNQ9HAW4 1339 aa12.35□□□□□ -0.43
HERC4-214ENST00000513996 ZRANB1Q9UGI0 708 aa12.34□□□□□ -0.43
HERC4-214ENST00000513996 SPATA31A5Q5VU36 1347 aa12.34□□□□□ -0.43
HERC4-214ENST00000513996 SPATA31A7Q8IWB4 1347 aa12.34□□□□□ -0.43
HERC4-214ENST00000513996 NWD2Q9ULI1 1742 aa12.34□□□□□ -0.43
HERC4-214ENST00000513996 FAM98CQ17RN3 349 aaKnown RBP12.33□□□□□ -0.44
HERC4-214ENST00000513996 TMC1Q8TDI8 760 aa12.33□□□□□ -0.44
HERC4-214ENST00000513996 TIMELESSQ9UNS1 1208 aa12.33□□□□□ -0.44
HERC4-214ENST00000513996 COL14A1Q05707 1796 aaKnown RBP12.33□□□□□ -0.44
HERC4-214ENST00000513996 CPDO75976 1380 aa12.32□□□□□ -0.44
HERC4-214ENST00000513996 NRAPQ86VF7 1730 aa12.32□□□□□ -0.44
HERC4-214ENST00000513996 PUS7Q96PZ0 661 aaKnown RBP12.32□□□□□ -0.44
HERC4-214ENST00000513996 STRN4Q9NRL3 753 aa12.32□□□□□ -0.44
HERC4-214ENST00000513996 PHRF1Q9P1Y6 1649 aaKnown RBP12.32□□□□□ -0.44
HERC4-214ENST00000513996 CD163L1Q9NR16 1453 aa12.32□□□□□ -0.44
HERC4-214ENST00000513996 KTN1Q86UP2 1357 aaKnown RBP12.31□□□□□ -0.44
HERC4-214ENST00000513996 SUGP2Q8IX01 1082 aaKnown RBP eCLIP12.31□□□□□ -0.447e-7■□□□□ 9.9
HERC4-214ENST00000513996 CAMTA1Q9Y6Y1 1673 aa12.31□□□□□ -0.44
HERC4-214ENST00000513996 SPATA31A1Q5TZJ5 1347 aa12.31□□□□□ -0.44
HERC4-214ENST00000513996 LARP1Q6PKG0 1096 aaKnown RBP12.3□□□□□ -0.44
HERC4-214ENST00000513996 CCER1Q8TC90 406 aaPredicted RBP12.3□□□□□ -0.44
HERC4-214ENST00000513996 TTC21AQ8NDW8 1320 aa12.3□□□□□ -0.44
HERC4-214ENST00000513996 NRKQ7Z2Y5 1582 aa12.3□□□□□ -0.44
HERC4-214ENST00000513996 USP47Q96K76 1375 aa12.3□□□□□ -0.44
HERC4-214ENST00000513996 ZBTB7CA1YPR0 619 aa12.29□□□□□ -0.44
HERC4-214ENST00000513996 EVA1CP58658 441 aa12.29□□□□□ -0.44
HERC4-214ENST00000513996 SAMD1Q6SPF0 538 aaPredicted RBP12.29□□□□□ -0.44
HERC4-214ENST00000513996 KRT27Q7Z3Y8 459 aa12.29□□□□□ -0.44
HERC4-214ENST00000513996 ARHGEF25Q86VW2 580 aa12.29□□□□□ -0.44
HERC4-214ENST00000513996 NME9Q86XW9 330 aa12.29□□□□□ -0.44
HERC4-214ENST00000513996 AXIN2Q9Y2T1 843 aa12.29□□□□□ -0.44
HERC4-214ENST00000513996 PIK3C2AO00443 1686 aa12.29□□□□□ -0.44
HERC4-214ENST00000513996 AKAP12Q02952 1782 aa12.28□□□□□ -0.44
HERC4-214ENST00000513996 BRWD3Q6RI45 1802 aa12.28□□□□□ -0.44
HERC4-214ENST00000513996 SLIT3O75094 1523 aa12.28□□□□□ -0.44
HERC4-214ENST00000513996 SOX12O15370 315 aa12.28□□□□□ -0.44
HERC4-214ENST00000513996 FAM182BQ5T319 152 aa12.28□□□□□ -0.44
HERC4-214ENST00000513996 USP35Q9P2H5 1018 aa12.28□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms