RNA–Protein interactions for RNA: ENST00000513450.1

RNF4-219, Transcript of ring finger protein 4, human

TSL 5

Gene RNF4, Length 416 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RNF4-219	ENST00000513450	KCNH2	Q12809	1159 aa		4.61	□□□□□ -1.67
RNF4-219	ENST00000513450	ARMC2	Q8NEN0	867 aa		4.61	□□□□□ -1.67
RNF4-219	ENST00000513450	NKX2-3	Q8TAU0	364 aa		4.61	□□□□□ -1.67
RNF4-219	ENST00000513450	EPS8L1	Q8TE68	723 aa		4.61	□□□□□ -1.67
RNF4-219	ENST00000513450	ZNF330	Q9Y3S2	320 aa	Predicted RBP	4.61	□□□□□ -1.67
RNF4-219	ENST00000513450	ZC3H4	Q9UPT8	1303 aa	Known RBP	4.61	□□□□□ -1.67
RNF4-219	ENST00000513450	GPR37L1	O60883	481 aa		4.6	□□□□□ -1.67
RNF4-219	ENST00000513450	S1PR4	O95977	384 aa		4.6	□□□□□ -1.67
RNF4-219	ENST00000513450	CTH	P32929	405 aa		4.6	□□□□□ -1.67
RNF4-219	ENST00000513450	GGCX	P38435	758 aa		4.6	□□□□□ -1.67
RNF4-219	ENST00000513450	IRF5	Q13568	498 aa		4.6	□□□□□ -1.67
RNF4-219	ENST00000513450	GPKOW	Q92917	476 aa	Predicted RBP eCLIP	4.6	□□□□□ -1.67
RNF4-219	ENST00000513450	MAP10	Q9P2G4	905 aa		4.6	□□□□□ -1.67
RNF4-219	ENST00000513450	FKBPL	Q9UIM3	349 aa		4.6	□□□□□ -1.67
RNF4-219	ENST00000513450	NRG2	O14511	850 aa	Predicted RBP	4.59	□□□□□ -1.67
RNF4-219	ENST00000513450	NBPF14	Q5TI25	921 aa		4.58	□□□□□ -1.68
RNF4-219	ENST00000513450	CCDC24	Q8N4L8	307 aa		4.58	□□□□□ -1.68
RNF4-219	ENST00000513450	UNC93B1	Q9H1C4	597 aa		4.58	□□□□□ -1.68
RNF4-219	ENST00000513450	ZNF777	Q9ULD5	760 aa	Predicted RBP	4.58	□□□□□ -1.68
RNF4-219	ENST00000513450	FCF1	Q9Y324	198 aa	Known RBP	4.58	□□□□□ -1.68
RNF4-219	ENST00000513450	GPSM3	Q9Y4H4	160 aa		4.58	□□□□□ -1.68
RNF4-219	ENST00000513450	ARID3C	A6NKF2	412 aa		4.57	□□□□□ -1.68
RNF4-219	ENST00000513450	ZBBX	A8MT70	800 aa		4.57	□□□□□ -1.68
RNF4-219	ENST00000513450	SOX11	P35716	441 aa		4.57	□□□□□ -1.68
RNF4-219	ENST00000513450	PTK2	Q05397	1052 aa		4.57	□□□□□ -1.68
RNF4-219	ENST00000513450	PDXDC2P	Q6P474	469 aa		4.57	□□□□□ -1.68
RNF4-219	ENST00000513450	ANKLE1	Q8NAG6	615 aa		4.57	□□□□□ -1.68
RNF4-219	ENST00000513450	ZNF775	Q96BV0	537 aa	Predicted RBP	4.57	□□□□□ -1.68
RNF4-219	ENST00000513450	PRKD2	Q9BZL6	878 aa		4.57	□□□□□ -1.68
RNF4-219	ENST00000513450	RNF223	E7ERA6	249 aa		4.56	□□□□□ -1.68
RNF4-219	ENST00000513450	EIF4G2	P78344	907 aa	Known RBP eCLIP	4.56	□□□□□ -1.68
RNF4-219	ENST00000513450	VAC14	Q08AM6	782 aa		4.56	□□□□□ -1.68
RNF4-219	ENST00000513450	NR1H3	Q13133	447 aa		4.56	□□□□□ -1.68
RNF4-219	ENST00000513450	PTCRA	Q6ISU1	281 aa	Predicted RBP	4.56	□□□□□ -1.68
RNF4-219	ENST00000513450	PPP1R18	Q6NYC8	613 aa		4.56	□□□□□ -1.68
RNF4-219	ENST00000513450	ZNF592	Q92610	1267 aa		4.56	□□□□□ -1.68
RNF4-219	ENST00000513450	C1orf115	Q9H7X2	142 aa		4.56	□□□□□ -1.68
RNF4-219	ENST00000513450	EIF4ENIF1	Q9NRA8	985 aa	Known RBP	4.56	□□□□□ -1.68
RNF4-219	ENST00000513450	SERPINA10	Q9UK55	444 aa		4.56	□□□□□ -1.68
RNF4-219	ENST00000513450	POM121C	A8CG34	1229 aa		4.55	□□□□□ -1.68
RNF4-219	ENST00000513450	PPEF1	O14829	653 aa	Predicted RBP	4.55	□□□□□ -1.68
RNF4-219	ENST00000513450	ZBTB24	O43167	697 aa	Predicted RBP	4.55	□□□□□ -1.68
RNF4-219	ENST00000513450	MCCD1	P59942	119 aa	Predicted RBP	4.55	□□□□□ -1.68
RNF4-219	ENST00000513450	CALR3	Q96L12	384 aa	Known RBP	4.55	□□□□□ -1.68
RNF4-219	ENST00000513450	FBXO45	P0C2W1	286 aa		4.54	□□□□□ -1.68
RNF4-219	ENST00000513450	RPIA	P49247	311 aa		4.54	□□□□□ -1.68
RNF4-219	ENST00000513450	SH3BP5L	Q7L8J4	393 aa		4.54	□□□□□ -1.68
RNF4-219	ENST00000513450	BPHL	Q86WA6	291 aa	Predicted RBP	4.54	□□□□□ -1.68
RNF4-219	ENST00000513450	ZNF511	Q8NB15	262 aa		4.54	□□□□□ -1.68
RNF4-219	ENST00000513450	BAP1	Q92560	729 aa		4.54	□□□□□ -1.68
RNF4-219	ENST00000513450	GLMN	Q92990	594 aa		4.54	□□□□□ -1.68
RNF4-219	ENST00000513450	ARHGAP9	Q9BRR9	750 aa		4.54	□□□□□ -1.68
RNF4-219	ENST00000513450	ALG2	Q9H553	416 aa		4.54	□□□□□ -1.68
RNF4-219	ENST00000513450	SEMA3F	Q13275	785 aa		4.53	□□□□□ -1.68
RNF4-219	ENST00000513450	HDGFL1	Q5TGJ6	251 aa		4.53	□□□□□ -1.68
RNF4-219	ENST00000513450	SH3RF1	Q7Z6J0	888 aa		4.53	□□□□□ -1.68
RNF4-219	ENST00000513450	CCDC82	Q8N4S0	544 aa		4.53	□□□□□ -1.68
RNF4-219	ENST00000513450	CCDC97	Q96F63	343 aa	Predicted RBP	4.53	□□□□□ -1.68
RNF4-219	ENST00000513450	CD2BP2	O95400	341 aa	Known RBP	4.52	□□□□□ -1.69
RNF4-219	ENST00000513450	WNT7B	P56706	349 aa		4.52	□□□□□ -1.69
RNF4-219	ENST00000513450	TRIM32	Q13049	653 aa		4.52	□□□□□ -1.69
RNF4-219	ENST00000513450	PLA2G2C	Q5R387	149 aa		4.52	□□□□□ -1.69
RNF4-219	ENST00000513450	ZBTB33	Q86T24	672 aa		4.52	□□□□□ -1.69
RNF4-219	ENST00000513450	ADAMTS19	Q8TE59	1207 aa		4.52	□□□□□ -1.69
RNF4-219	ENST00000513450	OCSTAMP	Q9BR26	566 aa		4.52	□□□□□ -1.69
RNF4-219	ENST00000513450	PDZRN3	Q9UPQ7	1066 aa		4.52	□□□□□ -1.69
RNF4-219	ENST00000513450	SH3BP2	P78314	561 aa		4.51	□□□□□ -1.69
RNF4-219	ENST00000513450	AGER	Q15109	404 aa		4.51	□□□□□ -1.69
RNF4-219	ENST00000513450	LINC01559	Q495D7	138 aa		4.51	□□□□□ -1.69
RNF4-219	ENST00000513450	ADAM32	Q8TC27	787 aa		4.51	□□□□□ -1.69
RNF4-219	ENST00000513450	MAGEB6P1	A0A0J9YX57	407 aa		4.5	□□□□□ -1.69
RNF4-219	ENST00000513450	VARS	P26640	1264 aa	Known RBP	4.5	□□□□□ -1.69
RNF4-219	ENST00000513450	DZIP3	Q86Y13	1208 aa	Known RBP	4.5	□□□□□ -1.69
RNF4-219	ENST00000513450	TRMT44	Q8IYL2	757 aa	Known RBP	4.5	□□□□□ -1.69
RNF4-219	ENST00000513450	FOXJ1	Q92949	421 aa		4.5	□□□□□ -1.69
RNF4-219	ENST00000513450	ARX	Q96QS3	562 aa		4.5	□□□□□ -1.69
RNF4-219	ENST00000513450	ARID3A	Q99856	593 aa		4.5	□□□□□ -1.69
RNF4-219	ENST00000513450	CDV3	Q9UKY7	258 aa	Known RBP	4.5	□□□□□ -1.69
RNF4-219	ENST00000513450	SLC19A1	P41440	591 aa		4.49	□□□□□ -1.69
RNF4-219	ENST00000513450	ERFE	Q4G0M1	354 aa		4.49	□□□□□ -1.69
RNF4-219	ENST00000513450	C4orf48	Q5BLP8	95 aa		4.49	□□□□□ -1.69
RNF4-219	ENST00000513450	LIAT1	Q6ZQX7	453 aa		4.49	□□□□□ -1.69
RNF4-219	ENST00000513450	NFATC2IP	Q8NCF5	419 aa		4.49	□□□□□ -1.69
RNF4-219	ENST00000513450	C1QTNF2	Q9BXJ5	285 aa		4.49	□□□□□ -1.69
RNF4-219	ENST00000513450	CARD14	Q9BXL6	1004 aa		4.49	□□□□□ -1.69
RNF4-219	ENST00000513450	PPP1R12C	Q9BZL4	782 aa		4.49	□□□□□ -1.69
RNF4-219	ENST00000513450	CEP126	Q9P2H0	1117 aa		4.49	□□□□□ -1.69
RNF4-219	ENST00000513450	PCDHB9	Q9Y5E1	797 aa		4.49	□□□□□ -1.69
RNF4-219	ENST00000513450		V9GY48	417 aa	Predicted RBP	4.49	□□□□□ -1.69
RNF4-219	ENST00000513450	SKOR1	P84550	965 aa		4.48	□□□□□ -1.69
RNF4-219	ENST00000513450	NBPF20	Q3BBV1	942 aa		4.48	□□□□□ -1.69
RNF4-219	ENST00000513450	SLFNL1	Q499Z3	407 aa		4.48	□□□□□ -1.69
RNF4-219	ENST00000513450	CCDC125	Q86Z20	511 aa		4.48	□□□□□ -1.69
RNF4-219	ENST00000513450	FAM174A	Q8TBP5	190 aa		4.48	□□□□□ -1.69
RNF4-219	ENST00000513450	SLC10A4	Q96EP9	437 aa		4.48	□□□□□ -1.69
RNF4-219	ENST00000513450	UCN2	Q96RP3	112 aa		4.48	□□□□□ -1.69
RNF4-219	ENST00000513450	MAP4K5	Q9Y4K4	846 aa		4.48	□□□□□ -1.69
RNF4-219	ENST00000513450	PALM3	A6NDB9	673 aa	Predicted RBP	4.47	□□□□□ -1.69
RNF4-219	ENST00000513450	ATP9B	O43861	1147 aa		4.47	□□□□□ -1.69
RNF4-219	ENST00000513450	PPP1R15A	O75807	674 aa	Predicted RBP	4.47	□□□□□ -1.69

Retrieved 100 of 20,778 RNA–protein pairs in 59.3 ms