RNA–Protein interactions for RNA: ENST00000511263.1

HMGB3P13-201, Transcript of high mobility group box 3 pseudogene 13, humanhuman

BASIC

Gene HMGB3P13, Length 607 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P13-201ENST00000511263 MOXD2PA6NHM9 499 aa8.89□□□□□ -0.99
HMGB3P13-201ENST00000511263 SPTLC1O15269 473 aa8.89□□□□□ -0.99
HMGB3P13-201ENST00000511263 PRPF38BQ5VTL8 546 aaKnown RBP8.89□□□□□ -0.99
HMGB3P13-201ENST00000511263 MYSM1Q5VVJ2 828 aa8.89□□□□□ -0.99
HMGB3P13-201ENST00000511263 RSBN1LQ6PCB5 846 aaPredicted RBP8.89□□□□□ -0.99
HMGB3P13-201ENST00000511263 C6orf229H3BNL8 230 aa8.88□□□□□ -0.99
HMGB3P13-201ENST00000511263 TRIM46Q7Z4K8 759 aa8.88□□□□□ -0.99
HMGB3P13-201ENST00000511263 EHBP1Q8NDI1 1231 aa8.88□□□□□ -0.99
HMGB3P13-201ENST00000511263 KIFC2Q96AC6 838 aa8.88□□□□□ -0.99
HMGB3P13-201ENST00000511263 ZBTB3Q9H5J0 574 aa8.88□□□□□ -0.99
HMGB3P13-201ENST00000511263 SH3BP2P78314 561 aa8.87□□□□□ -0.99
HMGB3P13-201ENST00000511263 INSM1Q01101 510 aaPredicted RBP8.87□□□□□ -0.99
HMGB3P13-201ENST00000511263 MTMR2Q13614 643 aa8.87□□□□□ -0.99
HMGB3P13-201ENST00000511263 NUTM2BA6NNL0 878 aaPredicted RBP8.86□□□□□ -0.99
HMGB3P13-201ENST00000511263 NUTM2EB1AL46 878 aaPredicted RBP8.86□□□□□ -0.99
HMGB3P13-201ENST00000511263 NUTM2DQ5VT03 806 aaPredicted RBP8.86□□□□□ -0.99
HMGB3P13-201ENST00000511263 NUTM2AQ8IVF1 878 aaPredicted RBP8.86□□□□□ -0.99
HMGB3P13-201ENST00000511263 NDUFV2P19404 249 aa8.85□□□□□ -0.99
HMGB3P13-201ENST00000511263 PLEKHG3A1L390 1219 aa8.84□□□□□ -0.99
HMGB3P13-201ENST00000511263 CCNYL3P0C7X3 344 aa8.84□□□□□ -0.99
HMGB3P13-201ENST00000511263 LINC01559Q495D7 138 aa8.84□□□□□ -0.99
HMGB3P13-201ENST00000511263 POLR3EQ9NVU0 708 aa8.84□□□□□ -0.99
HMGB3P13-201ENST00000511263 WASF2Q9Y6W5 498 aa8.84□□□□□ -0.99
HMGB3P13-201ENST00000511263 CAPN5O15484 640 aaPredicted RBP8.83□□□□□ -1
HMGB3P13-201ENST00000511263 VEGFBP49765 207 aa8.83□□□□□ -1
HMGB3P13-201ENST00000511263 TLL2Q9Y6L7 1015 aa8.83□□□□□ -1
HMGB3P13-201ENST00000511263 TMEM132AQ24JP5 1023 aa8.82□□□□□ -1
HMGB3P13-201ENST00000511263 HELBQ8NG08 1087 aaPredicted RBP8.82□□□□□ -1
HMGB3P13-201ENST00000511263 UNC93B1Q9H1C4 597 aa8.82□□□□□ -1
HMGB3P13-201ENST00000511263 GMPRP36959 345 aa8.81□□□□□ -1
HMGB3P13-201ENST00000511263 PTPRNQ16849 979 aa8.81□□□□□ -1
HMGB3P13-201ENST00000511263 CSPP1Q1MSJ5 1256 aa8.81□□□□□ -1
HMGB3P13-201ENST00000511263 BAP1Q92560 729 aa8.81□□□□□ -1
HMGB3P13-201ENST00000511263 EVA1BQ9NVM1 165 aa8.81□□□□□ -1
HMGB3P13-201ENST00000511263 NXF1Q9UBU9 619 aaKnown RBP8.81□□□□□ -1
HMGB3P13-201ENST00000511263 DESI1Q6ICB0 168 aa8.8□□□□□ -1
HMGB3P13-201ENST00000511263 PRR7Q8TB68 274 aa8.8□□□□□ -1
HMGB3P13-201ENST00000511263 HRCP23327 699 aa8.79□□□□□ -1
HMGB3P13-201ENST00000511263 LORP23490 312 aaPredicted RBP8.79□□□□□ -1
HMGB3P13-201ENST00000511263 LIMD1Q9UGP4 676 aa8.79□□□□□ -1
HMGB3P13-201ENST00000511263 LILRB3O75022 631 aa8.78□□□□□ -1
HMGB3P13-201ENST00000511263 KCNH2Q12809 1159 aa8.78□□□□□ -1
HMGB3P13-201ENST00000511263 SLC16A10Q8TF71 515 aa8.78□□□□□ -1
HMGB3P13-201ENST00000511263 ZFP42Q96MM3 310 aa8.78□□□□□ -1
HMGB3P13-201ENST00000511263 ZNF511Q8NB15 262 aa8.77□□□□□ -1.01
HMGB3P13-201ENST00000511263 GNL3Q9BVP2 549 aaKnown RBP eCLIP8.77□□□□□ -1.01
HMGB3P13-201ENST00000511263 PCDHB15Q9Y5E8 787 aa8.77□□□□□ -1.01
HMGB3P13-201ENST00000511263 ERBB4Q15303 1308 aa8.77□□□□□ -1.01
HMGB3P13-201ENST00000511263 TMEM259Q4ZIN3 620 aa8.76□□□□□ -1.01
HMGB3P13-201ENST00000511263 PPP2R2DQ66LE6 453 aa8.76□□□□□ -1.01
HMGB3P13-201ENST00000511263 APBB1O00213 710 aa8.75□□□□□ -1.01
HMGB3P13-201ENST00000511263 NNTQ13423 1086 aa8.75□□□□□ -1.01
HMGB3P13-201ENST00000511263 TSC1Q92574 1164 aa8.75□□□□□ -1.01
HMGB3P13-201ENST00000511263 SOBPA7XYQ1 873 aa8.74□□□□□ -1.01
HMGB3P13-201ENST00000511263 H3BM21 787 aa8.74□□□□□ -1.01
HMGB3P13-201ENST00000511263 PNMA1Q8ND90 353 aa8.74□□□□□ -1.01
HMGB3P13-201ENST00000511263 TIMP2P16035 220 aa8.73□□□□□ -1.01
HMGB3P13-201ENST00000511263 QPCTQ16769 361 aa8.73□□□□□ -1.01
HMGB3P13-201ENST00000511263 PROCA1Q8NCQ7 364 aaPredicted RBP8.73□□□□□ -1.01
HMGB3P13-201ENST00000511263 CABLES1Q8TDN4 633 aa8.73□□□□□ -1.01
HMGB3P13-201ENST00000511263 IRF7Q92985 503 aa8.73□□□□□ -1.01
HMGB3P13-201ENST00000511263 CFAP99D6REC4 459 aa8.72□□□□□ -1.01
HMGB3P13-201ENST00000511263 VARSP26640 1264 aaKnown RBP8.72□□□□□ -1.01
HMGB3P13-201ENST00000511263 NPAS3Q8IXF0 933 aa8.72□□□□□ -1.01
HMGB3P13-201ENST00000511263 CTHP32929 405 aa8.71□□□□□ -1.02
HMGB3P13-201ENST00000511263 WDR4P57081 412 aaKnown RBP8.71□□□□□ -1.02
HMGB3P13-201ENST00000511263 MRPL14Q6P1L8 145 aaKnown RBP8.71□□□□□ -1.02
HMGB3P13-201ENST00000511263 ZSCAN1Q8NBB4 408 aa8.71□□□□□ -1.02
HMGB3P13-201ENST00000511263 FOXJ1Q92949 421 aa8.71□□□□□ -1.02
HMGB3P13-201ENST00000511263 PURBQ96QR8 312 aaKnown RBP8.71□□□□□ -1.02
HMGB3P13-201ENST00000511263 KLF16Q9BXK1 252 aaPredicted RBP8.71□□□□□ -1.02
HMGB3P13-201ENST00000511263 RFC5P40937 340 aa8.7□□□□□ -1.02
HMGB3P13-201ENST00000511263 LYPD8Q6UX82 237 aa8.7□□□□□ -1.02
HMGB3P13-201ENST00000511263 MPNDQ8N594 471 aa8.7□□□□□ -1.02
HMGB3P13-201ENST00000511263 BANK1Q8NDB2 785 aa8.7□□□□□ -1.02
HMGB3P13-201ENST00000511263 PRM3Q9NNZ6 103 aa8.7□□□□□ -1.02
HMGB3P13-201ENST00000511263 MAP10Q9P2G4 905 aa8.7□□□□□ -1.02
HMGB3P13-201ENST00000511263 RTL5Q5HYW3 569 aaPredicted RBP8.69□□□□□ -1.02
HMGB3P13-201ENST00000511263 ARMC2Q8NEN0 867 aa8.69□□□□□ -1.02
HMGB3P13-201ENST00000511263 AP1G2O75843 785 aa8.68□□□□□ -1.02
HMGB3P13-201ENST00000511263 ADH1CP00326 375 aa8.68□□□□□ -1.02
HMGB3P13-201ENST00000511263 ZFAND3Q9H8U3 227 aa8.68□□□□□ -1.02
HMGB3P13-201ENST00000511263 F12P00748 615 aaPredicted RBP8.67□□□□□ -1.02
HMGB3P13-201ENST00000511263 ARID5BQ14865 1188 aa8.67□□□□□ -1.02
HMGB3P13-201ENST00000511263 C4orf48Q5BLP8 95 aa8.67□□□□□ -1.02
HMGB3P13-201ENST00000511263 FAM174AQ8TBP5 190 aa8.67□□□□□ -1.02
HMGB3P13-201ENST00000511263 NR3C2P08235 984 aa8.66□□□□□ -1.02
HMGB3P13-201ENST00000511263 SCARF1Q14162 830 aa8.66□□□□□ -1.02
HMGB3P13-201ENST00000511263 ITPKCQ96DU7 683 aa8.66□□□□□ -1.02
HMGB3P13-201ENST00000511263 CDK15Q96Q40 435 aa8.66□□□□□ -1.02
HMGB3P13-201ENST00000511263 FAM181BA6NEQ2 426 aa8.65□□□□□ -1.02
HMGB3P13-201ENST00000511263 PER1O15534 1290 aaPredicted RBP8.65□□□□□ -1.02
HMGB3P13-201ENST00000511263 SOCS7O14512 581 aa8.64□□□□□ -1.03
HMGB3P13-201ENST00000511263 ZIC2O95409 532 aaPredicted RBP8.64□□□□□ -1.03
HMGB3P13-201ENST00000511263 USP17L8P0C7I0 530 aa8.63□□□□□ -1.03
HMGB3P13-201ENST00000511263 GRM5P41594 1212 aa8.63□□□□□ -1.03
HMGB3P13-201ENST00000511263 C6orf118Q5T5N4 469 aa8.63□□□□□ -1.03
HMGB3P13-201ENST00000511263 GPKOWQ92917 476 aaPredicted RBP eCLIP8.63□□□□□ -1.03
HMGB3P13-201ENST00000511263 CTDSPL2Q05D32 466 aa8.62□□□□□ -1.03
HMGB3P13-201ENST00000511263 FLIIQ13045 1269 aa8.62□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms