RNA–Protein interactions for RNA: ENST00000510558.6

SNF8-209, Transcript of SNF8, ESCRT-II complex subunit, human

TSL 5

Gene SNF8, Length 1,051 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SNF8-209	ENST00000510558	POLR3A	O14802	1390 aa	Predicted RBP	32.94	■■■□□ 2.86
SNF8-209	ENST00000510558	SRPK2	P78362	688 aa	Known RBP	32.92	■■■□□ 2.86
SNF8-209	ENST00000510558	GJD4	Q96KN9	370 aa	Predicted RBP	32.92	■■■□□ 2.86
SNF8-209	ENST00000510558	ACE	P12821	1306 aa		32.91	■■■□□ 2.86
SNF8-209	ENST00000510558	PLEKHG3	A1L390	1219 aa		32.9	■■■□□ 2.86
SNF8-209	ENST00000510558	GLI3	P10071	1580 aa		32.89	■■■□□ 2.86
SNF8-209	ENST00000510558	NBPF8	Q3BBV2	869 aa		32.89	■■■□□ 2.86
SNF8-209	ENST00000510558	CABP2	Q9NPB3	220 aa		32.88	■■■□□ 2.85
SNF8-209	ENST00000510558	RALGAPB	Q86X10	1494 aa		32.87	■■■□□ 2.85
SNF8-209	ENST00000510558	PPIP5K1	Q6PFW1	1433 aa		32.86	■■■□□ 2.85
SNF8-209	ENST00000510558	FAM83G	A6ND36	823 aa		32.86	■■■□□ 2.85
SNF8-209	ENST00000510558	TONSL	Q96HA7	1378 aa		32.85	■■■□□ 2.85
SNF8-209	ENST00000510558	COL14A1	Q05707	1796 aa	Known RBP	32.85	■■■□□ 2.85
SNF8-209	ENST00000510558	NRAP	Q86VF7	1730 aa		32.84	■■■□□ 2.85
SNF8-209	ENST00000510558	PHRF1	Q9P1Y6	1649 aa	Known RBP	32.84	■■■□□ 2.85
SNF8-209	ENST00000510558	ATAD2	Q6PL18	1390 aa		32.83	■■■□□ 2.85
SNF8-209	ENST00000510558	VPS72	Q15906	364 aa		32.81	■■■□□ 2.84
SNF8-209	ENST00000510558	EVC2	Q86UK5	1308 aa		32.8	■■■□□ 2.84
SNF8-209	ENST00000510558	NUTM2G	Q5VZR2	741 aa		32.76	■■■□□ 2.83
SNF8-209	ENST00000510558	BTG4	Q9NY30	223 aa		32.76	■■■□□ 2.83
SNF8-209	ENST00000510558	CCDC9	Q9Y3X0	531 aa	Known RBP	32.76	■■■□□ 2.83
SNF8-209	ENST00000510558	BRWD3	Q6RI45	1802 aa		32.74	■■■□□ 2.83
SNF8-209	ENST00000510558	PRDM11	Q9NQV5	511 aa		32.74	■■■□□ 2.83
SNF8-209	ENST00000510558	CABP1	Q9NZU7	370 aa		32.74	■■■□□ 2.83
SNF8-209	ENST00000510558	CARD11	Q9BXL7	1154 aa		32.73	■■■□□ 2.83
SNF8-209	ENST00000510558	ABTB2	Q8N961	1025 aa		32.72	■■■□□ 2.83
SNF8-209	ENST00000510558	BRD4	O60885	1362 aa	Predicted RBP	32.71	■■■□□ 2.83
SNF8-209	ENST00000510558	KIAA0232	Q92628	1395 aa		32.71	■■■□□ 2.83
SNF8-209	ENST00000510558	NRK	Q7Z2Y5	1582 aa		32.71	■■■□□ 2.83
SNF8-209	ENST00000510558	USP6	P35125	1406 aa		32.7	■■■□□ 2.83
SNF8-209	ENST00000510558	SBNO2	Q9Y2G9	1366 aa		32.69	■■■□□ 2.82
SNF8-209	ENST00000510558	SEPT12	Q8IYM1	358 aa		32.67	■■■□□ 2.82
SNF8-209	ENST00000510558	USP19	O94966	1318 aa		32.67	■■■□□ 2.82
SNF8-209	ENST00000510558	AKAP12	Q02952	1782 aa		32.66	■■■□□ 2.82
SNF8-209	ENST00000510558	ZC3H6	P61129	1189 aa	Known RBP	32.66	■■■□□ 2.82
SNF8-209	ENST00000510558	ONECUT3	O60422	494 aa	Predicted RBP	32.65	■■■□□ 2.82
SNF8-209	ENST00000510558	CHRNA2	Q15822	529 aa		32.65	■■■□□ 2.82
SNF8-209	ENST00000510558	NLRP13	Q86W25	1043 aa		32.64	■■■□□ 2.82
SNF8-209	ENST00000510558	SSH2	Q76I76	1423 aa		32.62	■■■□□ 2.81
SNF8-209	ENST00000510558	PIK3C2A	O00443	1686 aa		32.61	■■■□□ 2.81
SNF8-209	ENST00000510558	SPATA31A5	Q5VU36	1347 aa		32.6	■■■□□ 2.81
SNF8-209	ENST00000510558	SPATA31A7	Q8IWB4	1347 aa		32.6	■■■□□ 2.81
SNF8-209	ENST00000510558	EP400	Q96L91	3159 aa		32.6	■■■□□ 2.81
SNF8-209	ENST00000510558	CPD	O75976	1380 aa		32.59	■■■□□ 2.81
SNF8-209	ENST00000510558	FAM98C	Q17RN3	349 aa	Known RBP	32.59	■■■□□ 2.81
SNF8-209	ENST00000510558	LMO7	Q8WWI1	1683 aa		32.58	■■■□□ 2.81
SNF8-209	ENST00000510558		A0A0G2JS52	829 aa		32.57	■■■□□ 2.8
SNF8-209	ENST00000510558	GC	P02774	474 aa		32.57	■■■□□ 2.8
SNF8-209	ENST00000510558	MYT1	Q01538	1121 aa		32.57	■■■□□ 2.8
SNF8-209	ENST00000510558	ZNF692	Q9BU19	519 aa	Predicted RBP	32.57	■■■□□ 2.8
SNF8-209	ENST00000510558	NLRP6	P59044	892 aa		32.56	■■■□□ 2.8
SNF8-209	ENST00000510558	SLIT3	O75094	1523 aa		32.56	■■■□□ 2.8
SNF8-209	ENST00000510558	CPSF1	Q10570	1443 aa	Known RBP	32.55	■■■□□ 2.8
SNF8-209	ENST00000510558	KRT27	Q7Z3Y8	459 aa		32.55	■■■□□ 2.8
SNF8-209	ENST00000510558	CCDC125	Q86Z20	511 aa		32.55	■■■□□ 2.8
SNF8-209	ENST00000510558	STRN4	Q9NRL3	753 aa		32.55	■■■□□ 2.8
SNF8-209	ENST00000510558	MON2	Q7Z3U7	1717 aa		32.54	■■■□□ 2.8
SNF8-209	ENST00000510558	CAMTA1	Q9Y6Y1	1673 aa		32.54	■■■□□ 2.8
SNF8-209	ENST00000510558	THSD7A	Q9UPZ6	1657 aa		32.53	■■■□□ 2.8
SNF8-209	ENST00000510558	TTC21B	Q7Z4L5	1316 aa		32.52	■■■□□ 2.8
SNF8-209	ENST00000510558	SPATA31A1	Q5TZJ5	1347 aa		32.51	■■■□□ 2.8
SNF8-209	ENST00000510558	KTN1	Q86UP2	1357 aa	Known RBP	32.5	■■■□□ 2.79
SNF8-209	ENST00000510558	BLM	P54132	1417 aa	Predicted RBP	32.5	■■■□□ 2.79
SNF8-209	ENST00000510558	EVA1C	P58658	441 aa		32.49	■■■□□ 2.79
SNF8-209	ENST00000510558	TTC21A	Q8NDW8	1320 aa		32.49	■■■□□ 2.79
SNF8-209	ENST00000510558	CD163L1	Q9NR16	1453 aa		32.45	■■■□□ 2.79
SNF8-209	ENST00000510558	ST20-MTHFS	A0A0A6YYL1	179 aa		32.44	■■■□□ 2.78
SNF8-209	ENST00000510558	TMC1	Q8TDI8	760 aa		32.44	■■■□□ 2.78
SNF8-209	ENST00000510558	PCGF6	Q9BYE7	350 aa		32.44	■■■□□ 2.78
SNF8-209	ENST00000510558	COL5A2	P05997	1499 aa	Predicted RBP	32.43	■■■□□ 2.78
SNF8-209	ENST00000510558	ZBTB7C	A1YPR0	619 aa		32.43	■■■□□ 2.78
SNF8-209	ENST00000510558	LARP1	Q6PKG0	1096 aa	Known RBP	32.43	■■■□□ 2.78
SNF8-209	ENST00000510558	TESK2	Q96S53	571 aa		32.43	■■■□□ 2.78
SNF8-209	ENST00000510558	COL18A1	P39060	1754 aa		32.42	■■■□□ 2.78
SNF8-209	ENST00000510558	PUS7	Q96PZ0	661 aa	Known RBP	32.42	■■■□□ 2.78
SNF8-209	ENST00000510558	USP35	Q9P2H5	1018 aa		32.42	■■■□□ 2.78
SNF8-209	ENST00000510558	AATK	Q6ZMQ8	1374 aa		32.42	■■■□□ 2.78
SNF8-209	ENST00000510558	SLC12A5	Q9H2X9	1139 aa		32.4	■■■□□ 2.78
SNF8-209	ENST00000510558	CLSPN	Q9HAW4	1339 aa		32.4	■■■□□ 2.78
SNF8-209	ENST00000510558	USP54	Q70EL1	1684 aa		32.38	■■■□□ 2.77
SNF8-209	ENST00000510558	SF3B2	Q13435	895 aa	Known RBP	32.38	■■■□□ 2.77
SNF8-209	ENST00000510558	BARGIN	Q6ZT62	677 aa		32.38	■■■□□ 2.77
SNF8-209	ENST00000510558	HDGFL2	Q7Z4V5	671 aa	Predicted RBP	32.38	■■■□□ 2.77
SNF8-209	ENST00000510558	KCNH5	Q8NCM2	988 aa		32.38	■■■□□ 2.77
SNF8-209	ENST00000510558	SUGP2	Q8IX01	1082 aa	Known RBP eCLIP	32.37	■■■□□ 2.77
SNF8-209	ENST00000510558	NFAT5	O94916	1531 aa		32.36	■■■□□ 2.77
SNF8-209	ENST00000510558	RGPD5	Q99666	1765 aa		32.35	■■■□□ 2.77
SNF8-209	ENST00000510558	USP47	Q96K76	1375 aa		32.35	■■■□□ 2.77
SNF8-209	ENST00000510558	SOX12	O15370	315 aa		32.35	■■■□□ 2.77
SNF8-209	ENST00000510558	SLC24A1	O60721	1099 aa		32.35	■■■□□ 2.77
SNF8-209	ENST00000510558	FAM182B	Q5T319	152 aa		32.35	■■■□□ 2.77
SNF8-209	ENST00000510558	TCP11L2	Q8N4U5	519 aa		32.35	■■■□□ 2.77
SNF8-209	ENST00000510558	DEFB132	Q7Z7B7	95 aa		32.34	■■■□□ 2.77
SNF8-209	ENST00000510558	ARHGEF25	Q86VW2	580 aa		32.34	■■■□□ 2.77
SNF8-209	ENST00000510558	TERF2IP	Q9NYB0	399 aa		32.34	■■■□□ 2.77
SNF8-209	ENST00000510558	TIMELESS	Q9UNS1	1208 aa		32.34	■■■□□ 2.77
SNF8-209	ENST00000510558	RGPD1	P0DJD0	1748 aa		32.34	■■■□□ 2.77
SNF8-209	ENST00000510558	CRB1	P82279	1406 aa		32.34	■■■□□ 2.77
SNF8-209	ENST00000510558	EDC4	Q6P2E9	1401 aa	Known RBP	32.34	■■■□□ 2.77
SNF8-209	ENST00000510558		A0A1W2PP64	1363 aa		32.33	■■■□□ 2.77

Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms