RNA–Protein interactions for RNA: ENST00000509490.5

PDGFRA-208, Transcript of platelet derived growth factor receptor alpha, humanhuman

TSL 1 (best)

Gene PDGFRA, Length 2,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFRA-208ENST00000509490 PIK3R4Q99570 1358 aa11.78□□□□□ -0.52
PDGFRA-208ENST00000509490 FRAT1Q92837 279 aaPredicted RBP11.77□□□□□ -0.52
PDGFRA-208ENST00000509490 PNNQ9H307 717 aaKnown RBP11.77□□□□□ -0.52
PDGFRA-208ENST00000509490 YTHDC2Q9H6S0 1430 aaKnown RBP11.77□□□□□ -0.52
PDGFRA-208ENST00000509490 SEC24BO95487 1268 aa11.77□□□□□ -0.53
PDGFRA-208ENST00000509490 SMC5Q8IY18 1101 aa11.77□□□□□ -0.53
PDGFRA-208ENST00000509490 TRIM35Q9UPQ4 493 aa11.77□□□□□ -0.53
PDGFRA-208ENST00000509490 SLC4A3P48751 1232 aa11.76□□□□□ -0.53
PDGFRA-208ENST00000509490 ALDH1L2Q3SY69 923 aa11.76□□□□□ -0.53
PDGFRA-208ENST00000509490 DZIP1LQ8IYY4 767 aaKnown RBP11.76□□□□□ -0.53
PDGFRA-208ENST00000509490 CFAP65Q6ZU64 1925 aaKnown RBP11.76□□□□□ -0.53
PDGFRA-208ENST00000509490 FAM135BQ49AJ0 1406 aa11.76□□□□□ -0.53
PDGFRA-208ENST00000509490 NCOA3Q9Y6Q9 1424 aa11.76□□□□□ -0.53
PDGFRA-208ENST00000509490 RIMBP3CA6NJZ7 1639 aa11.76□□□□□ -0.53
PDGFRA-208ENST00000509490 RIMBP3BA6NNM3 1639 aa11.76□□□□□ -0.53
PDGFRA-208ENST00000509490 RIMBP3Q9UFD9 1639 aa11.76□□□□□ -0.53
PDGFRA-208ENST00000509490 TMPOP42166 694 aaKnown RBP11.76□□□□□ -0.53
PDGFRA-208ENST00000509490 TMEM132EQ6IEE7 984 aa11.76□□□□□ -0.53
PDGFRA-208ENST00000509490 DDX19BQ9UMR2 479 aa11.76□□□□□ -0.53
PDGFRA-208ENST00000509490 FRAT2O75474 233 aaPredicted RBP11.75□□□□□ -0.53
PDGFRA-208ENST00000509490 UPF2Q9HAU5 1272 aaKnown RBP11.75□□□□□ -0.53
PDGFRA-208ENST00000509490 KNDC1Q76NI1 1749 aa11.75□□□□□ -0.53
PDGFRA-208ENST00000509490 NPM1P06748 294 aaKnown RBP eCLIP11.74□□□□□ -0.53
PDGFRA-208ENST00000509490 TERF2IPQ9NYB0 399 aa11.74□□□□□ -0.53
PDGFRA-208ENST00000509490 LRRC7Q96NW7 1537 aa11.74□□□□□ -0.53
PDGFRA-208ENST00000509490 KIF16BQ96L93 1317 aa11.74□□□□□ -0.53
PDGFRA-208ENST00000509490 SPATA31D1Q6ZQQ2 1576 aa11.74□□□□□ -0.53
PDGFRA-208ENST00000509490 IL27Q8NEV9 243 aa11.74□□□□□ -0.53
PDGFRA-208ENST00000509490 PTCH1Q13635 1447 aa11.74□□□□□ -0.53
PDGFRA-208ENST00000509490 RRP7AQ9Y3A4 280 aaKnown RBP11.73□□□□□ -0.53
PDGFRA-208ENST00000509490 YEATS2Q9ULM3 1422 aa11.73□□□□□ -0.53
PDGFRA-208ENST00000509490 U2AF1L5P0DN76 240 aaPredicted RBP11.73□□□□□ -0.53
PDGFRA-208ENST00000509490 U2AF1Q01081 240 aaKnown RBP eCLIP11.73□□□□□ -0.53
PDGFRA-208ENST00000509490 ATF7IPQ6VMQ6 1270 aa11.73□□□□□ -0.53
PDGFRA-208ENST00000509490 ARXQ96QS3 562 aa11.73□□□□□ -0.53
PDGFRA-208ENST00000509490 FYB1O15117 783 aa11.73□□□□□ -0.53
PDGFRA-208ENST00000509490 IDI1Q13907 227 aa11.73□□□□□ -0.53
PDGFRA-208ENST00000509490 EIF5BO60841 1220 aaKnown RBP11.72□□□□□ -0.53
PDGFRA-208ENST00000509490 GGT6Q6P531 493 aa11.72□□□□□ -0.53
PDGFRA-208ENST00000509490 ZBTB40Q9NUA8 1239 aa11.72□□□□□ -0.53
PDGFRA-208ENST00000509490 TNNQ9UQP3 1299 aa11.72□□□□□ -0.53
PDGFRA-208ENST00000509490 CDK12Q9NYV4 1490 aaPredicted RBP11.72□□□□□ -0.53
PDGFRA-208ENST00000509490 MON2Q7Z3U7 1717 aa11.72□□□□□ -0.53
PDGFRA-208ENST00000509490 PLEKHG5O94827 1062 aa11.72□□□□□ -0.53
PDGFRA-208ENST00000509490 FCHSD2O94868 740 aa11.72□□□□□ -0.53
PDGFRA-208ENST00000509490 TRIM27P14373 513 aa11.72□□□□□ -0.53
PDGFRA-208ENST00000509490 ARHGAP45Q92619 1136 aa11.72□□□□□ -0.53
PDGFRA-208ENST00000509490 KIF24Q5T7B8 1368 aa11.72□□□□□ -0.53
PDGFRA-208ENST00000509490 TBC1D2Q9BYX2 928 aa11.71□□□□□ -0.53
PDGFRA-208ENST00000509490 AATKQ6ZMQ8 1374 aa11.71□□□□□ -0.53
PDGFRA-208ENST00000509490 CHGAP10645 457 aaKnown RBP11.71□□□□□ -0.54
PDGFRA-208ENST00000509490 CPSF1Q10570 1443 aaKnown RBP11.71□□□□□ -0.54
PDGFRA-208ENST00000509490 NRKQ7Z2Y5 1582 aa11.71□□□□□ -0.54
PDGFRA-208ENST00000509490 IPO8O15397 1037 aaKnown RBP11.7□□□□□ -0.54
PDGFRA-208ENST00000509490 SSH1Q8WYL5 1049 aa11.7□□□□□ -0.54
PDGFRA-208ENST00000509490 CABP2Q9NPB3 220 aa11.7□□□□□ -0.54
PDGFRA-208ENST00000509490 RBM25P49756 843 aaKnown RBP11.7□□□□□ -0.54
PDGFRA-208ENST00000509490 EXOSC9Q06265 439 aaKnown RBP11.7□□□□□ -0.54
PDGFRA-208ENST00000509490 CHMP4BQ9H444 224 aaKnown RBP11.7□□□□□ -0.54
PDGFRA-208ENST00000509490 DDIT3P35638 169 aa11.7□□□□□ -0.54
PDGFRA-208ENST00000509490 FAM43AQ8N2R8 423 aa11.7□□□□□ -0.54
PDGFRA-208ENST00000509490 SNX21Q969T3 373 aa11.7□□□□□ -0.54
PDGFRA-208ENST00000509490 NRXN3Q9Y4C0 1643 aa11.69□□□□□ -0.54
PDGFRA-208ENST00000509490 AKAP12Q02952 1782 aa11.69□□□□□ -0.54
PDGFRA-208ENST00000509490 FTSJ3Q8IY81 847 aaKnown RBP11.69□□□□□ -0.54
PDGFRA-208ENST00000509490 TECPR2O15040 1411 aa11.68□□□□□ -0.54
PDGFRA-208ENST00000509490 NUCB1Q02818 461 aa11.68□□□□□ -0.54
PDGFRA-208ENST00000509490 SMC4Q9NTJ3 1288 aa11.68□□□□□ -0.54
PDGFRA-208ENST00000509490 DIAPH1O60610 1272 aaKnown RBP11.68□□□□□ -0.54
PDGFRA-208ENST00000509490 NEUROD2Q15784 382 aa11.68□□□□□ -0.54
PDGFRA-208ENST00000509490 L1TD1Q5T7N2 865 aaKnown RBP11.68□□□□□ -0.54
PDGFRA-208ENST00000509490 SIRT1Q96EB6 747 aa11.68□□□□□ -0.54
PDGFRA-208ENST00000509490 EDC4Q6P2E9 1401 aaKnown RBP11.68□□□□□ -0.54
PDGFRA-208ENST00000509490 TNNT2P45379 298 aaPredicted RBP11.67□□□□□ -0.54
PDGFRA-208ENST00000509490 CALD1Q05682 793 aaKnown RBP11.67□□□□□ -0.54
PDGFRA-208ENST00000509490 A2ML1A8K2U0 1454 aa11.67□□□□□ -0.54
PDGFRA-208ENST00000509490 C3P01024 1663 aa11.67□□□□□ -0.54
PDGFRA-208ENST00000509490 FSD2A1L4K1 749 aa11.67□□□□□ -0.54
PDGFRA-208ENST00000509490 HDGFL2Q7Z4V5 671 aaPredicted RBP11.67□□□□□ -0.54
PDGFRA-208ENST00000509490 OSCARQ8IYS5 282 aa11.67□□□□□ -0.54
PDGFRA-208ENST00000509490 RSPH6AQ9H0K4 717 aa11.67□□□□□ -0.54
PDGFRA-208ENST00000509490 ISY1Q9ULR0 285 aaKnown RBP11.67□□□□□ -0.54
PDGFRA-208ENST00000509490 ZNF853P0CG23 659 aa11.67□□□□□ -0.54
PDGFRA-208ENST00000509490 C22orf23Q9BZE7 217 aa11.67□□□□□ -0.54
PDGFRA-208ENST00000509490 BRPF3Q9ULD4 1205 aa11.67□□□□□ -0.54
PDGFRA-208ENST00000509490 ZNF692Q9BU19 519 aaPredicted RBP11.66□□□□□ -0.54
PDGFRA-208ENST00000509490 CHMP5Q9NZZ3 219 aa11.66□□□□□ -0.54
PDGFRA-208ENST00000509490 CPS1P31327 1500 aa11.66□□□□□ -0.54
PDGFRA-208ENST00000509490 MAP2P11137 1827 aaKnown RBP11.66□□□□□ -0.54
PDGFRA-208ENST00000509490 BMP2KLQ5H9B9 411 aa11.65□□□□□ -0.54
PDGFRA-208ENST00000509490 TSR2Q969E8 191 aaKnown RBP11.65□□□□□ -0.54
PDGFRA-208ENST00000509490 CIZ1Q9ULV3 898 aaPredicted RBP11.65□□□□□ -0.54
PDGFRA-208ENST00000509490 NOB1Q9ULX3 412 aaKnown RBP11.65□□□□□ -0.54
PDGFRA-208ENST00000509490 BCL2L13Q9BXK5 485 aa11.65□□□□□ -0.54
PDGFRA-208ENST00000509490 ABCC4O15439 1325 aa11.65□□□□□ -0.55
PDGFRA-208ENST00000509490 RIPK4P57078 832 aa11.64□□□□□ -0.55
PDGFRA-208ENST00000509490 TMEM57Q8N5G2 664 aa11.64□□□□□ -0.55
PDGFRA-208ENST00000509490 GCC1Q96CN9 775 aa11.64□□□□□ -0.55
PDGFRA-208ENST00000509490 PRAM1Q96QH2 718 aa11.64□□□□□ -0.55
PDGFRA-208ENST00000509490 IFT57Q9NWB7 429 aa11.64□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 56.1 ms