RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 FAM174AQ8TBP5 190 aa7.9□□□□□ -1.14
NUP54-208ENST00000508604 ZBTB3Q9H5J0 574 aa7.9□□□□□ -1.14
NUP54-208ENST00000508604 TLL2Q9Y6L7 1015 aa7.9□□□□□ -1.14
NUP54-208ENST00000508604 FAM181BA6NEQ2 426 aa7.89□□□□□ -1.15
NUP54-208ENST00000508604 NNTQ13423 1086 aa7.89□□□□□ -1.15
NUP54-208ENST00000508604 SCARF1Q14162 830 aa7.89□□□□□ -1.15
NUP54-208ENST00000508604 RSBN1LQ6PCB5 846 aaPredicted RBP7.89□□□□□ -1.15
NUP54-208ENST00000508604 NPAS3Q8IXF0 933 aa7.89□□□□□ -1.15
NUP54-208ENST00000508604 LYPD8Q6UX82 237 aa7.89□□□□□ -1.15
NUP54-208ENST00000508604 TRIM46Q7Z4K8 759 aa7.89□□□□□ -1.15
NUP54-208ENST00000508604 IRF7Q92985 503 aa7.89□□□□□ -1.15
NUP54-208ENST00000508604 AGERQ15109 404 aa7.87□□□□□ -1.15
NUP54-208ENST00000508604 SPTLC1O15269 473 aa7.86□□□□□ -1.15
NUP54-208ENST00000508604 ADH1CP00326 375 aa7.86□□□□□ -1.15
NUP54-208ENST00000508604 WDR4P57081 412 aaKnown RBP7.86□□□□□ -1.15
NUP54-208ENST00000508604 PRPF38BQ5VTL8 546 aaKnown RBP7.86□□□□□ -1.15
NUP54-208ENST00000508604 AK7Q96M32 723 aa7.86□□□□□ -1.15
NUP54-208ENST00000508604 ZFP42Q96MM3 310 aa7.86□□□□□ -1.15
NUP54-208ENST00000508604 HRCP23327 699 aa7.86□□□□□ -1.15
NUP54-208ENST00000508604 ARID5BQ14865 1188 aa7.86□□□□□ -1.15
NUP54-208ENST00000508604 RIC3Q7Z5B4 369 aa7.86□□□□□ -1.15
NUP54-208ENST00000508604 PARP9Q8IXQ6 854 aa7.86□□□□□ -1.15
NUP54-208ENST00000508604 TRIM66O15016 1216 aa7.85□□□□□ -1.15
NUP54-208ENST00000508604 MRPL14Q6P1L8 145 aaKnown RBP7.85□□□□□ -1.15
NUP54-208ENST00000508604 TSC1Q92574 1164 aa7.85□□□□□ -1.15
NUP54-208ENST00000508604 PCDHB15Q9Y5E8 787 aa7.85□□□□□ -1.15
NUP54-208ENST00000508604 NUTM2BA6NNL0 878 aaPredicted RBP7.84□□□□□ -1.15
NUP54-208ENST00000508604 NUTM2EB1AL46 878 aaPredicted RBP7.84□□□□□ -1.15
NUP54-208ENST00000508604 CFAP99D6REC4 459 aa7.84□□□□□ -1.15
NUP54-208ENST00000508604 NUTM2DQ5VT03 806 aaPredicted RBP7.84□□□□□ -1.15
NUP54-208ENST00000508604 NUTM2AQ8IVF1 878 aaPredicted RBP7.84□□□□□ -1.15
NUP54-208ENST00000508604 CSPP1Q1MSJ5 1256 aa7.83□□□□□ -1.16
NUP54-208ENST00000508604 BPHLQ86WA6 291 aaPredicted RBP7.83□□□□□ -1.16
NUP54-208ENST00000508604 ARMC2Q8NEN0 867 aa7.83□□□□□ -1.16
NUP54-208ENST00000508604 TIMP2P16035 220 aa7.83□□□□□ -1.16
NUP54-208ENST00000508604 MAP10Q9P2G4 905 aa7.83□□□□□ -1.16
NUP54-208ENST00000508604 NR5A1Q13285 461 aa7.82□□□□□ -1.16
NUP54-208ENST00000508604 LCE2CQ5TA81 110 aa7.82□□□□□ -1.16
NUP54-208ENST00000508604 FOXJ1Q92949 421 aa7.82□□□□□ -1.16
NUP54-208ENST00000508604 CDK15Q96Q40 435 aa7.82□□□□□ -1.16
NUP54-208ENST00000508604 PURBQ96QR8 312 aaKnown RBP7.82□□□□□ -1.16
NUP54-208ENST00000508604 H3BM21 787 aa7.81□□□□□ -1.16
NUP54-208ENST00000508604 UPP2O95045 317 aa7.81□□□□□ -1.16
NUP54-208ENST00000508604 F12P00748 615 aaPredicted RBP7.81□□□□□ -1.16
NUP54-208ENST00000508604 GMPRP36959 345 aa7.81□□□□□ -1.16
NUP54-208ENST00000508604 VEGFBP49765 207 aa7.81□□□□□ -1.16
NUP54-208ENST00000508604 CABLES1Q8TDN4 633 aa7.81□□□□□ -1.16
NUP54-208ENST00000508604 ZSCAN1Q8NBB4 408 aa7.8□□□□□ -1.16
NUP54-208ENST00000508604 HELBQ8NG08 1087 aaPredicted RBP7.8□□□□□ -1.16
NUP54-208ENST00000508604 ZIC2O95409 532 aaPredicted RBP7.79□□□□□ -1.16
NUP54-208ENST00000508604 NBPF14Q5TI25 921 aa7.79□□□□□ -1.16
NUP54-208ENST00000508604 MAN1A2O60476 641 aa7.78□□□□□ -1.16
NUP54-208ENST00000508604 TUSC1Q2TAM9 212 aa7.78□□□□□ -1.16
NUP54-208ENST00000508604 PDE4DQ08499 809 aa7.77□□□□□ -1.17
NUP54-208ENST00000508604 MYSM1Q5VVJ2 828 aa7.77□□□□□ -1.17
NUP54-208ENST00000508604 PER1O15534 1290 aaPredicted RBP7.76□□□□□ -1.17
NUP54-208ENST00000508604 C6orf118Q5T5N4 469 aa7.76□□□□□ -1.17
NUP54-208ENST00000508604 ITPKCQ96DU7 683 aa7.76□□□□□ -1.17
NUP54-208ENST00000508604 KLF16Q9BXK1 252 aaPredicted RBP7.76□□□□□ -1.17
NUP54-208ENST00000508604 BMP2P12643 396 aa7.76□□□□□ -1.17
NUP54-208ENST00000508604 RSPH6AQ9H0K4 717 aa7.76□□□□□ -1.17
NUP54-208ENST00000508604 ZFAND3Q9H8U3 227 aa7.76□□□□□ -1.17
NUP54-208ENST00000508604 LIMD1Q9UGP4 676 aa7.76□□□□□ -1.17
NUP54-208ENST00000508604 LILRB3O75022 631 aa7.75□□□□□ -1.17
NUP54-208ENST00000508604 VASH1Q7L8A9 365 aaPredicted RBP7.75□□□□□ -1.17
NUP54-208ENST00000508604 QPCTQ16769 361 aa7.74□□□□□ -1.17
NUP54-208ENST00000508604 C4orf48Q5BLP8 95 aa7.74□□□□□ -1.17
NUP54-208ENST00000508604 ERBB4Q15303 1308 aa7.73□□□□□ -1.17
NUP54-208ENST00000508604 MAGEB6P1A0A0J9YX57 407 aa7.73□□□□□ -1.17
NUP54-208ENST00000508604 SOBPA7XYQ1 873 aa7.73□□□□□ -1.17
NUP54-208ENST00000508604 NR3C2P08235 984 aa7.73□□□□□ -1.17
NUP54-208ENST00000508604 GRM5P41594 1212 aa7.73□□□□□ -1.17
NUP54-208ENST00000508604 CLK2P49760 499 aaKnown RBP7.73□□□□□ -1.17
NUP54-208ENST00000508604 LINC00528Q8N1L1 170 aa7.73□□□□□ -1.17
NUP54-208ENST00000508604 GPKOWQ92917 476 aaPredicted RBP eCLIP7.73□□□□□ -1.171e-10■■■□□ 14.7
NUP54-208ENST00000508604 FSHRP23945 695 aa7.73□□□□□ -1.17
NUP54-208ENST00000508604 MAP4K5Q9Y4K4 846 aa7.73□□□□□ -1.17
NUP54-208ENST00000508604 EMILIN1Q9Y6C2 1016 aa7.73□□□□□ -1.17
NUP54-208ENST00000508604 SH3RF1Q7Z6J0 888 aa7.71□□□□□ -1.18
NUP54-208ENST00000508604 MEIOBQ8N635 442 aa7.71□□□□□ -1.18
NUP54-208ENST00000508604 TSEN34Q9BSV6 310 aaKnown RBP7.71□□□□□ -1.18
NUP54-208ENST00000508604 C1QTNF2Q9BXJ5 285 aa7.71□□□□□ -1.18
NUP54-208ENST00000508604 TRMT44Q8IYL2 757 aaKnown RBP7.7□□□□□ -1.18
NUP54-208ENST00000508604 CCDC116Q8IYX3 515 aa7.7□□□□□ -1.18
NUP54-208ENST00000508604 CARD14Q9BXL6 1004 aa7.7□□□□□ -1.18
NUP54-208ENST00000508604 SLC24A3Q9HC58 644 aa7.7□□□□□ -1.18
NUP54-208ENST00000508604 ATP1B4Q9UN42 357 aaPredicted RBP7.7□□□□□ -1.18
NUP54-208ENST00000508604 VSIG8P0DPA2 414 aa7.7□□□□□ -1.18
NUP54-208ENST00000508604 RTL5Q5HYW3 569 aaPredicted RBP7.7□□□□□ -1.18
NUP54-208ENST00000508604 SH3BP5LQ7L8J4 393 aa7.7□□□□□ -1.18
NUP54-208ENST00000508604 PGPEP1Q9NXJ5 209 aa7.7□□□□□ -1.18
NUP54-208ENST00000508604 POLR3EQ9NVU0 708 aa7.69□□□□□ -1.18
NUP54-208ENST00000508604 CDV3Q9UKY7 258 aaKnown RBP7.68□□□□□ -1.18
NUP54-208ENST00000508604 PPFIA3O75145 1194 aa7.67□□□□□ -1.18
NUP54-208ENST00000508604 ZNF800Q2TB10 664 aaPredicted RBP eCLIP7.67□□□□□ -1.18
NUP54-208ENST00000508604 ARHGAP9Q9BRR9 750 aa7.67□□□□□ -1.18
NUP54-208ENST00000508604 SOS2Q07890 1332 aaPredicted RBP7.67□□□□□ -1.18
NUP54-208ENST00000508604 LORP23490 312 aaPredicted RBP7.67□□□□□ -1.18
NUP54-208ENST00000508604 PDXDC2PQ6P474 469 aa7.67□□□□□ -1.18
NUP54-208ENST00000508604 SLC10A4Q96EP9 437 aa7.67□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms