RNA–Protein interactions for RNA: ENST00000507449.1

LSM6-205, Transcript of LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 3

Gene LSM6, Length 371 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM6-205ENST00000507449 APBB1O00213 710 aa6.84□□□□□ -1.31
LSM6-205ENST00000507449 IRF5Q13568 498 aa6.84□□□□□ -1.31
LSM6-205ENST00000507449 SLC19A1P41440 591 aa6.83□□□□□ -1.32
LSM6-205ENST00000507449 DESI1Q6ICB0 168 aa6.83□□□□□ -1.32
LSM6-205ENST00000507449 USB1Q9BQ65 265 aaKnown RBP6.83□□□□□ -1.32
LSM6-205ENST00000507449 ZNF777Q9ULD5 760 aaPredicted RBP6.83□□□□□ -1.32
LSM6-205ENST00000507449 NR1I2O75469 434 aa6.82□□□□□ -1.32
LSM6-205ENST00000507449 ABL2P42684 1182 aa6.82□□□□□ -1.32
LSM6-205ENST00000507449 COPS2P61201 443 aa6.82□□□□□ -1.32
LSM6-205ENST00000507449 LYPD8Q6UX82 237 aa6.82□□□□□ -1.32
LSM6-205ENST00000507449 FAM160A2Q8N612 972 aaPredicted RBP6.82□□□□□ -1.32
LSM6-205ENST00000507449 NDUFB9Q9Y6M9 179 aa6.82□□□□□ -1.32
LSM6-205ENST00000507449 TLL1O43897 1013 aa6.81□□□□□ -1.32
LSM6-205ENST00000507449 FMNL1O95466 1100 aaPredicted RBP6.81□□□□□ -1.32
LSM6-205ENST00000507449 SUZ12Q15022 739 aaKnown RBP6.81□□□□□ -1.32
LSM6-205ENST00000507449 NR6A1Q15406 480 aa6.81□□□□□ -1.32
LSM6-205ENST00000507449 POM121CA8CG34 1229 aa6.8□□□□□ -1.32
LSM6-205ENST00000507449 C11orf95C9JLR9 678 aaPredicted RBP6.8□□□□□ -1.32
LSM6-205ENST00000507449 ZNF598Q86UK7 904 aaKnown RBP6.8□□□□□ -1.32
LSM6-205ENST00000507449 PRDM9Q9NQV7 894 aa6.8□□□□□ -1.32
LSM6-205ENST00000507449 F12P00748 615 aaPredicted RBP6.79□□□□□ -1.32
LSM6-205ENST00000507449 JUNDP17535 347 aa6.79□□□□□ -1.32
LSM6-205ENST00000507449 MSS51Q4VC12 460 aa6.79□□□□□ -1.32
LSM6-205ENST00000507449 CCDC82Q8N4S0 544 aa6.79□□□□□ -1.32
LSM6-205ENST00000507449 ARXQ96QS3 562 aa6.79□□□□□ -1.32
LSM6-205ENST00000507449 SPSB2Q99619 263 aa6.79□□□□□ -1.32
LSM6-205ENST00000507449 ARID3AQ99856 593 aa6.79□□□□□ -1.32
LSM6-205ENST00000507449 ZNF330Q9Y3S2 320 aaPredicted RBP6.79□□□□□ -1.32
LSM6-205ENST00000507449 DXOO77932 396 aaKnown RBP6.78□□□□□ -1.32
LSM6-205ENST00000507449 TRIM67Q6ZTA4 783 aa6.78□□□□□ -1.32
LSM6-205ENST00000507449 ZNF516Q92618 1163 aa6.78□□□□□ -1.32
LSM6-205ENST00000507449 AAASQ9NRG9 546 aa6.78□□□□□ -1.32
LSM6-205ENST00000507449 ZPR1O75312 459 aa6.77□□□□□ -1.33
LSM6-205ENST00000507449 MMP16P51512 607 aa6.77□□□□□ -1.33
LSM6-205ENST00000507449 ADAMTS19Q8TE59 1207 aa6.77□□□□□ -1.33
LSM6-205ENST00000507449 MAP10Q9P2G4 905 aa6.77□□□□□ -1.33
LSM6-205ENST00000507449 NFX1Q12986 1120 aaKnown RBP6.76□□□□□ -1.33
LSM6-205ENST00000507449 PTPRNQ16849 979 aa6.76□□□□□ -1.33
LSM6-205ENST00000507449 SPRYD7Q5W111 196 aa6.76□□□□□ -1.33
LSM6-205ENST00000507449 PRM3Q9NNZ6 103 aa6.76□□□□□ -1.33
LSM6-205ENST00000507449 ADH1BP00325 375 aa6.75□□□□□ -1.33
LSM6-205ENST00000507449 VAC14Q08AM6 782 aa6.75□□□□□ -1.33
LSM6-205ENST00000507449 ST8SIA5O15466 376 aa6.74□□□□□ -1.33
LSM6-205ENST00000507449 ZNF697Q5TEC3 545 aa6.74□□□□□ -1.33
LSM6-205ENST00000507449 GLMNQ92990 594 aa6.74□□□□□ -1.33
LSM6-205ENST00000507449 CCNYL3P0C7X3 344 aa6.73□□□□□ -1.33
LSM6-205ENST00000507449 NKX2-3Q8TAU0 364 aa6.73□□□□□ -1.33
LSM6-205ENST00000507449 NUDT12Q9BQG2 462 aa6.73□□□□□ -1.33
LSM6-205ENST00000507449 EVA1BQ9NVM1 165 aa6.73□□□□□ -1.33
LSM6-205ENST00000507449 WASHC4Q2M389 1173 aa6.72□□□□□ -1.33
LSM6-205ENST00000507449 WWC1Q8IX03 1113 aa6.72□□□□□ -1.33
LSM6-205ENST00000507449 HOMEZQ8IX15 550 aa6.72□□□□□ -1.33
LSM6-205ENST00000507449 CRIPAKQ8N1N5 446 aa6.72□□□□□ -1.33
LSM6-205ENST00000507449 FKBPLQ9UIM3 349 aa6.72□□□□□ -1.33
LSM6-205ENST00000507449 KCNH2Q12809 1159 aa6.71□□□□□ -1.34
LSM6-205ENST00000507449 CTC1Q2NKJ3 1217 aa6.71□□□□□ -1.34
LSM6-205ENST00000507449 PTCRAQ6ISU1 281 aaPredicted RBP6.71□□□□□ -1.34
LSM6-205ENST00000507449 TNFRSF10AO00220 468 aa6.7□□□□□ -1.34
LSM6-205ENST00000507449 AXIN1O15169 862 aa6.7□□□□□ -1.34
LSM6-205ENST00000507449 S1PR4O95977 384 aa6.7□□□□□ -1.34
LSM6-205ENST00000507449 FBXO45P0C2W1 286 aa6.7□□□□□ -1.34
LSM6-205ENST00000507449 CTHP32929 405 aa6.7□□□□□ -1.34
LSM6-205ENST00000507449 HDGFL1Q5TGJ6 251 aa6.7□□□□□ -1.34
LSM6-205ENST00000507449 SLC16A10Q8TF71 515 aa6.7□□□□□ -1.34
LSM6-205ENST00000507449 CALR3Q96L12 384 aaKnown RBP6.7□□□□□ -1.34
LSM6-205ENST00000507449 OCSTAMPQ9BR26 566 aa6.7□□□□□ -1.34
LSM6-205ENST00000507449 SLC6A16Q9GZN6 736 aa6.7□□□□□ -1.34
LSM6-205ENST00000507449 ALG2Q9H553 416 aa6.7□□□□□ -1.34
LSM6-205ENST00000507449 SERPINA10Q9UK55 444 aa6.7□□□□□ -1.34
LSM6-205ENST00000507449 ANKLE1Q8NAG6 615 aa6.69□□□□□ -1.34
LSM6-205ENST00000507449 CCDC97Q96F63 343 aaPredicted RBP6.69□□□□□ -1.34
LSM6-205ENST00000507449 RNF223E7ERA6 249 aa6.68□□□□□ -1.34
LSM6-205ENST00000507449 TERTO14746 1132 aaKnown RBP6.68□□□□□ -1.34
LSM6-205ENST00000507449 NR1H3Q13133 447 aa6.68□□□□□ -1.34
LSM6-205ENST00000507449 UCN2Q96RP3 112 aa6.68□□□□□ -1.34
LSM6-205ENST00000507449 ZC3H4Q9UPT8 1303 aaKnown RBP6.68□□□□□ -1.34
LSM6-205ENST00000507449 GDF9O60383 454 aa6.67□□□□□ -1.34
LSM6-205ENST00000507449 ZSCAN1Q8NBB4 408 aa6.67□□□□□ -1.34
LSM6-205ENST00000507449 UNC93B1Q9H1C4 597 aa6.67□□□□□ -1.34
LSM6-205ENST00000507449 GMPR2Q9P2T1 348 aaKnown RBP6.67□□□□□ -1.34
LSM6-205ENST00000507449 ZBBXA8MT70 800 aa6.66□□□□□ -1.34
LSM6-205ENST00000507449 CCDC24Q8N4L8 307 aa6.66□□□□□ -1.34
LSM6-205ENST00000507449 PNMA1Q8ND90 353 aa6.66□□□□□ -1.34
LSM6-205ENST00000507449 FCF1Q9Y324 198 aaKnown RBP6.66□□□□□ -1.34
LSM6-205ENST00000507449 PPEF1O14829 653 aaPredicted RBP6.65□□□□□ -1.34
LSM6-205ENST00000507449 CFAP70Q5T0N1 1121 aa6.65□□□□□ -1.34
LSM6-205ENST00000507449 PDXDC2PQ6P474 469 aa6.65□□□□□ -1.34
LSM6-205ENST00000507449 SENP2Q9HC62 589 aa6.65□□□□□ -1.34
LSM6-205ENST00000507449 SOX11P35716 441 aa6.64□□□□□ -1.35
LSM6-205ENST00000507449 PLA2G2CQ5R387 149 aa6.64□□□□□ -1.35
LSM6-205ENST00000507449 SH3BP5LQ7L8J4 393 aa6.64□□□□□ -1.35
LSM6-205ENST00000507449 GPKOWQ92917 476 aaPredicted RBP eCLIP6.64□□□□□ -1.35
LSM6-205ENST00000507449 NBPF14Q5TI25 921 aa6.63□□□□□ -1.35
LSM6-205ENST00000507449 ARMC2Q8NEN0 867 aa6.63□□□□□ -1.35
LSM6-205ENST00000507449 PPP1R12CQ9BZL4 782 aa6.63□□□□□ -1.35
LSM6-205ENST00000507449 GPSM3Q9Y4H4 160 aa6.63□□□□□ -1.35
LSM6-205ENST00000507449 PALM3A6NDB9 673 aaPredicted RBP6.62□□□□□ -1.35
LSM6-205ENST00000507449 PIK3CDO00329 1044 aa6.62□□□□□ -1.35
LSM6-205ENST00000507449 AVPP01185 164 aa6.62□□□□□ -1.35
LSM6-205ENST00000507449 EIF4G2P78344 907 aaKnown RBP eCLIP6.62□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms