RNA–Protein interactions for RNA: ENST00000507293.1

HMGCS1-204, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

TSL 1 (best)

Gene HMGCS1, Length 708 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-204ENST00000507293 QRICH2Q9H0J4 1663 aa16.76■□□□□ 0.27
HMGCS1-204ENST00000507293 PAK3O75914 559 aaPredicted RBP16.76■□□□□ 0.27
HMGCS1-204ENST00000507293 SEPT12Q8IYM1 358 aa16.76■□□□□ 0.27
HMGCS1-204ENST00000507293 CDK19Q9BWU1 502 aa16.75■□□□□ 0.27
HMGCS1-204ENST00000507293 BLMP54132 1417 aaPredicted RBP16.75■□□□□ 0.27
HMGCS1-204ENST00000507293 NBPF1Q3BBV0 1214 aa16.74■□□□□ 0.27
HMGCS1-204ENST00000507293 BTG4Q9NY30 223 aa16.74■□□□□ 0.27
HMGCS1-204ENST00000507293 ONECUT3O60422 494 aaPredicted RBP16.72■□□□□ 0.27
HMGCS1-204ENST00000507293 POLR3AO14802 1390 aaPredicted RBP16.72■□□□□ 0.27
HMGCS1-204ENST00000507293 EP400Q96L91 3159 aa16.71■□□□□ 0.27
HMGCS1-204ENST00000507293 A0A0G2JS52 829 aa16.71■□□□□ 0.27
HMGCS1-204ENST00000507293 MYT1Q01538 1121 aa16.71■□□□□ 0.27
HMGCS1-204ENST00000507293 THSD7AQ9UPZ6 1657 aa16.71■□□□□ 0.27
HMGCS1-204ENST00000507293 ACEP12821 1306 aa16.7■□□□□ 0.26
HMGCS1-204ENST00000507293 TRPM1Q7Z4N2 1603 aa16.7■□□□□ 0.26
HMGCS1-204ENST00000507293 NRKQ7Z2Y5 1582 aa16.7■□□□□ 0.26
HMGCS1-204ENST00000507293 FAM98CQ17RN3 349 aaKnown RBP16.7■□□□□ 0.26
HMGCS1-204ENST00000507293 KRT27Q7Z3Y8 459 aa16.7■□□□□ 0.26
HMGCS1-204ENST00000507293 PRDM11Q9NQV5 511 aa16.7■□□□□ 0.26
HMGCS1-204ENST00000507293 ZRANB1Q9UGI0 708 aa16.7■□□□□ 0.26
HMGCS1-204ENST00000507293 CCDC61Q9Y6R9 512 aa16.7■□□□□ 0.26
HMGCS1-204ENST00000507293 KIAA0232Q92628 1395 aa16.69■□□□□ 0.26
HMGCS1-204ENST00000507293 CENPJQ9HC77 1338 aaPredicted RBP16.69■□□□□ 0.26
HMGCS1-204ENST00000507293 NUTM2GQ5VZR2 741 aa16.68■□□□□ 0.26
HMGCS1-204ENST00000507293 PPIP5K1Q6PFW1 1433 aa16.68■□□□□ 0.26
HMGCS1-204ENST00000507293 SPATA31A5Q5VU36 1347 aa16.68■□□□□ 0.26
HMGCS1-204ENST00000507293 SPATA31A7Q8IWB4 1347 aa16.68■□□□□ 0.26
HMGCS1-204ENST00000507293 RGPD1P0DJD0 1748 aa16.67■□□□□ 0.26
HMGCS1-204ENST00000507293 PLEKHG3A1L390 1219 aa16.67■□□□□ 0.26
HMGCS1-204ENST00000507293 SF3B2Q13435 895 aaKnown RBP16.67■□□□□ 0.26
HMGCS1-204ENST00000507293 NBPF8Q3BBV2 869 aa16.67■□□□□ 0.26
HMGCS1-204ENST00000507293 DEFB132Q7Z7B7 95 aa16.67■□□□□ 0.26
HMGCS1-204ENST00000507293 SRPK2P78362 688 aaKnown RBP16.66■□□□□ 0.26
HMGCS1-204ENST00000507293 CHRNA2Q15822 529 aa16.66■□□□□ 0.26
HMGCS1-204ENST00000507293 ZC3H6P61129 1189 aaKnown RBP16.65■□□□□ 0.26
HMGCS1-204ENST00000507293 L3MBTL2Q969R5 705 aa16.65■□□□□ 0.26
HMGCS1-204ENST00000507293 LMO7Q8WWI1 1683 aa16.65■□□□□ 0.26
HMGCS1-204ENST00000507293 TNS1Q9HBL0 1735 aaKnown RBP16.65■□□□□ 0.26
HMGCS1-204ENST00000507293 CABP2Q9NPB3 220 aa16.64■□□□□ 0.25
HMGCS1-204ENST00000507293 SIN3AQ96ST3 1273 aa16.63■□□□□ 0.25
HMGCS1-204ENST00000507293 ABTB2Q8N961 1025 aa16.62■□□□□ 0.25
HMGCS1-204ENST00000507293 STRN4Q9NRL3 753 aa16.62■□□□□ 0.25
HMGCS1-204ENST00000507293 USP19O94966 1318 aa16.62■□□□□ 0.25
HMGCS1-204ENST00000507293 SPATA31A1Q5TZJ5 1347 aa16.62■□□□□ 0.25
HMGCS1-204ENST00000507293 CAMTA1Q9Y6Y1 1673 aa16.62■□□□□ 0.25
HMGCS1-204ENST00000507293 AKAP12Q02952 1782 aa16.61■□□□□ 0.25
HMGCS1-204ENST00000507293 SSH2Q76I76 1423 aa16.61■□□□□ 0.25
HMGCS1-204ENST00000507293 PIK3C2AO00443 1686 aa16.6■□□□□ 0.25
HMGCS1-204ENST00000507293 NEUROD1Q13562 356 aa16.6■□□□□ 0.25
HMGCS1-204ENST00000507293 FAM182BQ5T319 152 aa16.6■□□□□ 0.25
HMGCS1-204ENST00000507293 CPDO75976 1380 aa16.6■□□□□ 0.25
HMGCS1-204ENST00000507293 USP6P35125 1406 aa16.6■□□□□ 0.25
HMGCS1-204ENST00000507293 BAG6P46379 1132 aa16.59■□□□□ 0.25
HMGCS1-204ENST00000507293 NLRP13Q86W25 1043 aa16.58■□□□□ 0.24
HMGCS1-204ENST00000507293 BRD4O60885 1362 aaPredicted RBP16.58■□□□□ 0.24
HMGCS1-204ENST00000507293 ROCK2O75116 1388 aaKnown RBP16.58■□□□□ 0.24
HMGCS1-204ENST00000507293 SLIT3O75094 1523 aa16.58■□□□□ 0.24
HMGCS1-204ENST00000507293 EVC2Q86UK5 1308 aa16.57■□□□□ 0.24
HMGCS1-204ENST00000507293 EVA1CP58658 441 aa16.57■□□□□ 0.24
HMGCS1-204ENST00000507293 CABP1Q9NZU7 370 aa16.57■□□□□ 0.24
HMGCS1-204ENST00000507293 USP35Q9P2H5 1018 aa16.57■□□□□ 0.24
HMGCS1-204ENST00000507293 LRP5O75197 1615 aa16.56■□□□□ 0.24
HMGCS1-204ENST00000507293 COL5A2P05997 1499 aaPredicted RBP16.55■□□□□ 0.24
HMGCS1-204ENST00000507293 GCP02774 474 aa16.55■□□□□ 0.24
HMGCS1-204ENST00000507293 LARP1Q6PKG0 1096 aaKnown RBP16.55■□□□□ 0.24
HMGCS1-204ENST00000507293 PARP4Q9UKK3 1724 aaKnown RBP16.55■□□□□ 0.24
HMGCS1-204ENST00000507293 DISP2A7MBM2 1401 aa16.54■□□□□ 0.24
HMGCS1-204ENST00000507293 WNK3Q9BYP7 1800 aa16.54■□□□□ 0.24
HMGCS1-204ENST00000507293 COL18A1P39060 1754 aa16.54■□□□□ 0.24
HMGCS1-204ENST00000507293 MON2Q7Z3U7 1717 aa16.53■□□□□ 0.24
HMGCS1-204ENST00000507293 EN1Q05925 392 aaPredicted RBP16.53■□□□□ 0.24
HMGCS1-204ENST00000507293 BARGINQ6ZT62 677 aa16.53■□□□□ 0.24
HMGCS1-204ENST00000507293 RGPD5Q99666 1765 aa16.53■□□□□ 0.24
HMGCS1-204ENST00000507293 ZBTB7CA1YPR0 619 aa16.52■□□□□ 0.24
HMGCS1-204ENST00000507293 NLRP6P59044 892 aa16.52■□□□□ 0.24
HMGCS1-204ENST00000507293 TCP11L2Q8N4U5 519 aa16.52■□□□□ 0.24
HMGCS1-204ENST00000507293 PSDA5PKW4 1024 aaPredicted RBP16.51■□□□□ 0.23
HMGCS1-204ENST00000507293 FAM196AQ6ZSG2 479 aa16.51■□□□□ 0.23
HMGCS1-204ENST00000507293 LRRC37A3O60309 1634 aa16.51■□□□□ 0.23
HMGCS1-204ENST00000507293 RREB1Q92766 1687 aa16.5■□□□□ 0.23
HMGCS1-204ENST00000507293 TRIM37O94972 964 aa16.5■□□□□ 0.23
HMGCS1-204ENST00000507293 CRB1P82279 1406 aa16.5■□□□□ 0.23
HMGCS1-204ENST00000507293 AATKQ6ZMQ8 1374 aa16.5■□□□□ 0.23
HMGCS1-204ENST00000507293 PDE3BQ13370 1112 aa16.49■□□□□ 0.23
HMGCS1-204ENST00000507293 TTC21BQ7Z4L5 1316 aa16.48■□□□□ 0.23
HMGCS1-204ENST00000507293 NUP188Q5SRE5 1749 aa16.48■□□□□ 0.23
HMGCS1-204ENST00000507293 CPSF1Q10570 1443 aaKnown RBP16.48■□□□□ 0.23
HMGCS1-204ENST00000507293 THRAP3Q9Y2W1 955 aaKnown RBP16.48■□□□□ 0.23
HMGCS1-204ENST00000507293 PEAK1Q9H792 1746 aa16.48■□□□□ 0.23
HMGCS1-204ENST00000507293 EZH2Q15910 746 aaKnown RBP16.47■□□□□ 0.23
HMGCS1-204ENST00000507293 SBNO2Q9Y2G9 1366 aa16.47■□□□□ 0.23
HMGCS1-204ENST00000507293 SBF2Q86WG5 1849 aa16.47■□□□□ 0.23
HMGCS1-204ENST00000507293 USP54Q70EL1 1684 aa16.46■□□□□ 0.23
HMGCS1-204ENST00000507293 NFAT5O94916 1531 aa16.46■□□□□ 0.23
HMGCS1-204ENST00000507293 ZNF692Q9BU19 519 aaPredicted RBP16.46■□□□□ 0.23
HMGCS1-204ENST00000507293 TTC21AQ8NDW8 1320 aa16.45■□□□□ 0.22
HMGCS1-204ENST00000507293 APBA3O96018 575 aa16.45■□□□□ 0.22
HMGCS1-204ENST00000507293 CARD11Q9BXL7 1154 aa16.45■□□□□ 0.22
HMGCS1-204ENST00000507293 KTN1Q86UP2 1357 aaKnown RBP16.45■□□□□ 0.22
HMGCS1-204ENST00000507293 TONSLQ96HA7 1378 aa16.45■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms