RNA–Protein interactions for RNA: ENST00000507257.5

NUP54-205, Transcript of nucleoporin 54, humanhuman

TSL 5

Gene NUP54, Length 1,938 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-205ENST00000507257 C14orf93Q9H972 538 aaKnown RBP22.28■■□□□ 1.16
NUP54-205ENST00000507257 SLC12A5Q9H2X9 1139 aa22.27■■□□□ 1.16
NUP54-205ENST00000507257 SMC4Q9NTJ3 1288 aa22.27■■□□□ 1.16
NUP54-205ENST00000507257 NUCB1Q02818 461 aa22.27■■□□□ 1.16
NUP54-205ENST00000507257 ZBTB40Q9NUA8 1239 aa22.27■■□□□ 1.16
NUP54-205ENST00000507257 HSP90AA2PQ14568 343 aaPredicted RBP22.26■■□□□ 1.15
NUP54-205ENST00000507257 IBTKQ9P2D0 1353 aaPredicted RBP22.26■■□□□ 1.15
NUP54-205ENST00000507257 TNPO1Q92973 898 aaKnown RBP22.25■■□□□ 1.15
NUP54-205ENST00000507257 ARHGAP31Q2M1Z3 1444 aa22.25■■□□□ 1.15
NUP54-205ENST00000507257 CLEC17AQ6ZS10 378 aa22.25■■□□□ 1.15
NUP54-205ENST00000507257 BMP2KLQ5H9B9 411 aa22.24■■□□□ 1.15
NUP54-205ENST00000507257 CD109Q6YHK3 1445 aa22.24■■□□□ 1.15
NUP54-205ENST00000507257 COL3A1P02461 1466 aaPredicted RBP22.24■■□□□ 1.15
NUP54-205ENST00000507257 KIF3BO15066 747 aa22.23■■□□□ 1.15
NUP54-205ENST00000507257 SSH1Q8WYL5 1049 aa22.23■■□□□ 1.15
NUP54-205ENST00000507257 ARXQ96QS3 562 aa22.23■■□□□ 1.15
NUP54-205ENST00000507257 PLEKHF1Q96S99 279 aa22.23■■□□□ 1.15
NUP54-205ENST00000507257 IPO8O15397 1037 aaKnown RBP22.23■■□□□ 1.15
NUP54-205ENST00000507257 TPM2P07951 284 aa22.23■■□□□ 1.15
NUP54-205ENST00000507257 U2AF1L5P0DN76 240 aaPredicted RBP22.23■■□□□ 1.15
NUP54-205ENST00000507257 U2AF1Q01081 240 aaKnown RBP eCLIP22.23■■□□□ 1.15
NUP54-205ENST00000507257 EXOSC9Q06265 439 aaKnown RBP22.23■■□□□ 1.15
NUP54-205ENST00000507257 ITPRIPQ8IWB1 547 aa22.23■■□□□ 1.15
NUP54-205ENST00000507257 MED14O60244 1454 aa22.23■■□□□ 1.15
NUP54-205ENST00000507257 TNNT2P45379 298 aaPredicted RBP22.22■■□□□ 1.15
NUP54-205ENST00000507257 BRPF1P55201 1214 aaPredicted RBP22.22■■□□□ 1.15
NUP54-205ENST00000507257 TRIM44Q96DX7 344 aaPredicted RBP22.22■■□□□ 1.15
NUP54-205ENST00000507257 RPGRIP1LQ68CZ1 1315 aa22.22■■□□□ 1.15
NUP54-205ENST00000507257 ALDH1L2Q3SY69 923 aa22.21■■□□□ 1.15
NUP54-205ENST00000507257 ERBB4Q15303 1308 aa22.21■■□□□ 1.15
NUP54-205ENST00000507257 ANKRD26Q9UPS8 1709 aa22.21■■□□□ 1.15
NUP54-205ENST00000507257 TMPOP42166 694 aaKnown RBP22.2■■□□□ 1.14
NUP54-205ENST00000507257 ZNF428Q96B54 188 aa22.2■■□□□ 1.14
NUP54-205ENST00000507257 PPP1R9BQ96SB3 815 aa22.2■■□□□ 1.14
NUP54-205ENST00000507257 ARHGEF28Q8N1W1 1705 aaKnown RBP22.2■■□□□ 1.14
NUP54-205ENST00000507257 TULP4Q9NRJ4 1543 aa22.2■■□□□ 1.14
NUP54-205ENST00000507257 TRIM35Q9UPQ4 493 aa22.19■■□□□ 1.14
NUP54-205ENST00000507257 HSP90AB1P08238 724 aaKnown RBP22.19■■□□□ 1.14
NUP54-205ENST00000507257 CCDC173Q0VFZ6 552 aa22.19■■□□□ 1.14
NUP54-205ENST00000507257 TMEM57Q8N5G2 664 aa22.19■■□□□ 1.14
NUP54-205ENST00000507257 GLI2P10070 1586 aa22.19■■□□□ 1.14
NUP54-205ENST00000507257 CHD1LQ86WJ1 897 aa22.18■■□□□ 1.14
NUP54-205ENST00000507257 TSR2Q969E8 191 aaKnown RBP22.18■■□□□ 1.14
NUP54-205ENST00000507257 KIF2CQ99661 725 aa22.18■■□□□ 1.14
NUP54-205ENST00000507257 CHMP4BQ9H444 224 aaKnown RBP22.18■■□□□ 1.14
NUP54-205ENST00000507257 NOB1Q9ULX3 412 aaKnown RBP22.18■■□□□ 1.14
NUP54-205ENST00000507257 EVC2Q86UK5 1308 aa22.18■■□□□ 1.14
NUP54-205ENST00000507257 GAS2L3Q86XJ1 694 aa22.18■■□□□ 1.14
NUP54-205ENST00000507257 TRAK1Q9UPV9 953 aa22.18■■□□□ 1.14
NUP54-205ENST00000507257 PPIP5K1Q6PFW1 1433 aa22.16■■□□□ 1.14
NUP54-205ENST00000507257 GCC1Q96CN9 775 aa22.16■■□□□ 1.14
NUP54-205ENST00000507257 KIDINS220Q9ULH0 1771 aa22.15■■□□□ 1.14
NUP54-205ENST00000507257 K7ELQ4 463 aaPredicted RBP22.15■■□□□ 1.14
NUP54-205ENST00000507257 PIK3R4Q99570 1358 aa22.15■■□□□ 1.14
NUP54-205ENST00000507257 CDC42BPGQ6DT37 1551 aa22.14■■□□□ 1.14
NUP54-205ENST00000507257 GOLGA6L22H0YM25 854 aa22.13■■□□□ 1.13
NUP54-205ENST00000507257 TERF1P54274 439 aa22.13■■□□□ 1.13
NUP54-205ENST00000507257 KLHL40Q2TBA0 621 aa22.12■■□□□ 1.13
NUP54-205ENST00000507257 PKNOX2Q96KN3 472 aa22.12■■□□□ 1.13
NUP54-205ENST00000507257 CFAP44Q96MT7 982 aa22.12■■□□□ 1.13
NUP54-205ENST00000507257 HS1BP3Q53T59 392 aa22.1■■□□□ 1.13
NUP54-205ENST00000507257 LNPKQ9C0E8 428 aa22.1■■□□□ 1.13
NUP54-205ENST00000507257 ZSCAN30Q86W11 494 aa22.1■■□□□ 1.13
NUP54-205ENST00000507257 ARHGAP45Q92619 1136 aa22.1■■□□□ 1.13
NUP54-205ENST00000507257 PTCH1Q13635 1447 aa22.09■■□□□ 1.13
NUP54-205ENST00000507257 PIK3C2BO00750 1634 aa22.09■■□□□ 1.13
NUP54-205ENST00000507257 PNPLA6Q8IY17 1366 aa22.09■■□□□ 1.13
NUP54-205ENST00000507257 NPATQ14207 1427 aa22.09■■□□□ 1.13
NUP54-205ENST00000507257 ZNF445P59923 1031 aa22.07■■□□□ 1.12
NUP54-205ENST00000507257 ANP32BQ92688 251 aaKnown RBP22.07■■□□□ 1.12
NUP54-205ENST00000507257 PDCL3Q9H2J4 239 aa22.07■■□□□ 1.12
NUP54-205ENST00000507257 HECW2Q9P2P5 1572 aa22.06■■□□□ 1.12
NUP54-205ENST00000507257 NASPP49321 788 aaPredicted RBP22.06■■□□□ 1.12
NUP54-205ENST00000507257 CLTCQ00610 1675 aaKnown RBP22.06■■□□□ 1.12
NUP54-205ENST00000507257 TBC1D9Q6ZT07 1266 aa22.06■■□□□ 1.12
NUP54-205ENST00000507257 A0A1W2PP64 1363 aa22.05■■□□□ 1.12
NUP54-205ENST00000507257 ZFYVE9O95405 1425 aa22.05■■□□□ 1.12
NUP54-205ENST00000507257 ZBTB7BO15156 539 aaPredicted RBP22.05■■□□□ 1.12
NUP54-205ENST00000507257 OFD1O75665 1012 aa22.05■■□□□ 1.12
NUP54-205ENST00000507257 RIPK4P57078 832 aa22.04■■□□□ 1.12
NUP54-205ENST00000507257 VSIG10Q8N0Z9 540 aa22.04■■□□□ 1.12
NUP54-205ENST00000507257 CAMSAP1Q5T5Y3 1602 aa22.04■■□□□ 1.12
NUP54-205ENST00000507257 U2SURPO15042 1029 aaKnown RBP22.04■■□□□ 1.12
NUP54-205ENST00000507257 CD2BP2O95400 341 aaKnown RBP22.04■■□□□ 1.12
NUP54-205ENST00000507257 ZMYND15Q9H091 742 aa22.04■■□□□ 1.12
NUP54-205ENST00000507257 BAG4O95429 457 aaKnown RBP22.03■■□□□ 1.12
NUP54-205ENST00000507257 TMEM132EQ6IEE7 984 aa22.03■■□□□ 1.12
NUP54-205ENST00000507257 NEXMIFQ5QGS0 1516 aa22.03■■□□□ 1.12
NUP54-205ENST00000507257 CDC45O75419 566 aa22.02■■□□□ 1.12
NUP54-205ENST00000507257 NUCB2P80303 420 aa22.02■■□□□ 1.12
NUP54-205ENST00000507257 PDZRN4Q6ZMN7 1036 aaPredicted RBP22.02■■□□□ 1.12
NUP54-205ENST00000507257 SSFA2P28290 1259 aa22.02■■□□□ 1.11
NUP54-205ENST00000507257 RABEP1Q15276 862 aa22.02■■□□□ 1.11
NUP54-205ENST00000507257 GAS2L2Q8NHY3 880 aa22.02■■□□□ 1.11
NUP54-205ENST00000507257 KIF24Q5T7B8 1368 aa22.01■■□□□ 1.11
NUP54-205ENST00000507257 ATAD2Q6PL18 1390 aa22.01■■□□□ 1.11
NUP54-205ENST00000507257 ANKRD45Q5TZF3 282 aa22.01■■□□□ 1.11
NUP54-205ENST00000507257 FRMPD1Q5SYB0 1578 aa22■■□□□ 1.11
NUP54-205ENST00000507257 FCHSD2O94868 740 aa22■■□□□ 1.11
NUP54-205ENST00000507257 DDX49Q9Y6V7 483 aaKnown RBP22■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms