RNA–Protein interactions for RNA: ENST00000506880.5

PDGFC-205, Transcript of platelet derived growth factor C, humanhuman

TSL 2

Gene PDGFC, Length 1,014 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFC-205ENST00000506880 SSH2Q76I76 1423 aa11.73□□□□□ -0.53
PDGFC-205ENST00000506880 NRKQ7Z2Y5 1582 aa11.73□□□□□ -0.53
PDGFC-205ENST00000506880 KRT28Q7Z3Y7 464 aa11.73□□□□□ -0.53
PDGFC-205ENST00000506880 CABP2Q9NPB3 220 aa11.73□□□□□ -0.53
PDGFC-205ENST00000506880 MYOM1P52179 1685 aa11.72□□□□□ -0.53
PDGFC-205ENST00000506880 DISP3Q9P2K9 1392 aa11.72□□□□□ -0.53
PDGFC-205ENST00000506880 POTEHQ6S545 545 aa11.72□□□□□ -0.53
PDGFC-205ENST00000506880 CABP1Q9NZU7 370 aa11.72□□□□□ -0.53
PDGFC-205ENST00000506880 ABCC6O95255 1503 aa11.71□□□□□ -0.53
PDGFC-205ENST00000506880 NSD2O96028 1365 aa11.71□□□□□ -0.53
PDGFC-205ENST00000506880 HSPA1LP34931 641 aa11.71□□□□□ -0.53
PDGFC-205ENST00000506880 USP31Q70CQ4 1352 aa11.7□□□□□ -0.54
PDGFC-205ENST00000506880 KTN1Q86UP2 1357 aaKnown RBP11.7□□□□□ -0.54
PDGFC-205ENST00000506880 PNPLA6Q8IY17 1366 aa11.7□□□□□ -0.54
PDGFC-205ENST00000506880 WASHC2AQ641Q2 1341 aa11.7□□□□□ -0.54
PDGFC-205ENST00000506880 MARF1Q9Y4F3 1742 aaKnown RBP11.7□□□□□ -0.54
PDGFC-205ENST00000506880 ILDR2Q71H61 639 aa11.7□□□□□ -0.54
PDGFC-205ENST00000506880 CD163L1Q9NR16 1453 aa11.7□□□□□ -0.54
PDGFC-205ENST00000506880 NLRP13Q86W25 1043 aa11.69□□□□□ -0.54
PDGFC-205ENST00000506880 NPC1L1Q9UHC9 1359 aa11.68□□□□□ -0.54
PDGFC-205ENST00000506880 PMFBP1Q8TBY8 1022 aa11.68□□□□□ -0.54
PDGFC-205ENST00000506880 A0A1W2PP64 1363 aa11.67□□□□□ -0.54
PDGFC-205ENST00000506880 CCDC7Q96M83 1385 aa11.67□□□□□ -0.54
PDGFC-205ENST00000506880 USP19O94966 1318 aa11.67□□□□□ -0.54
PDGFC-205ENST00000506880 CRYBG1Q9Y4K1 1723 aa11.67□□□□□ -0.54
PDGFC-205ENST00000506880 NUTM2FA1L443 756 aa11.67□□□□□ -0.54
PDGFC-205ENST00000506880 KCNH5Q8NCM2 988 aa11.67□□□□□ -0.54
PDGFC-205ENST00000506880 KIF24Q5T7B8 1368 aa11.67□□□□□ -0.54
PDGFC-205ENST00000506880 ABCA3Q99758 1704 aa11.66□□□□□ -0.54
PDGFC-205ENST00000506880 SLIT3O75094 1523 aa11.66□□□□□ -0.54
PDGFC-205ENST00000506880 CGNL1Q0VF96 1302 aa11.66□□□□□ -0.54
PDGFC-205ENST00000506880 TTC21BQ7Z4L5 1316 aa11.66□□□□□ -0.54
PDGFC-205ENST00000506880 KIF20BQ96Q89 1820 aa11.66□□□□□ -0.54
PDGFC-205ENST00000506880 TMC1Q8TDI8 760 aa11.66□□□□□ -0.54
PDGFC-205ENST00000506880 SLC12A5Q9H2X9 1139 aa11.66□□□□□ -0.54
PDGFC-205ENST00000506880 NWD2Q9ULI1 1742 aa11.66□□□□□ -0.54
PDGFC-205ENST00000506880 ANKRD26Q9UPS8 1709 aa11.66□□□□□ -0.54
PDGFC-205ENST00000506880 CPDO75976 1380 aa11.66□□□□□ -0.54
PDGFC-205ENST00000506880 KIF7Q2M1P5 1343 aa11.65□□□□□ -0.54
PDGFC-205ENST00000506880 PHRF1Q9P1Y6 1649 aaKnown RBP11.65□□□□□ -0.54
PDGFC-205ENST00000506880 PIK3C2AO00443 1686 aa11.65□□□□□ -0.55
PDGFC-205ENST00000506880 TNKS1BP1Q9C0C2 1729 aaKnown RBP11.64□□□□□ -0.55
PDGFC-205ENST00000506880 ABTB2Q8N961 1025 aa11.64□□□□□ -0.55
PDGFC-205ENST00000506880 OVOS2A0A0J9YW53 1432 aa11.62□□□□□ -0.55
PDGFC-205ENST00000506880 OVOS2Q6IE36 1432 aa11.62□□□□□ -0.55
PDGFC-205ENST00000506880 COL14A1Q05707 1796 aaKnown RBP11.62□□□□□ -0.55
PDGFC-205ENST00000506880 PAK3O75914 559 aaPredicted RBP11.61□□□□□ -0.55
PDGFC-205ENST00000506880 KNSTRNQ9Y448 316 aa11.61□□□□□ -0.55
PDGFC-205ENST00000506880 AATKQ6ZMQ8 1374 aa11.61□□□□□ -0.55
PDGFC-205ENST00000506880 NLRP6P59044 892 aa11.6□□□□□ -0.55
PDGFC-205ENST00000506880 ZNF772Q68DY9 489 aaPredicted RBP11.6□□□□□ -0.55
PDGFC-205ENST00000506880 COG3Q96JB2 828 aa11.6□□□□□ -0.55
PDGFC-205ENST00000506880 NSD3Q9BZ95 1437 aa11.6□□□□□ -0.55
PDGFC-205ENST00000506880 RTL1A6NKG5 1358 aa11.59□□□□□ -0.55
PDGFC-205ENST00000506880 FNBP4Q8N3X1 1017 aaPredicted RBP11.59□□□□□ -0.55
PDGFC-205ENST00000506880 FAM208AQ9UK61 1670 aaKnown RBP11.59□□□□□ -0.55
PDGFC-205ENST00000506880 PLEKHG2Q9H7P9 1386 aa11.58□□□□□ -0.56
PDGFC-205ENST00000506880 FYB1O15117 783 aa11.58□□□□□ -0.56
PDGFC-205ENST00000506880 GCP02774 474 aa11.58□□□□□ -0.56
PDGFC-205ENST00000506880 HAP1P54257 671 aaPredicted RBP11.58□□□□□ -0.56
PDGFC-205ENST00000506880 DDX17Q92841 729 aaKnown RBP11.58□□□□□ -0.56
PDGFC-205ENST00000506880 PANK3Q9H999 370 aa11.58□□□□□ -0.56
PDGFC-205ENST00000506880 NFAT5O94916 1531 aa11.58□□□□□ -0.56
PDGFC-205ENST00000506880 SLIT2O94813 1529 aa11.57□□□□□ -0.56
PDGFC-205ENST00000506880 C11orf95C9JLR9 678 aaPredicted RBP11.57□□□□□ -0.56
PDGFC-205ENST00000506880 PER1O15534 1290 aaPredicted RBP11.57□□□□□ -0.56
PDGFC-205ENST00000506880 XPCQ01831 940 aaPredicted RBP11.57□□□□□ -0.56
PDGFC-205ENST00000506880 BLMP54132 1417 aaPredicted RBP11.57□□□□□ -0.56
PDGFC-205ENST00000506880 LMOD2Q6P5Q4 547 aa11.56□□□□□ -0.56
PDGFC-205ENST00000506880 CARD14Q9BXL6 1004 aa11.56□□□□□ -0.56
PDGFC-205ENST00000506880 LRP6O75581 1613 aa11.56□□□□□ -0.56
PDGFC-205ENST00000506880 CDK12Q9NYV4 1490 aaPredicted RBP11.56□□□□□ -0.56
PDGFC-205ENST00000506880 LMO7Q8WWI1 1683 aa11.55□□□□□ -0.56
PDGFC-205ENST00000506880 LTN1O94822 1766 aa11.55□□□□□ -0.56
PDGFC-205ENST00000506880 MEX3CQ5U5Q3 659 aaKnown RBP11.55□□□□□ -0.56
PDGFC-205ENST00000506880 ARHGEF25Q86VW2 580 aa11.55□□□□□ -0.56
PDGFC-205ENST00000506880 PLCH1Q4KWH8 1693 aa11.55□□□□□ -0.56
PDGFC-205ENST00000506880 COL18A1P39060 1754 aa11.54□□□□□ -0.56
PDGFC-205ENST00000506880 MAP2P11137 1827 aaKnown RBP11.54□□□□□ -0.56
PDGFC-205ENST00000506880 ZNF316A6NFI3 1004 aaPredicted RBP11.54□□□□□ -0.56
PDGFC-205ENST00000506880 AMER1Q5JTC6 1135 aaPredicted RBP11.54□□□□□ -0.56
PDGFC-205ENST00000506880 PRDM11Q9NQV5 511 aa11.54□□□□□ -0.56
PDGFC-205ENST00000506880 SMG6Q86US8 1419 aaKnown RBP11.53□□□□□ -0.56
PDGFC-205ENST00000506880 NRAPQ86VF7 1730 aa11.53□□□□□ -0.56
PDGFC-205ENST00000506880 NME9Q86XW9 330 aa11.53□□□□□ -0.56
PDGFC-205ENST00000506880 SUGP2Q8IX01 1082 aaKnown RBP eCLIP11.53□□□□□ -0.56
PDGFC-205ENST00000506880 UNC5CLQ8IV45 518 aa11.52□□□□□ -0.57
PDGFC-205ENST00000506880 NGLY1Q96IV0 654 aa11.52□□□□□ -0.57
PDGFC-205ENST00000506880 TRPC5Q9UL62 973 aaPredicted RBP11.52□□□□□ -0.57
PDGFC-205ENST00000506880 THRAP3Q9Y2W1 955 aaKnown RBP11.52□□□□□ -0.57
PDGFC-205ENST00000506880 FLT4P35916 1363 aa11.52□□□□□ -0.57
PDGFC-205ENST00000506880 KIAA0232Q92628 1395 aa11.52□□□□□ -0.57
PDGFC-205ENST00000506880 POLR3GLQ9BT43 218 aa11.51□□□□□ -0.57
PDGFC-205ENST00000506880 CDCA7Q9BWT1 371 aaPredicted RBP11.51□□□□□ -0.57
PDGFC-205ENST00000506880 INSRP06213 1382 aa11.51□□□□□ -0.57
PDGFC-205ENST00000506880 ATRNO75882 1429 aa11.51□□□□□ -0.57
PDGFC-205ENST00000506880 BCL9LQ86UU0 1499 aa11.51□□□□□ -0.57
PDGFC-205ENST00000506880 RALBP1Q15311 655 aa11.5□□□□□ -0.57
PDGFC-205ENST00000506880 VPS72Q15906 364 aa11.5□□□□□ -0.57
PDGFC-205ENST00000506880 IP6K1Q92551 441 aa11.5□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms