RNA–Protein interactions for RNA: ENST00000506690.1

SQSTM1-211, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 2,405 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-211ENST00000506690 CFAP53Q96M91 514 aa21.35■■□□□ 1.01
SQSTM1-211ENST00000506690 IFT172Q9UG01 1749 aa21.34■■□□□ 1.01
SQSTM1-211ENST00000506690 SSH1Q8WYL5 1049 aa21.34■■□□□ 1.01
SQSTM1-211ENST00000506690 ADGRF5Q8IZF2 1346 aa21.34■■□□□ 1.01
SQSTM1-211ENST00000506690 ARHGAP31Q2M1Z3 1444 aa21.34■■□□□ 1.01
SQSTM1-211ENST00000506690 CD2BP2O95400 341 aaKnown RBP21.34■■□□□ 1.01
SQSTM1-211ENST00000506690 KLHL40Q2TBA0 621 aa21.33■■□□□ 1.01
SQSTM1-211ENST00000506690 BMP2KLQ5H9B9 411 aa21.33■■□□□ 1.01
SQSTM1-211ENST00000506690 TSR2Q969E8 191 aaKnown RBP21.33■■□□□ 1.01
SQSTM1-211ENST00000506690 ZFYVE16Q7Z3T8 1539 aa21.33■■□□□ 1
SQSTM1-211ENST00000506690 CFAP74Q9C0B2 1584 aa21.33■■□□□ 1
SQSTM1-211ENST00000506690 RIMBP3CA6NJZ7 1639 aa21.33■■□□□ 1
SQSTM1-211ENST00000506690 RIMBP3BA6NNM3 1639 aa21.33■■□□□ 1
SQSTM1-211ENST00000506690 RIMBP3Q9UFD9 1639 aa21.33■■□□□ 1
SQSTM1-211ENST00000506690 K7ELQ4 463 aaPredicted RBP21.33■■□□□ 1
SQSTM1-211ENST00000506690 EXOSC9Q06265 439 aaKnown RBP21.33■■□□□ 1
SQSTM1-211ENST00000506690 CYB5RLQ6IPT4 315 aa21.33■■□□□ 1
SQSTM1-211ENST00000506690 PDZRN4Q6ZMN7 1036 aaPredicted RBP21.32■■□□□ 1
SQSTM1-211ENST00000506690 ZC3H13Q5T200 1668 aaKnown RBP21.32■■□□□ 1
SQSTM1-211ENST00000506690 NOS1P29475 1434 aa21.32■■□□□ 1
SQSTM1-211ENST00000506690 CD109Q6YHK3 1445 aa21.32■■□□□ 1
SQSTM1-211ENST00000506690 NRXN1Q9ULB1 1477 aa21.31■■□□□ 1
SQSTM1-211ENST00000506690 TMEM57Q8N5G2 664 aa21.31■■□□□ 1
SQSTM1-211ENST00000506690 VWDEQ8N2E2 1590 aa21.31■■□□□ 1
SQSTM1-211ENST00000506690 RIPK4P57078 832 aa21.3■■□□□ 1
SQSTM1-211ENST00000506690 CHD1LQ86WJ1 897 aa21.3■■□□□ 1
SQSTM1-211ENST00000506690 ANP32BQ92688 251 aaKnown RBP21.3■■□□□ 1
SQSTM1-211ENST00000506690 SLC12A5Q9H2X9 1139 aa21.3■■□□□ 1
SQSTM1-211ENST00000506690 GOLGA6L22H0YM25 854 aa21.3■■□□□ 1
SQSTM1-211ENST00000506690 LNPKQ9C0E8 428 aa21.3■■□□□ 1
SQSTM1-211ENST00000506690 NOB1Q9ULX3 412 aaKnown RBP21.3■■□□□ 1
SQSTM1-211ENST00000506690 MSNP26038 577 aaKnown RBP21.29■■□□□ 1
SQSTM1-211ENST00000506690 SSFA2P28290 1259 aa21.29■■□□□ 1
SQSTM1-211ENST00000506690 CALD1Q05682 793 aaKnown RBP21.29■■□□□ 1
SQSTM1-211ENST00000506690 INO80Q9ULG1 1556 aaPredicted RBP21.29■■□□□ 1
SQSTM1-211ENST00000506690 HS1BP3Q53T59 392 aa21.29■■□□□ 1
SQSTM1-211ENST00000506690 ATP7AQ04656 1500 aa21.28■■□□□ 1
SQSTM1-211ENST00000506690 U2AF1L5P0DN76 240 aaPredicted RBP21.28■■□□□ 1
SQSTM1-211ENST00000506690 U2AF1Q01081 240 aaKnown RBP eCLIP21.28■■□□□ 1
SQSTM1-211ENST00000506690 SETBP1Q9Y6X0 1596 aa21.28■■□□□ 1
SQSTM1-211ENST00000506690 KIF1BO60333 1816 aa21.28■■□□□ 1
SQSTM1-211ENST00000506690 FOXD4L1Q9NU39 408 aa21.28■■□□□ 1
SQSTM1-211ENST00000506690 ABCC11Q96J66 1382 aa21.28■■□□□ 1
SQSTM1-211ENST00000506690 ZNF445P59923 1031 aa21.27■■□□□ 1
SQSTM1-211ENST00000506690 DDX49Q9Y6V7 483 aaKnown RBP21.27■■□□□ 1
SQSTM1-211ENST00000506690 KIF16BQ96L93 1317 aa21.27■■□□□ 1
SQSTM1-211ENST00000506690 BAG4O95429 457 aaKnown RBP21.27■■□□□ 1
SQSTM1-211ENST00000506690 UGGT1Q9NYU2 1555 aa21.26■□□□□ 0.99
SQSTM1-211ENST00000506690 KIF3BO15066 747 aa21.26■□□□□ 0.99
SQSTM1-211ENST00000506690 GAS2L2Q8NHY3 880 aa21.26■□□□□ 0.99
SQSTM1-211ENST00000506690 QRICH2Q9H0J4 1663 aa21.26■□□□□ 0.99
SQSTM1-211ENST00000506690 TRIM35Q9UPQ4 493 aa21.25■□□□□ 0.99
SQSTM1-211ENST00000506690 IL16Q14005 1332 aa21.24■□□□□ 0.99
SQSTM1-211ENST00000506690 PLEKHF1Q96S99 279 aa21.24■□□□□ 0.99
SQSTM1-211ENST00000506690 MAP7D2Q96T17 732 aa21.24■□□□□ 0.99
SQSTM1-211ENST00000506690 RBM42Q9BTD8 480 aaKnown RBP21.24■□□□□ 0.99
SQSTM1-211ENST00000506690 NOL7Q9UMY1 257 aaKnown RBP21.24■□□□□ 0.99
SQSTM1-211ENST00000506690 ZNF500O60304 480 aaPredicted RBP21.23■□□□□ 0.99
SQSTM1-211ENST00000506690 TBC1D9Q6ZT07 1266 aa21.23■□□□□ 0.99
SQSTM1-211ENST00000506690 MROH2AA6NES4 1674 aa21.23■□□□□ 0.99
SQSTM1-211ENST00000506690 NSD2O96028 1365 aa21.23■□□□□ 0.99
SQSTM1-211ENST00000506690 IPO8O15397 1037 aaKnown RBP21.23■□□□□ 0.99
SQSTM1-211ENST00000506690 TMPOP42166 694 aaKnown RBP21.23■□□□□ 0.99
SQSTM1-211ENST00000506690 PDLIM2Q96JY6 352 aa21.23■□□□□ 0.99
SQSTM1-211ENST00000506690 MED14O60244 1454 aa21.21■□□□□ 0.99
SQSTM1-211ENST00000506690 PPRC1Q5VV67 1664 aaKnown RBP21.21■□□□□ 0.99
SQSTM1-211ENST00000506690 RBM10P98175 930 aaKnown RBP21.2■□□□□ 0.99
SQSTM1-211ENST00000506690 EIF2AK3Q9NZJ5 1116 aaKnown RBP21.2■□□□□ 0.99
SQSTM1-211ENST00000506690 AK9Q5TCS8 1911 aa21.2■□□□□ 0.99
SQSTM1-211ENST00000506690 PRDM4Q9UKN5 801 aa21.2■□□□□ 0.98
SQSTM1-211ENST00000506690 GCC1Q96CN9 775 aa21.19■□□□□ 0.98
SQSTM1-211ENST00000506690 REREQ9P2R6 1566 aa21.19■□□□□ 0.98
SQSTM1-211ENST00000506690 ZSCAN23Q3MJ62 389 aa21.19■□□□□ 0.98
SQSTM1-211ENST00000506690 R3HCC1Q9Y3T6 440 aaKnown RBP21.19■□□□□ 0.98
SQSTM1-211ENST00000506690 PPIP5K1Q6PFW1 1433 aa21.19■□□□□ 0.98
SQSTM1-211ENST00000506690 ALDH1L2Q3SY69 923 aa21.18■□□□□ 0.98
SQSTM1-211ENST00000506690 ANKRD45Q5TZF3 282 aa21.18■□□□□ 0.98
SQSTM1-211ENST00000506690 NEO1Q92859 1461 aa21.17■□□□□ 0.98
SQSTM1-211ENST00000506690 CYP2E1P05181 493 aaPredicted RBP21.17■□□□□ 0.98
SQSTM1-211ENST00000506690 LMBRD1Q9NUN5 540 aa21.17■□□□□ 0.98
SQSTM1-211ENST00000506690 TRAK1Q9UPV9 953 aa21.17■□□□□ 0.98
SQSTM1-211ENST00000506690 ANKRD36BQ8N2N9 1353 aa21.16■□□□□ 0.98
SQSTM1-211ENST00000506690 RBSNQ9H1K0 784 aa21.16■□□□□ 0.98
SQSTM1-211ENST00000506690 ADGRB1O14514 1584 aa21.16■□□□□ 0.98
SQSTM1-211ENST00000506690 POGZQ7Z3K3 1410 aa21.16■□□□□ 0.98
SQSTM1-211ENST00000506690 NUCB2P80303 420 aa21.16■□□□□ 0.98
SQSTM1-211ENST00000506690 CAVIN1Q6NZI2 390 aaKnown RBP21.16■□□□□ 0.98
SQSTM1-211ENST00000506690 COL3A1P02461 1466 aaPredicted RBP21.16■□□□□ 0.98
SQSTM1-211ENST00000506690 MROH1Q8NDA8 1641 aa21.15■□□□□ 0.98
SQSTM1-211ENST00000506690 MCTP1Q6DN14 999 aa21.15■□□□□ 0.98
SQSTM1-211ENST00000506690 FAM13BQ9NYF5 915 aa21.15■□□□□ 0.98
SQSTM1-211ENST00000506690 KIDINS220Q9ULH0 1771 aa21.15■□□□□ 0.98
SQSTM1-211ENST00000506690 BRPF1P55201 1214 aaPredicted RBP21.15■□□□□ 0.98
SQSTM1-211ENST00000506690 GLI2P10070 1586 aa21.15■□□□□ 0.98
SQSTM1-211ENST00000506690 ZBTB7BO15156 539 aaPredicted RBP21.14■□□□□ 0.97
SQSTM1-211ENST00000506690 PUS7Q96PZ0 661 aaKnown RBP21.14■□□□□ 0.97
SQSTM1-211ENST00000506690 CDC45O75419 566 aa21.13■□□□□ 0.97
SQSTM1-211ENST00000506690 RABEP1Q15276 862 aa21.13■□□□□ 0.97
SQSTM1-211ENST00000506690 ZKSCAN5Q9Y2L8 839 aa21.13■□□□□ 0.97
SQSTM1-211ENST00000506690 ADGRB3O60242 1522 aa21.13■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms