RNA–Protein interactions for RNA: ENST00000504044.1

NFKB1-204, Transcript of nuclear factor kappa B subunit 1, humanhuman

TSL 2

Gene NFKB1, Length 580 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NFKB1-204ENST00000504044 CDK12Q9NYV4 1490 aaPredicted RBP25.33■■□□□ 1.65
NFKB1-204ENST00000504044 ATAD2Q6PL18 1390 aa25.32■■□□□ 1.64
NFKB1-204ENST00000504044 CABLES1Q8TDN4 633 aa25.32■■□□□ 1.64
NFKB1-204ENST00000504044 CCER1Q8TC90 406 aaPredicted RBP25.3■■□□□ 1.64
NFKB1-204ENST00000504044 CABP1Q9NZU7 370 aa25.3■■□□□ 1.64
NFKB1-204ENST00000504044 TOPAZ1Q8N9V7 1692 aa25.29■■□□□ 1.64
NFKB1-204ENST00000504044 UNC5CLQ8IV45 518 aa25.29■■□□□ 1.64
NFKB1-204ENST00000504044 TRPM3Q9HCF6 1732 aaPredicted RBP25.29■■□□□ 1.64
NFKB1-204ENST00000504044 ABTB2Q8N961 1025 aa25.27■■□□□ 1.64
NFKB1-204ENST00000504044 ZNF692Q9BU19 519 aaPredicted RBP25.27■■□□□ 1.64
NFKB1-204ENST00000504044 ATRNO75882 1429 aa25.26■■□□□ 1.63
NFKB1-204ENST00000504044 MARF1Q9Y4F3 1742 aaKnown RBP25.24■■□□□ 1.63
NFKB1-204ENST00000504044 ALS2Q96Q42 1657 aa25.24■■□□□ 1.63
NFKB1-204ENST00000504044 SLIT2O94813 1529 aa25.24■■□□□ 1.63
NFKB1-204ENST00000504044 BCL9LQ86UU0 1499 aa25.24■■□□□ 1.63
NFKB1-204ENST00000504044 NLRP13Q86W25 1043 aa25.24■■□□□ 1.63
NFKB1-204ENST00000504044 GJD4Q96KN9 370 aaPredicted RBP25.22■■□□□ 1.63
NFKB1-204ENST00000504044 PUS7Q96PZ0 661 aaKnown RBP25.22■■□□□ 1.63
NFKB1-204ENST00000504044 PRDM11Q9NQV5 511 aa25.22■■□□□ 1.63
NFKB1-204ENST00000504044 USP6P35125 1406 aa25.2■■□□□ 1.63
NFKB1-204ENST00000504044 FAM83GA6ND36 823 aa25.2■■□□□ 1.62
NFKB1-204ENST00000504044 NUTM2GQ5VZR2 741 aa25.19■■□□□ 1.62
NFKB1-204ENST00000504044 CCDC9Q9Y3X0 531 aaKnown RBP25.19■■□□□ 1.62
NFKB1-204ENST00000504044 ST20-MTHFSA0A0A6YYL1 179 aa25.18■■□□□ 1.62
NFKB1-204ENST00000504044 VPS72Q15906 364 aa25.18■■□□□ 1.62
NFKB1-204ENST00000504044 RGS12O14924 1447 aa25.18■■□□□ 1.62
NFKB1-204ENST00000504044 TMC1Q8TDI8 760 aa25.17■■□□□ 1.62
NFKB1-204ENST00000504044 HDGFL2Q7Z4V5 671 aaPredicted RBP25.16■■□□□ 1.62
NFKB1-204ENST00000504044 ABCA3Q99758 1704 aa25.16■■□□□ 1.62
NFKB1-204ENST00000504044 BTG4Q9NY30 223 aa25.16■■□□□ 1.62
NFKB1-204ENST00000504044 TTC21AQ8NDW8 1320 aa25.15■■□□□ 1.62
NFKB1-204ENST00000504044 TNKS1BP1Q9C0C2 1729 aaKnown RBP25.15■■□□□ 1.62
NFKB1-204ENST00000504044 NLRP6P59044 892 aa25.15■■□□□ 1.62
NFKB1-204ENST00000504044 USP47Q96K76 1375 aa25.15■■□□□ 1.62
NFKB1-204ENST00000504044 TMF1P82094 1093 aa25.14■■□□□ 1.62
NFKB1-204ENST00000504044 TERF2IPQ9NYB0 399 aa25.14■■□□□ 1.62
NFKB1-204ENST00000504044 KTN1Q86UP2 1357 aaKnown RBP25.14■■□□□ 1.61
NFKB1-204ENST00000504044 NINLQ9Y2I6 1382 aa25.14■■□□□ 1.61
NFKB1-204ENST00000504044 USP19O94966 1318 aa25.13■■□□□ 1.61
NFKB1-204ENST00000504044 CDCA8Q53HL2 280 aa25.13■■□□□ 1.61
NFKB1-204ENST00000504044 KIAA0232Q92628 1395 aa25.13■■□□□ 1.61
NFKB1-204ENST00000504044 NWD2Q9ULI1 1742 aa25.12■■□□□ 1.61
NFKB1-204ENST00000504044 ZC3H6P61129 1189 aaKnown RBP25.12■■□□□ 1.61
NFKB1-204ENST00000504044 COL14A1Q05707 1796 aaKnown RBP25.12■■□□□ 1.61
NFKB1-204ENST00000504044 GCP02774 474 aa25.11■■□□□ 1.61
NFKB1-204ENST00000504044 TTC21BQ7Z4L5 1316 aa25.11■■□□□ 1.61
NFKB1-204ENST00000504044 TESK2Q96S53 571 aa25.1■■□□□ 1.61
NFKB1-204ENST00000504044 CPSF1Q10570 1443 aaKnown RBP25.1■■□□□ 1.61
NFKB1-204ENST00000504044 CPDO75976 1380 aa25.09■■□□□ 1.61
NFKB1-204ENST00000504044 KCNH5Q8NCM2 988 aa25.09■■□□□ 1.61
NFKB1-204ENST00000504044 PLCH1Q4KWH8 1693 aa25.09■■□□□ 1.61
NFKB1-204ENST00000504044 SSH2Q76I76 1423 aa25.08■■□□□ 1.61
NFKB1-204ENST00000504044 EVA1CP58658 441 aa25.07■■□□□ 1.6
NFKB1-204ENST00000504044 PHRF1Q9P1Y6 1649 aaKnown RBP25.06■■□□□ 1.6
NFKB1-204ENST00000504044 A0A0G2JS52 829 aa25.06■■□□□ 1.6
NFKB1-204ENST00000504044 MYT1Q01538 1121 aa25.06■■□□□ 1.6
NFKB1-204ENST00000504044 CHRNA2Q15822 529 aa25.06■■□□□ 1.6
NFKB1-204ENST00000504044 UPF1Q92900 1129 aaKnown RBP eCLIP25.06■■□□□ 1.6
NFKB1-204ENST00000504044 SLC12A5Q9H2X9 1139 aa25.05■■□□□ 1.6
NFKB1-204ENST00000504044 CRYBG1Q9Y4K1 1723 aa25.05■■□□□ 1.6
NFKB1-204ENST00000504044 STRN4Q9NRL3 753 aa25.04■■□□□ 1.6
NFKB1-204ENST00000504044 NRKQ7Z2Y5 1582 aa25.03■■□□□ 1.6
NFKB1-204ENST00000504044 SUGP2Q8IX01 1082 aaKnown RBP eCLIP25.02■■□□□ 1.6
NFKB1-204ENST00000504044 SEPT12Q8IYM1 358 aa25.02■■□□□ 1.6
NFKB1-204ENST00000504044 EDC4Q6P2E9 1401 aaKnown RBP25.02■■□□□ 1.6
NFKB1-204ENST00000504044 ZBTB7CA1YPR0 619 aa25.01■■□□□ 1.59
NFKB1-204ENST00000504044 ONECUT3O60422 494 aaPredicted RBP25.01■■□□□ 1.59
NFKB1-204ENST00000504044 SPATA31A5Q5VU36 1347 aa25.01■■□□□ 1.59
NFKB1-204ENST00000504044 SPATA31A7Q8IWB4 1347 aa25.01■■□□□ 1.59
NFKB1-204ENST00000504044 GLI3P10071 1580 aa25.01■■□□□ 1.59
NFKB1-204ENST00000504044 SLIT3O75094 1523 aa24.99■■□□□ 1.59
NFKB1-204ENST00000504044 AKAP12Q02952 1782 aa24.99■■□□□ 1.59
NFKB1-204ENST00000504044 A0A1W2PP64 1363 aa24.98■■□□□ 1.59
NFKB1-204ENST00000504044 FAM98CQ17RN3 349 aaKnown RBP24.98■■□□□ 1.59
NFKB1-204ENST00000504044 AATKQ6ZMQ8 1374 aa24.97■■□□□ 1.59
NFKB1-204ENST00000504044 CCDC125Q86Z20 511 aa24.97■■□□□ 1.59
NFKB1-204ENST00000504044 NRAPQ86VF7 1730 aa24.97■■□□□ 1.59
NFKB1-204ENST00000504044 CD163L1Q9NR16 1453 aa24.96■■□□□ 1.59
NFKB1-204ENST00000504044 USP31Q70CQ4 1352 aa24.96■■□□□ 1.59
NFKB1-204ENST00000504044 EIF4G2P78344 907 aaKnown RBP eCLIP24.96■■□□□ 1.59
NFKB1-204ENST00000504044 KRT27Q7Z3Y8 459 aa24.96■■□□□ 1.59
NFKB1-204ENST00000504044 PIK3C2AO00443 1686 aa24.95■■□□□ 1.58
NFKB1-204ENST00000504044 SPATA31A1Q5TZJ5 1347 aa24.95■■□□□ 1.58
NFKB1-204ENST00000504044 ANKRD36BQ8N2N9 1353 aa24.94■■□□□ 1.58
NFKB1-204ENST00000504044 SOX12O15370 315 aa24.94■■□□□ 1.58
NFKB1-204ENST00000504044 MON2Q7Z3U7 1717 aa24.94■■□□□ 1.58
NFKB1-204ENST00000504044 NME9Q86XW9 330 aa24.93■■□□□ 1.58
NFKB1-204ENST00000504044 THRAP3Q9Y2W1 955 aaKnown RBP24.93■■□□□ 1.58
NFKB1-204ENST00000504044 ARHGEF25Q86VW2 580 aa24.92■■□□□ 1.58
NFKB1-204ENST00000504044 USP35Q9P2H5 1018 aa24.92■■□□□ 1.58
NFKB1-204ENST00000504044 SF3B2Q13435 895 aaKnown RBP24.91■■□□□ 1.58
NFKB1-204ENST00000504044 TCP11L2Q8N4U5 519 aa24.91■■□□□ 1.58
NFKB1-204ENST00000504044 LARP1Q6PKG0 1096 aaKnown RBP24.9■■□□□ 1.58
NFKB1-204ENST00000504044 BARGINQ6ZT62 677 aa24.9■■□□□ 1.58
NFKB1-204ENST00000504044 COG3Q96JB2 828 aa24.9■■□□□ 1.58
NFKB1-204ENST00000504044 CAMTA1Q9Y6Y1 1673 aa24.9■■□□□ 1.58
NFKB1-204ENST00000504044 COL5A2P05997 1499 aaPredicted RBP24.89■■□□□ 1.57
NFKB1-204ENST00000504044 LMO7Q8WWI1 1683 aa24.88■■□□□ 1.57
NFKB1-204ENST00000504044 CRB1P82279 1406 aa24.87■■□□□ 1.57
NFKB1-204ENST00000504044 CSB-PGBD3P0DP91 1061 aa24.87■■□□□ 1.57
Retrieved 100 of 20,778 RNA–protein pairs in 9.5 ms