RNA–Protein interactions for RNA: ENST00000504011.5

PDLIM3-204, Transcript of PDZ and LIM domain 3, humanhuman

TSL 1 (best)

Gene PDLIM3, Length 2,819 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3-204ENST00000504011 RRS1Q15050 365 aaKnown RBP19.71■□□□□ 0.74
PDLIM3-204ENST00000504011 PUS7Q96PZ0 661 aaKnown RBP19.7■□□□□ 0.74
PDLIM3-204ENST00000504011 SLC26A8Q96RN1 970 aa19.69■□□□□ 0.74
PDLIM3-204ENST00000504011 PLEKHF1Q96S99 279 aa19.69■□□□□ 0.74
PDLIM3-204ENST00000504011 MS4A1P11836 297 aa19.69■□□□□ 0.74
PDLIM3-204ENST00000504011 TRIM35Q9UPQ4 493 aa19.69■□□□□ 0.74
PDLIM3-204ENST00000504011 WDR63Q8IWG1 891 aa19.68■□□□□ 0.74
PDLIM3-204ENST00000504011 PHF23Q9BUL5 403 aaPredicted RBP19.67■□□□□ 0.74
PDLIM3-204ENST00000504011 POLKQ9UBT6 870 aa19.67■□□□□ 0.74
PDLIM3-204ENST00000504011 PRKAR2BP31323 418 aa19.67■□□□□ 0.74
PDLIM3-204ENST00000504011 IQSEC2Q5JU85 1478 aa19.67■□□□□ 0.74
PDLIM3-204ENST00000504011 NSD2O96028 1365 aa19.67■□□□□ 0.74
PDLIM3-204ENST00000504011 ELL2O00472 640 aaPredicted RBP19.66■□□□□ 0.74
PDLIM3-204ENST00000504011 MYH16Q9H6N6 1097 aa19.66■□□□□ 0.74
PDLIM3-204ENST00000504011 SMC4Q9NTJ3 1288 aa19.66■□□□□ 0.74
PDLIM3-204ENST00000504011 PCDHB15Q9Y5E8 787 aa19.66■□□□□ 0.74
PDLIM3-204ENST00000504011 WASLO00401 505 aaPredicted RBP19.66■□□□□ 0.74
PDLIM3-204ENST00000504011 PHACTR3Q96KR7 559 aa19.66■□□□□ 0.74
PDLIM3-204ENST00000504011 ARHGEF40Q8TER5 1519 aa19.65■□□□□ 0.74
PDLIM3-204ENST00000504011 NUDT16Q96DE0 195 aaKnown RBP19.65■□□□□ 0.74
PDLIM3-204ENST00000504011 NGEFQ8N5V2 710 aa19.65■□□□□ 0.74
PDLIM3-204ENST00000504011 PDE3AQ14432 1141 aa19.64■□□□□ 0.73
PDLIM3-204ENST00000504011 FTSJ3Q8IY81 847 aaKnown RBP19.63■□□□□ 0.73
PDLIM3-204ENST00000504011 C8orf34Q49A92 452 aa19.62■□□□□ 0.73
PDLIM3-204ENST00000504011 BCL11AQ9H165 835 aa19.62■□□□□ 0.73
PDLIM3-204ENST00000504011 PPIP5K1Q6PFW1 1433 aa19.62■□□□□ 0.73
PDLIM3-204ENST00000504011 NLRP1Q9C000 1473 aa19.62■□□□□ 0.73
PDLIM3-204ENST00000504011 LTKP29376 864 aa19.61■□□□□ 0.73
PDLIM3-204ENST00000504011 SSH1Q8WYL5 1049 aa19.61■□□□□ 0.73
PDLIM3-204ENST00000504011 CCDC27Q2M243 656 aa19.61■□□□□ 0.73
PDLIM3-204ENST00000504011 NINLQ9Y2I6 1382 aa19.6■□□□□ 0.73
PDLIM3-204ENST00000504011 FAM161AQ3B820 660 aa19.59■□□□□ 0.73
PDLIM3-204ENST00000504011 PPP6R1Q9UPN7 881 aa19.59■□□□□ 0.73
PDLIM3-204ENST00000504011 USP32Q8NFA0 1604 aa19.59■□□□□ 0.73
PDLIM3-204ENST00000504011 ITPRIPQ8IWB1 547 aa19.59■□□□□ 0.73
PDLIM3-204ENST00000504011 DCTN1Q14203 1278 aa19.58■□□□□ 0.73
PDLIM3-204ENST00000504011 NOB1Q9ULX3 412 aaKnown RBP19.58■□□□□ 0.73
PDLIM3-204ENST00000504011 FAM83GA6ND36 823 aa19.57■□□□□ 0.72
PDLIM3-204ENST00000504011 PRR36Q9H6K5 1346 aa19.57■□□□□ 0.72
PDLIM3-204ENST00000504011 TRIM27P14373 513 aa19.57■□□□□ 0.72
PDLIM3-204ENST00000504011 PMFBP1Q8TBY8 1022 aa19.57■□□□□ 0.72
PDLIM3-204ENST00000504011 CCDC61Q9Y6R9 512 aa19.57■□□□□ 0.72
PDLIM3-204ENST00000504011 TNRQ92752 1358 aa19.57■□□□□ 0.72
PDLIM3-204ENST00000504011 ZKSCAN2Q63HK3 967 aa19.57■□□□□ 0.72
PDLIM3-204ENST00000504011 ABCF1Q8NE71 845 aaKnown RBP eCLIP19.57■□□□□ 0.72
PDLIM3-204ENST00000504011 COL3A1P02461 1466 aaPredicted RBP19.56■□□□□ 0.72
PDLIM3-204ENST00000504011 SEC24BO95487 1268 aa19.56■□□□□ 0.72
PDLIM3-204ENST00000504011 COG3Q96JB2 828 aa19.56■□□□□ 0.72
PDLIM3-204ENST00000504011 RSPH6AQ9H0K4 717 aa19.56■□□□□ 0.72
PDLIM3-204ENST00000504011 SPATA31D1Q6ZQQ2 1576 aa19.56■□□□□ 0.72
PDLIM3-204ENST00000504011 NEFMP07197 916 aa19.56■□□□□ 0.72
PDLIM3-204ENST00000504011 DZIP1LQ8IYY4 767 aaKnown RBP19.56■□□□□ 0.72
PDLIM3-204ENST00000504011 AGLP35573 1532 aa19.55■□□□□ 0.72
PDLIM3-204ENST00000504011 ROBO2Q9HCK4 1378 aa19.55■□□□□ 0.72
PDLIM3-204ENST00000504011 RBM33Q96EV2 1170 aaKnown RBP19.54■□□□□ 0.72
PDLIM3-204ENST00000504011 MVPQ14764 893 aaKnown RBP19.53■□□□□ 0.72
PDLIM3-204ENST00000504011 TSPYL6Q8N831 410 aa19.53■□□□□ 0.72
PDLIM3-204ENST00000504011 TRHP20396 242 aaPredicted RBP19.52■□□□□ 0.72
PDLIM3-204ENST00000504011 AEBP1Q8IUX7 1158 aa19.52■□□□□ 0.72
PDLIM3-204ENST00000504011 PLEKHG5O94827 1062 aa19.52■□□□□ 0.72
PDLIM3-204ENST00000504011 FCHSD2O94868 740 aa19.52■□□□□ 0.72
PDLIM3-204ENST00000504011 PDZRN3Q9UPQ7 1066 aa19.52■□□□□ 0.71
PDLIM3-204ENST00000504011 KIF13AQ9H1H9 1805 aa19.51■□□□□ 0.71
PDLIM3-204ENST00000504011 TMEM57Q8N5G2 664 aa19.51■□□□□ 0.71
PDLIM3-204ENST00000504011 TMEM2Q9UHN6 1383 aa19.51■□□□□ 0.71
PDLIM3-204ENST00000504011 HDGFP51858 240 aaKnown RBP19.51■□□□□ 0.71
PDLIM3-204ENST00000504011 PNPLA6Q8IY17 1366 aa19.5■□□□□ 0.71
PDLIM3-204ENST00000504011 IL13P35225 146 aa19.5■□□□□ 0.71
PDLIM3-204ENST00000504011 NUTM2GQ5VZR2 741 aa19.5■□□□□ 0.71
PDLIM3-204ENST00000504011 CPS1P31327 1500 aa19.49■□□□□ 0.71
PDLIM3-204ENST00000504011 ACEP12821 1306 aa19.49■□□□□ 0.71
PDLIM3-204ENST00000504011 DAXXQ9UER7 740 aaPredicted RBP19.49■□□□□ 0.71
PDLIM3-204ENST00000504011 NRXN3Q9Y4C0 1643 aa19.49■□□□□ 0.71
PDLIM3-204ENST00000504011 ATF7IPQ6VMQ6 1270 aa19.48■□□□□ 0.71
PDLIM3-204ENST00000504011 C1orf115Q9H7X2 142 aa19.48■□□□□ 0.71
PDLIM3-204ENST00000504011 LRRC7Q96NW7 1537 aa19.48■□□□□ 0.71
PDLIM3-204ENST00000504011 DEKP35659 375 aaKnown RBP19.47■□□□□ 0.71
PDLIM3-204ENST00000504011 RTL5Q5HYW3 569 aaPredicted RBP19.47■□□□□ 0.71
PDLIM3-204ENST00000504011 MAP2P11137 1827 aaKnown RBP19.47■□□□□ 0.71
PDLIM3-204ENST00000504011 HSP90AB2PQ58FF8 381 aa19.47■□□□□ 0.71
PDLIM3-204ENST00000504011 SULT6B1Q6IMI4 303 aa19.47■□□□□ 0.71
PDLIM3-204ENST00000504011 ADGRB2O60241 1585 aa19.46■□□□□ 0.71
PDLIM3-204ENST00000504011 NFE2L2Q16236 605 aa19.46■□□□□ 0.71
PDLIM3-204ENST00000504011 AMOTL2Q9Y2J4 779 aa19.46■□□□□ 0.71
PDLIM3-204ENST00000504011 KRT24Q2M2I5 525 aa19.46■□□□□ 0.71
PDLIM3-204ENST00000504011 CPSF1Q10570 1443 aaKnown RBP19.46■□□□□ 0.71
PDLIM3-204ENST00000504011 REREQ9P2R6 1566 aa19.46■□□□□ 0.71
PDLIM3-204ENST00000504011 PNNQ9H307 717 aaKnown RBP19.45■□□□□ 0.7
PDLIM3-204ENST00000504011 SETD1AO15047 1707 aaKnown RBP19.45■□□□□ 0.7
PDLIM3-204ENST00000504011 EDC4Q6P2E9 1401 aaKnown RBP19.45■□□□□ 0.7
PDLIM3-204ENST00000504011 RWDD1Q9H446 243 aaPredicted RBP19.45■□□□□ 0.7
PDLIM3-204ENST00000504011 ATP7BP35670 1465 aa19.44■□□□□ 0.7
PDLIM3-204ENST00000504011 MBIPQ9NS73 344 aa19.44■□□□□ 0.7
PDLIM3-204ENST00000504011 EID1Q9Y6B2 187 aa19.43■□□□□ 0.7
PDLIM3-204ENST00000504011 KIF20BQ96Q89 1820 aa19.43■□□□□ 0.7
PDLIM3-204ENST00000504011 MED14O60244 1454 aa19.43■□□□□ 0.7
PDLIM3-204ENST00000504011 MCM10Q7L590 875 aa19.43■□□□□ 0.7
PDLIM3-204ENST00000504011 MIS18AQ9NYP9 233 aa19.43■□□□□ 0.7
PDLIM3-204ENST00000504011 C8orf58Q8NAV2 365 aa19.42■□□□□ 0.7
PDLIM3-204ENST00000504011 DLC1Q96QB1 1528 aa19.42■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms