RNA–Protein interactions for RNA: ENST00000503742.5

UBE2D3-216, Transcript of ubiquitin conjugating enzyme E2 D3, humanhuman

TSL 1 (best)

Gene UBE2D3, Length 1,977 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE2D3-216ENST00000503742 XRN1Q8IZH2 1706 aaKnown RBP28.14■■■□□ 2.09
UBE2D3-216ENST00000503742 SUGP2Q8IX01 1082 aaKnown RBP eCLIP28.13■■■□□ 2.09
UBE2D3-216ENST00000503742 PNPLA6Q8IY17 1366 aa28.13■■■□□ 2.09
UBE2D3-216ENST00000503742 ZNF692Q9BU19 519 aaPredicted RBP28.1■■■□□ 2.09
UBE2D3-216ENST00000503742 SETD1BQ9UPS6 1966 aaKnown RBP28.09■■■□□ 2.09
UBE2D3-216ENST00000503742 PIK3R4Q99570 1358 aa28.09■■■□□ 2.09
UBE2D3-216ENST00000503742 NCBP3Q53F19 620 aaKnown RBP28.07■■■□□ 2.08
UBE2D3-216ENST00000503742 PHF23Q9BUL5 403 aaPredicted RBP28.07■■■□□ 2.08
UBE2D3-216ENST00000503742 SPINK5Q9NQ38 1064 aaPredicted RBP28.07■■■□□ 2.08
UBE2D3-216ENST00000503742 PLEKHG3A1L390 1219 aa28.06■■■□□ 2.08
UBE2D3-216ENST00000503742 WWC1Q8IX03 1113 aa28.06■■■□□ 2.08
UBE2D3-216ENST00000503742 TCP11L2Q8N4U5 519 aa28.06■■■□□ 2.08
UBE2D3-216ENST00000503742 E9PSI1 815 aa28.06■■■□□ 2.08
UBE2D3-216ENST00000503742 U2AF1L5P0DN76 240 aaPredicted RBP28.06■■■□□ 2.08
UBE2D3-216ENST00000503742 U2AF1Q01081 240 aaKnown RBP eCLIP28.06■■■□□ 2.082e-12■□□□□ 11.1
UBE2D3-216ENST00000503742 B4GALNT3Q6L9W6 998 aa28.06■■■□□ 2.08
UBE2D3-216ENST00000503742 NME9Q86XW9 330 aa28.04■■■□□ 2.08
UBE2D3-216ENST00000503742 NRKQ7Z2Y5 1582 aa28.04■■■□□ 2.08
UBE2D3-216ENST00000503742 MAP2P11137 1827 aaKnown RBP28.04■■■□□ 2.08
UBE2D3-216ENST00000503742 TSHZ2Q9NRE2 1034 aa28.04■■■□□ 2.08
UBE2D3-216ENST00000503742 POLKQ9UBT6 870 aa28.03■■■□□ 2.08
UBE2D3-216ENST00000503742 DMRT2Q9Y5R5 561 aa28.03■■■□□ 2.08
UBE2D3-216ENST00000503742 NKTRP30414 1462 aaKnown RBP28.02■■■□□ 2.08
UBE2D3-216ENST00000503742 CCDC27Q2M243 656 aa28.02■■■□□ 2.08
UBE2D3-216ENST00000503742 ANKLE2Q86XL3 938 aa28.02■■■□□ 2.08
UBE2D3-216ENST00000503742 AATKQ6ZMQ8 1374 aa28.02■■■□□ 2.08
UBE2D3-216ENST00000503742 DIAPH1O60610 1272 aaKnown RBP28■■■□□ 2.07
UBE2D3-216ENST00000503742 PLEKHF1Q96S99 279 aa28■■■□□ 2.07
UBE2D3-216ENST00000503742 ACEP12821 1306 aa28■■■□□ 2.07
UBE2D3-216ENST00000503742 ZRANB1Q9UGI0 708 aa27.99■■■□□ 2.07
UBE2D3-216ENST00000503742 RRP7AQ9Y3A4 280 aaKnown RBP27.99■■■□□ 2.07
UBE2D3-216ENST00000503742 KCNA6P17658 529 aa27.98■■■□□ 2.07
UBE2D3-216ENST00000503742 FBLN1P23142 703 aa27.98■■■□□ 2.07
UBE2D3-216ENST00000503742 U2SURPO15042 1029 aaKnown RBP27.97■■■□□ 2.07
UBE2D3-216ENST00000503742 COG3Q96JB2 828 aa27.97■■■□□ 2.07
UBE2D3-216ENST00000503742 CHD2O14647 1828 aaKnown RBP27.97■■■□□ 2.07
UBE2D3-216ENST00000503742 USP6P35125 1406 aa27.97■■■□□ 2.07
UBE2D3-216ENST00000503742 TTC21BQ7Z4L5 1316 aa27.96■■■□□ 2.07
UBE2D3-216ENST00000503742 WDR63Q8IWG1 891 aa27.96■■■□□ 2.07
UBE2D3-216ENST00000503742 NUTM2FA1L443 756 aa27.95■■■□□ 2.07
UBE2D3-216ENST00000503742 NEUROD2Q15784 382 aa27.95■■■□□ 2.07
UBE2D3-216ENST00000503742 CDK12Q9NYV4 1490 aaPredicted RBP27.95■■■□□ 2.06
UBE2D3-216ENST00000503742 SSH2Q76I76 1423 aa27.95■■■□□ 2.06
UBE2D3-216ENST00000503742 EXOC6Q8TAG9 804 aa27.94■■■□□ 2.06
UBE2D3-216ENST00000503742 PLIN1O60240 522 aa27.93■■■□□ 2.06
UBE2D3-216ENST00000503742 RGPD8O14715 1765 aaPredicted RBP27.93■■■□□ 2.06
UBE2D3-216ENST00000503742 CCDC136Q96JN2 1154 aa27.91■■■□□ 2.06
UBE2D3-216ENST00000503742 EMILIN1Q9Y6C2 1016 aa27.91■■■□□ 2.06
UBE2D3-216ENST00000503742 ANKARQ7Z5J8 1434 aa27.91■■■□□ 2.06
UBE2D3-216ENST00000503742 OVOS2A0A0J9YW53 1432 aa27.9■■■□□ 2.06
UBE2D3-216ENST00000503742 OVOS2Q6IE36 1432 aa27.9■■■□□ 2.06
UBE2D3-216ENST00000503742 FMN2Q9NZ56 1722 aa27.9■■■□□ 2.06
UBE2D3-216ENST00000503742 PPM1GO15355 546 aaPredicted RBP27.89■■■□□ 2.06
UBE2D3-216ENST00000503742 PNNQ9H307 717 aaKnown RBP27.89■■■□□ 2.06
UBE2D3-216ENST00000503742 FCHSD2O94868 740 aa27.88■■■□□ 2.05
UBE2D3-216ENST00000503742 NALCNQ8IZF0 1738 aa27.88■■■□□ 2.05
UBE2D3-216ENST00000503742 TMPOP42166 694 aaKnown RBP27.88■■■□□ 2.05
UBE2D3-216ENST00000503742 LRRC7Q96NW7 1537 aa27.87■■■□□ 2.05
UBE2D3-216ENST00000503742 MAPK8IP3Q9UPT6 1336 aa27.86■■■□□ 2.05
UBE2D3-216ENST00000503742 IL13P35225 146 aa27.86■■■□□ 2.05
UBE2D3-216ENST00000503742 TTC21AQ8NDW8 1320 aa27.85■■■□□ 2.05
UBE2D3-216ENST00000503742 NPHP4O75161 1426 aaPredicted RBP27.85■■■□□ 2.05
UBE2D3-216ENST00000503742 RSPH6AQ9H0K4 717 aa27.84■■■□□ 2.05
UBE2D3-216ENST00000503742 GOLGA6L2Q8N9W4 650 aaPredicted RBP27.84■■■□□ 2.05
UBE2D3-216ENST00000503742 PMFBP1Q8TBY8 1022 aa27.84■■■□□ 2.05
UBE2D3-216ENST00000503742 USP31Q70CQ4 1352 aa27.84■■■□□ 2.05
UBE2D3-216ENST00000503742 RRS1Q15050 365 aaKnown RBP27.83■■■□□ 2.05
UBE2D3-216ENST00000503742 TRIM35Q9UPQ4 493 aa27.83■■■□□ 2.05
UBE2D3-216ENST00000503742 C20orf194Q5TEA3 1177 aa27.82■■■□□ 2.04
UBE2D3-216ENST00000503742 CRBNQ96SW2 442 aa27.82■■■□□ 2.04
UBE2D3-216ENST00000503742 NGDNQ8NEJ9 315 aaKnown RBP27.8■■■□□ 2.04
UBE2D3-216ENST00000503742 MYH16Q9H6N6 1097 aa27.79■■■□□ 2.04
UBE2D3-216ENST00000503742 BCAR3O75815 825 aa27.78■■■□□ 2.04
UBE2D3-216ENST00000503742 PRKAR2BP31323 418 aa27.78■■■□□ 2.04
UBE2D3-216ENST00000503742 IL16Q14005 1332 aa27.76■■■□□ 2.03
UBE2D3-216ENST00000503742 RIPK4P57078 832 aa27.76■■■□□ 2.03
UBE2D3-216ENST00000503742 PIK3C2AO00443 1686 aa27.75■■■□□ 2.03
UBE2D3-216ENST00000503742 ADGRL3Q9HAR2 1447 aa27.74■■■□□ 2.03
UBE2D3-216ENST00000503742 PEAK1Q9H792 1746 aa27.74■■■□□ 2.03
UBE2D3-216ENST00000503742 NWD1Q149M9 1564 aa27.73■■■□□ 2.03
UBE2D3-216ENST00000503742 HMOX1P09601 288 aa27.73■■■□□ 2.03
UBE2D3-216ENST00000503742 USP54Q70EL1 1684 aa27.71■■■□□ 2.03
UBE2D3-216ENST00000503742 NEFMP07197 916 aa27.71■■■□□ 2.03
UBE2D3-216ENST00000503742 RARSP54136 660 aaKnown RBP27.71■■■□□ 2.03
UBE2D3-216ENST00000503742 PHACTR3Q96KR7 559 aa27.71■■■□□ 2.03
UBE2D3-216ENST00000503742 FANCIQ9NVI1 1328 aa27.7■■■□□ 2.02
UBE2D3-216ENST00000503742 NFE2L2Q16236 605 aa27.69■■■□□ 2.02
UBE2D3-216ENST00000503742 EIF4A2Q14240 407 aaKnown RBP27.68■■■□□ 2.02
UBE2D3-216ENST00000503742 MARF1Q9Y4F3 1742 aaKnown RBP27.68■■■□□ 2.02
UBE2D3-216ENST00000503742 CT47B1P0C2W7 299 aaPredicted RBP27.68■■■□□ 2.02
UBE2D3-216ENST00000503742 RBM33Q96EV2 1170 aaKnown RBP27.67■■■□□ 2.02
UBE2D3-216ENST00000503742 RGPD1P0DJD0 1748 aa27.67■■■□□ 2.02
UBE2D3-216ENST00000503742 PDE3AQ14432 1141 aa27.66■■■□□ 2.02
UBE2D3-216ENST00000503742 PHF8Q9UPP1 1060 aa27.66■■■□□ 2.02
UBE2D3-216ENST00000503742 RBM19Q9Y4C8 960 aaKnown RBP27.66■■■□□ 2.02
UBE2D3-216ENST00000503742 TSR2Q969E8 191 aaKnown RBP27.65■■■□□ 2.02
UBE2D3-216ENST00000503742 MAP3K19Q56UN5 1328 aa27.64■■■□□ 2.02
UBE2D3-216ENST00000503742 HSP90AB2PQ58FF8 381 aa27.64■■■□□ 2.01
UBE2D3-216ENST00000503742 SBNO1A3KN83 1393 aa27.63■■■□□ 2.01
UBE2D3-216ENST00000503742 DLG5Q8TDM6 1919 aa27.62■■■□□ 2.01
Retrieved 100 of 20,778 RNA–protein pairs in 68.9 ms