RNA–Protein interactions for RNA: ENST00000498751.1

SYNE1-231, Transcript of spectrin repeat containing nuclear envelope protein 1, human

TSL 4

Gene SYNE1, Length 578 nt, Biotype processed transcript, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE1-231	ENST00000498751	TRPC6	Q9Y210	931 aa		10.3	□□□□□ -0.76
SYNE1-231	ENST00000498751	SUPT16H	Q9Y5B9	1047 aa	Known RBP	10.3	□□□□□ -0.76
SYNE1-231	ENST00000498751	DNAJC5	Q9H3Z4	198 aa		10.29	□□□□□ -0.76
SYNE1-231	ENST00000498751	CD163L1	Q9NR16	1453 aa		10.29	□□□□□ -0.76
SYNE1-231	ENST00000498751	ADAMTSL3	P82987	1691 aa		10.28	□□□□□ -0.76
SYNE1-231	ENST00000498751	NSD3	Q9BZ95	1437 aa		10.28	□□□□□ -0.76
SYNE1-231	ENST00000498751	MLEC	Q14165	292 aa		10.28	□□□□□ -0.76
SYNE1-231	ENST00000498751	CGNL1	Q0VF96	1302 aa		10.28	□□□□□ -0.76
SYNE1-231	ENST00000498751	ZNF142	P52746	1687 aa	Predicted RBP	10.28	□□□□□ -0.76
SYNE1-231	ENST00000498751	PIK3R4	Q99570	1358 aa		10.27	□□□□□ -0.76
SYNE1-231	ENST00000498751	ANKRD26	Q9UPS8	1709 aa		10.27	□□□□□ -0.76
SYNE1-231	ENST00000498751	CC2D1B	Q5T0F9	858 aa	Known RBP	10.27	□□□□□ -0.77
SYNE1-231	ENST00000498751	NUDC	Q9Y266	331 aa		10.27	□□□□□ -0.77
SYNE1-231	ENST00000498751	MET	P08581	1390 aa		10.26	□□□□□ -0.77
SYNE1-231	ENST00000498751	CDC42BPG	Q6DT37	1551 aa		10.26	□□□□□ -0.77
SYNE1-231	ENST00000498751	CPSF1	Q10570	1443 aa	Known RBP	10.26	□□□□□ -0.77
SYNE1-231	ENST00000498751	PTCH1	Q13635	1447 aa		10.26	□□□□□ -0.77
SYNE1-231	ENST00000498751	POTEB2	H3BUK9	544 aa		10.26	□□□□□ -0.77
SYNE1-231	ENST00000498751	VASP	P50552	380 aa	Predicted RBP	10.26	□□□□□ -0.77
SYNE1-231	ENST00000498751	PRAM1	Q96QH2	718 aa		10.26	□□□□□ -0.77
SYNE1-231	ENST00000498751	SLC12A5	Q9H2X9	1139 aa		10.25	□□□□□ -0.77
SYNE1-231	ENST00000498751	TBX22	Q9Y458	520 aa		10.25	□□□□□ -0.77
SYNE1-231	ENST00000498751		A0A1W2PP64	1363 aa		10.25	□□□□□ -0.77
SYNE1-231	ENST00000498751	CEP170B	Q9Y4F5	1589 aa	Predicted RBP	10.24	□□□□□ -0.77
SYNE1-231	ENST00000498751	ATN1	P54259	1190 aa	Predicted RBP	10.24	□□□□□ -0.77
SYNE1-231	ENST00000498751	NUTM2D	Q5VT03	806 aa	Predicted RBP	10.24	□□□□□ -0.77
SYNE1-231	ENST00000498751	THEMIS	Q8N1K5	641 aa	Predicted RBP	10.24	□□□□□ -0.77
SYNE1-231	ENST00000498751	BMP2K	Q9NSY1	1161 aa	Predicted RBP	10.24	□□□□□ -0.77
SYNE1-231	ENST00000498751	ZNF521	Q96K83	1311 aa		10.24	□□□□□ -0.77
SYNE1-231	ENST00000498751	SHPRH	Q149N8	1683 aa		10.23	□□□□□ -0.77
SYNE1-231	ENST00000498751	FAM212A	Q96EL1	285 aa		10.23	□□□□□ -0.77
SYNE1-231	ENST00000498751	TERF2IP	Q9NYB0	399 aa		10.23	□□□□□ -0.77
SYNE1-231	ENST00000498751	POGK	Q9P215	609 aa		10.23	□□□□□ -0.77
SYNE1-231	ENST00000498751	XRN1	Q8IZH2	1706 aa	Known RBP	10.22	□□□□□ -0.77
SYNE1-231	ENST00000498751	NEFL	P07196	543 aa		10.22	□□□□□ -0.77
SYNE1-231	ENST00000498751	METRN	Q9UJH8	293 aa		10.22	□□□□□ -0.77
SYNE1-231	ENST00000498751	TOPAZ1	Q8N9V7	1692 aa		10.22	□□□□□ -0.77
SYNE1-231	ENST00000498751	WASL	O00401	505 aa	Predicted RBP	10.21	□□□□□ -0.77
SYNE1-231	ENST00000498751	LTK	P29376	864 aa		10.21	□□□□□ -0.77
SYNE1-231	ENST00000498751	EID1	Q9Y6B2	187 aa		10.21	□□□□□ -0.77
SYNE1-231	ENST00000498751	PNPLA6	Q8IY17	1366 aa		10.21	□□□□□ -0.78
SYNE1-231	ENST00000498751	EDC4	Q6P2E9	1401 aa	Known RBP	10.21	□□□□□ -0.78
SYNE1-231	ENST00000498751	MON2	Q7Z3U7	1717 aa		10.2	□□□□□ -0.78
SYNE1-231	ENST00000498751	RIMS1	Q86UR5	1692 aa	Known RBP	10.2	□□□□□ -0.78
SYNE1-231	ENST00000498751	SLC39A7	Q92504	469 aa		10.2	□□□□□ -0.78
SYNE1-231	ENST00000498751	CDK19	Q9BWU1	502 aa		10.2	□□□□□ -0.78
SYNE1-231	ENST00000498751	CABP2	Q9NPB3	220 aa		10.2	□□□□□ -0.78
SYNE1-231	ENST00000498751	PLEKHH1	Q9ULM0	1364 aa		10.2	□□□□□ -0.78
SYNE1-231	ENST00000498751	ADAMTS8	Q9UP79	889 aa		10.2	□□□□□ -0.78
SYNE1-231	ENST00000498751	PCDHB13	Q9Y5F0	798 aa		10.2	□□□□□ -0.78
SYNE1-231	ENST00000498751	COL3A1	P02461	1466 aa	Predicted RBP	10.19	□□□□□ -0.78
SYNE1-231	ENST00000498751	PTPRU	Q92729	1446 aa		10.19	□□□□□ -0.78
SYNE1-231	ENST00000498751	TIE1	P35590	1138 aa		10.19	□□□□□ -0.78
SYNE1-231	ENST00000498751	SRPK2	P78362	688 aa	Known RBP	10.19	□□□□□ -0.78
SYNE1-231	ENST00000498751	HDGFL2	Q7Z4V5	671 aa	Predicted RBP	10.19	□□□□□ -0.78
SYNE1-231	ENST00000498751	MORC1	Q86VD1	984 aa		10.19	□□□□□ -0.78
SYNE1-231	ENST00000498751	TXNDC2	Q86VQ3	553 aa		10.19	□□□□□ -0.78
SYNE1-231	ENST00000498751	STK26	Q9P289	416 aa		10.19	□□□□□ -0.78
SYNE1-231	ENST00000498751	AKAP12	Q02952	1782 aa		10.19	□□□□□ -0.78
SYNE1-231	ENST00000498751	IQSEC2	Q5JU85	1478 aa		10.18	□□□□□ -0.78
SYNE1-231	ENST00000498751	AATK	Q6ZMQ8	1374 aa		10.18	□□□□□ -0.78
SYNE1-231	ENST00000498751	ROBO2	Q9HCK4	1378 aa		10.18	□□□□□ -0.78
SYNE1-231	ENST00000498751	MINK1	Q8N4C8	1332 aa	Predicted RBP	10.18	□□□□□ -0.78
SYNE1-231	ENST00000498751	FYB1	O15117	783 aa		10.18	□□□□□ -0.78
SYNE1-231	ENST00000498751	C7	P10643	843 aa		10.18	□□□□□ -0.78
SYNE1-231	ENST00000498751	WDR43	Q15061	677 aa	Known RBP eCLIP	10.18	□□□□□ -0.78
SYNE1-231	ENST00000498751	TRMT2A	Q8IZ69	625 aa	Known RBP	10.18	□□□□□ -0.78
SYNE1-231	ENST00000498751	SGIP1	Q9BQI5	828 aa		10.18	□□□□□ -0.78
SYNE1-231	ENST00000498751	KIF20B	Q96Q89	1820 aa		10.18	□□□□□ -0.78
SYNE1-231	ENST00000498751	SIPA1L2	Q9P2F8	1722 aa	Predicted RBP	10.18	□□□□□ -0.78
SYNE1-231	ENST00000498751	NRK	Q7Z2Y5	1582 aa		10.18	□□□□□ -0.78
SYNE1-231	ENST00000498751	SETD1B	Q9UPS6	1966 aa	Known RBP	10.17	□□□□□ -0.78
SYNE1-231	ENST00000498751	CCDC27	Q2M243	656 aa		10.17	□□□□□ -0.78
SYNE1-231	ENST00000498751	IFNL1	Q8IU54	200 aa		10.17	□□□□□ -0.78
SYNE1-231	ENST00000498751	OTUD5	Q96G74	571 aa		10.17	□□□□□ -0.78
SYNE1-231	ENST00000498751	LRRC7	Q96NW7	1537 aa		10.17	□□□□□ -0.78
SYNE1-231	ENST00000498751	ANKAR	Q7Z5J8	1434 aa		10.16	□□□□□ -0.78
SYNE1-231	ENST00000498751	PLEKHG3	A1L390	1219 aa		10.16	□□□□□ -0.78
SYNE1-231	ENST00000498751	TTLL13P	A6NNM8	815 aa		10.16	□□□□□ -0.78
SYNE1-231	ENST00000498751	CEBPA	P49715	358 aa	Predicted RBP	10.16	□□□□□ -0.78
SYNE1-231	ENST00000498751	WAPL	Q7Z5K2	1190 aa		10.16	□□□□□ -0.78
SYNE1-231	ENST00000498751	PPIP5K1	Q6PFW1	1433 aa		10.16	□□□□□ -0.78
SYNE1-231	ENST00000498751	SSH2	Q76I76	1423 aa		10.16	□□□□□ -0.78
SYNE1-231	ENST00000498751	POTEJ	P0CG39	1038 aa		10.15	□□□□□ -0.78
SYNE1-231	ENST00000498751	DCAF8	Q5TAQ9	597 aa		10.15	□□□□□ -0.78
SYNE1-231	ENST00000498751	KLHL34	Q8N239	644 aa		10.15	□□□□□ -0.78
SYNE1-231	ENST00000498751	CFAP53	Q96M91	514 aa		10.15	□□□□□ -0.78
SYNE1-231	ENST00000498751	POTEF	A5A3E0	1075 aa		10.14	□□□□□ -0.79
SYNE1-231	ENST00000498751	MTHFS	P49914	203 aa		10.14	□□□□□ -0.79
SYNE1-231	ENST00000498751	CABP1	Q9NZU7	370 aa		10.14	□□□□□ -0.79
SYNE1-231	ENST00000498751	USP54	Q70EL1	1684 aa		10.14	□□□□□ -0.79
SYNE1-231	ENST00000498751	ITSN1	Q15811	1721 aa		10.13	□□□□□ -0.79
SYNE1-231	ENST00000498751	PYGB	P11216	843 aa		10.13	□□□□□ -0.79
SYNE1-231	ENST00000498751	SAFB2	Q14151	953 aa	Known RBP eCLIP	10.13	□□□□□ -0.79
SYNE1-231	ENST00000498751	NUDT16	Q96DE0	195 aa	Known RBP	10.13	□□□□□ -0.79
SYNE1-231	ENST00000498751	CHD2	O14647	1828 aa	Known RBP	10.12	□□□□□ -0.79
SYNE1-231	ENST00000498751	PRR36	Q9H6K5	1346 aa		10.12	□□□□□ -0.79
SYNE1-231	ENST00000498751	CDK12	Q9NYV4	1490 aa	Predicted RBP	10.12	□□□□□ -0.79
SYNE1-231	ENST00000498751	GOLGA2	Q08379	1002 aa		10.12	□□□□□ -0.79
SYNE1-231	ENST00000498751	SLFN5	Q08AF3	891 aa		10.12	□□□□□ -0.79

Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms