RNA–Protein interactions for RNA: ENST00000497026.5

CSMD3-208, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best)

Gene CSMD3, Length 1,406 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-208ENST00000497026 DIXDC1Q155Q3 683 aa8.74□□□□□ -1.01
CSMD3-208ENST00000497026 AAASQ9NRG9 546 aa8.74□□□□□ -1.01
CSMD3-208ENST00000497026 HRCP23327 699 aa8.73□□□□□ -1.01
CSMD3-208ENST00000497026 FANCD2Q9BXW9 1451 aa8.73□□□□□ -1.01
CSMD3-208ENST00000497026 CEP164Q9UPV0 1460 aa8.73□□□□□ -1.01
CSMD3-208ENST00000497026 MRC2Q9UBG0 1479 aa8.72□□□□□ -1.01
CSMD3-208ENST00000497026 CFAP99D6REC4 459 aa8.72□□□□□ -1.01
CSMD3-208ENST00000497026 POLR3EQ9NVU0 708 aa8.72□□□□□ -1.01
CSMD3-208ENST00000497026 WDR62O43379 1518 aa8.72□□□□□ -1.01
CSMD3-208ENST00000497026 CCNYL3P0C7X3 344 aa8.71□□□□□ -1.01
CSMD3-208ENST00000497026 SKOR1P84550 965 aa8.71□□□□□ -1.01
CSMD3-208ENST00000497026 QPCTQ16769 361 aa8.71□□□□□ -1.01
CSMD3-208ENST00000497026 CYP4X1Q8N118 509 aa8.71□□□□□ -1.01
CSMD3-208ENST00000497026 TSC1Q92574 1164 aa8.71□□□□□ -1.01
CSMD3-208ENST00000497026 KDM4CQ9H3R0 1056 aa8.71□□□□□ -1.01
CSMD3-208ENST00000497026 NUTM2BA6NNL0 878 aaPredicted RBP8.71□□□□□ -1.02
CSMD3-208ENST00000497026 NUTM2EB1AL46 878 aaPredicted RBP8.71□□□□□ -1.02
CSMD3-208ENST00000497026 GJA5P36382 358 aa8.71□□□□□ -1.02
CSMD3-208ENST00000497026 NUTM2DQ5VT03 806 aaPredicted RBP8.71□□□□□ -1.02
CSMD3-208ENST00000497026 NUTM2AQ8IVF1 878 aaPredicted RBP8.71□□□□□ -1.02
CSMD3-208ENST00000497026 MRGPRX2Q96LB1 330 aa8.71□□□□□ -1.02
CSMD3-208ENST00000497026 ZBTB3Q9H5J0 574 aa8.71□□□□□ -1.02
CSMD3-208ENST00000497026 SPDYE5A6NIY4 337 aa8.7□□□□□ -1.02
CSMD3-208ENST00000497026 CRIPAKQ8N1N5 446 aa8.7□□□□□ -1.02
CSMD3-208ENST00000497026 FAM117AQ9C073 453 aa8.7□□□□□ -1.02
CSMD3-208ENST00000497026 TOR4AQ9NXH8 423 aa8.7□□□□□ -1.02
CSMD3-208ENST00000497026 TTC24A2A3L6 582 aaPredicted RBP8.69□□□□□ -1.02
CSMD3-208ENST00000497026 WNT7AO00755 349 aa8.69□□□□□ -1.02
CSMD3-208ENST00000497026 ST8SIA5O15466 376 aa8.69□□□□□ -1.02
CSMD3-208ENST00000497026 PTPRNQ16849 979 aa8.69□□□□□ -1.02
CSMD3-208ENST00000497026 LINC01559Q495D7 138 aa8.69□□□□□ -1.02
CSMD3-208ENST00000497026 LOC100996750A0A140TA64 210 aa8.68□□□□□ -1.02
CSMD3-208ENST00000497026 RTL5Q5HYW3 569 aaPredicted RBP8.68□□□□□ -1.02
CSMD3-208ENST00000497026 RC3H1Q5TC82 1133 aaKnown RBP8.68□□□□□ -1.02
CSMD3-208ENST00000497026 KRTAP4-6Q9BYQ5 205 aa8.68□□□□□ -1.02
CSMD3-208ENST00000497026 URB2Q14146 1524 aaKnown RBP8.68□□□□□ -1.02
CSMD3-208ENST00000497026 FAM181BA6NEQ2 426 aa8.67□□□□□ -1.02
CSMD3-208ENST00000497026 CTHP32929 405 aa8.67□□□□□ -1.02
CSMD3-208ENST00000497026 CLK2P49760 499 aaKnown RBP8.67□□□□□ -1.02
CSMD3-208ENST00000497026 UNC93B1Q9H1C4 597 aa8.67□□□□□ -1.02
CSMD3-208ENST00000497026 EVA1BQ9NVM1 165 aa8.67□□□□□ -1.02
CSMD3-208ENST00000497026 ATP1B4Q9UN42 357 aaPredicted RBP8.67□□□□□ -1.02
CSMD3-208ENST00000497026 J3QL48 77 aa8.66□□□□□ -1.02
CSMD3-208ENST00000497026 PER1O15534 1290 aaPredicted RBP8.66□□□□□ -1.02
CSMD3-208ENST00000497026 KCNH2Q12809 1159 aa8.66□□□□□ -1.02
CSMD3-208ENST00000497026 BAP1Q92560 729 aa8.66□□□□□ -1.02
CSMD3-208ENST00000497026 C11orf95C9JLR9 678 aaPredicted RBP8.65□□□□□ -1.02
CSMD3-208ENST00000497026 SUPT5HO00267 1087 aaKnown RBP8.65□□□□□ -1.02
CSMD3-208ENST00000497026 LILRB3O75022 631 aa8.65□□□□□ -1.02
CSMD3-208ENST00000497026 PRPF38BQ5VTL8 546 aaKnown RBP8.65□□□□□ -1.02
CSMD3-208ENST00000497026 DESI1Q6ICB0 168 aa8.65□□□□□ -1.02
CSMD3-208ENST00000497026 LYPD8Q6UX82 237 aa8.65□□□□□ -1.02
CSMD3-208ENST00000497026 MAP10Q9P2G4 905 aa8.65□□□□□ -1.02
CSMD3-208ENST00000497026 WNT7BP56706 349 aa8.64□□□□□ -1.03
CSMD3-208ENST00000497026 NFX1Q12986 1120 aaKnown RBP8.64□□□□□ -1.03
CSMD3-208ENST00000497026 PROCA1Q8NCQ7 364 aaPredicted RBP8.64□□□□□ -1.03
CSMD3-208ENST00000497026 SNIP1Q8TAD8 396 aaKnown RBP8.64□□□□□ -1.03
CSMD3-208ENST00000497026 RSPH6AQ9H0K4 717 aa8.64□□□□□ -1.03
CSMD3-208ENST00000497026 PLEKHG3A1L390 1219 aa8.63□□□□□ -1.03
CSMD3-208ENST00000497026 SMPD1P17405 629 aa8.63□□□□□ -1.03
CSMD3-208ENST00000497026 SH3BP2P78314 561 aa8.63□□□□□ -1.03
CSMD3-208ENST00000497026 CTC1Q2NKJ3 1217 aa8.63□□□□□ -1.03
CSMD3-208ENST00000497026 FBXO31Q5XUX0 539 aaPredicted RBP8.63□□□□□ -1.03
CSMD3-208ENST00000497026 EHBP1Q8NDI1 1231 aa8.63□□□□□ -1.03
CSMD3-208ENST00000497026 DACH1Q9UI36 760 aa8.63□□□□□ -1.03
CSMD3-208ENST00000497026 AVPP01185 164 aa8.62□□□□□ -1.03
CSMD3-208ENST00000497026 NEUROD2Q15784 382 aa8.62□□□□□ -1.03
CSMD3-208ENST00000497026 TPRNQ4KMQ1 711 aa8.62□□□□□ -1.03
CSMD3-208ENST00000497026 AXIN1O15169 862 aa8.61□□□□□ -1.03
CSMD3-208ENST00000497026 ALDH1A1P00352 501 aa8.61□□□□□ -1.03
CSMD3-208ENST00000497026 TUSC1Q2TAM9 212 aa8.61□□□□□ -1.03
CSMD3-208ENST00000497026 DDRGK1Q96HY6 314 aa8.61□□□□□ -1.03
CSMD3-208ENST00000497026 TOPBP1Q92547 1522 aa8.6□□□□□ -1.03
CSMD3-208ENST00000497026 SKIV2LQ15477 1246 aaKnown RBP8.6□□□□□ -1.03
CSMD3-208ENST00000497026 HPS1Q92902 700 aa8.6□□□□□ -1.03
CSMD3-208ENST00000497026 GMPR2Q9P2T1 348 aaKnown RBP8.6□□□□□ -1.03
CSMD3-208ENST00000497026 DNMBPQ6XZF7 1577 aa8.6□□□□□ -1.03
CSMD3-208ENST00000497026 F12P00748 615 aaPredicted RBP8.59□□□□□ -1.03
CSMD3-208ENST00000497026 ZNF511Q8NB15 262 aa8.59□□□□□ -1.03
CSMD3-208ENST00000497026 SIAH2O43255 324 aa8.58□□□□□ -1.04
CSMD3-208ENST00000497026 SMCPP49901 116 aaPredicted RBP8.58□□□□□ -1.04
CSMD3-208ENST00000497026 CTDSPL2Q05D32 466 aa8.58□□□□□ -1.04
CSMD3-208ENST00000497026 SH3D19Q5HYK7 790 aa8.58□□□□□ -1.04
CSMD3-208ENST00000497026 HELBQ8NG08 1087 aaPredicted RBP8.58□□□□□ -1.04
CSMD3-208ENST00000497026 FOXJ1Q92949 421 aa8.58□□□□□ -1.04
CSMD3-208ENST00000497026 IL27Q8NEV9 243 aa8.57□□□□□ -1.04
CSMD3-208ENST00000497026 TLL2Q9Y6L7 1015 aa8.57□□□□□ -1.04
CSMD3-208ENST00000497026 ABCC8Q09428 1581 aa8.56□□□□□ -1.04
CSMD3-208ENST00000497026 TERTO14746 1132 aaKnown RBP8.54□□□□□ -1.04
CSMD3-208ENST00000497026 AGERQ15109 404 aa8.54□□□□□ -1.04
CSMD3-208ENST00000497026 LRRN4Q8WUT4 740 aa8.54□□□□□ -1.04
CSMD3-208ENST00000497026 GNL3Q9BVP2 549 aaKnown RBP eCLIP8.54□□□□□ -1.04
CSMD3-208ENST00000497026 TARBP1Q13395 1621 aaKnown RBP8.54□□□□□ -1.04
CSMD3-208ENST00000497026 CUX1P39880 1505 aa8.54□□□□□ -1.04
CSMD3-208ENST00000497026 POLA1P09884 1462 aaPredicted RBP8.54□□□□□ -1.04
CSMD3-208ENST00000497026 IFT140Q96RY7 1462 aa8.54□□□□□ -1.04
CSMD3-208ENST00000497026 BRPF1P55201 1214 aaPredicted RBP8.54□□□□□ -1.04
CSMD3-208ENST00000497026 WASF2Q9Y6W5 498 aa8.54□□□□□ -1.04
CSMD3-208ENST00000497026 ZNF608Q9ULD9 1512 aaPredicted RBP8.54□□□□□ -1.04
CSMD3-208ENST00000497026 AP1G2O75843 785 aa8.53□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms