RNA–Protein interactions for RNA: ENST00000494090.6

COL27A1-207, Transcript of collagen type XXVII alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL27A1, Length 5,329 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL27A1-207ENST00000494090 SLC12A5Q9H2X9 1139 aa23.01■■□□□ 1.27
COL27A1-207ENST00000494090 TBC1D2BQ9UPU7 963 aa23.01■■□□□ 1.27
COL27A1-207ENST00000494090 HIP1O00291 1037 aa23.01■■□□□ 1.27
COL27A1-207ENST00000494090 AIMP1Q12904 312 aaKnown RBP23.01■■□□□ 1.27
COL27A1-207ENST00000494090 SURF6O75683 361 aaKnown RBP23■■□□□ 1.27
COL27A1-207ENST00000494090 SART3Q15020 963 aaKnown RBP23■■□□□ 1.27
COL27A1-207ENST00000494090 VSIG10Q8N0Z9 540 aa23■■□□□ 1.27
COL27A1-207ENST00000494090 AEBP2Q6ZN18 517 aaPredicted RBP22.99■■□□□ 1.27
COL27A1-207ENST00000494090 TSR2Q969E8 191 aaKnown RBP22.99■■□□□ 1.27
COL27A1-207ENST00000494090 PRAM1Q96QH2 718 aa22.99■■□□□ 1.27
COL27A1-207ENST00000494090 SETQ01105 290 aaPredicted RBP22.99■■□□□ 1.27
COL27A1-207ENST00000494090 NEK4P51957 841 aa22.99■■□□□ 1.27
COL27A1-207ENST00000494090 CCDC184Q52MB2 194 aa22.98■■□□□ 1.27
COL27A1-207ENST00000494090 ERC1Q8IUD2 1116 aa22.98■■□□□ 1.27
COL27A1-207ENST00000494090 FSD1Q9BTV5 496 aa22.97■■□□□ 1.27
COL27A1-207ENST00000494090 TOPBP1Q92547 1522 aa22.97■■□□□ 1.27
COL27A1-207ENST00000494090 GNAI2P04899 355 aa22.97■■□□□ 1.27
COL27A1-207ENST00000494090 ABTB2Q8N961 1025 aa22.97■■□□□ 1.27
COL27A1-207ENST00000494090 NAT10Q9H0A0 1025 aaKnown RBP22.97■■□□□ 1.27
COL27A1-207ENST00000494090 IFT57Q9NWB7 429 aa22.97■■□□□ 1.27
COL27A1-207ENST00000494090 MVPQ14764 893 aaKnown RBP22.96■■□□□ 1.27
COL27A1-207ENST00000494090 TXNDC2Q86VQ3 553 aa22.96■■□□□ 1.27
COL27A1-207ENST00000494090 KIF6Q6ZMV9 814 aa22.96■■□□□ 1.27
COL27A1-207ENST00000494090 CCDC27Q2M243 656 aa22.96■■□□□ 1.27
COL27A1-207ENST00000494090 CAVIN1Q6NZI2 390 aaKnown RBP22.96■■□□□ 1.27
COL27A1-207ENST00000494090 ATF7IPQ6VMQ6 1270 aa22.96■■□□□ 1.27
COL27A1-207ENST00000494090 NAIPQ13075 1403 aa22.96■■□□□ 1.27
COL27A1-207ENST00000494090 IFT140Q96RY7 1462 aa22.96■■□□□ 1.27
COL27A1-207ENST00000494090 C1orf115Q9H7X2 142 aa22.96■■□□□ 1.27
COL27A1-207ENST00000494090 NUTM2GQ5VZR2 741 aa22.95■■□□□ 1.26
COL27A1-207ENST00000494090 ZNF771Q7L3S4 317 aaPredicted RBP22.95■■□□□ 1.26
COL27A1-207ENST00000494090 ZNF692Q9BU19 519 aaPredicted RBP22.95■■□□□ 1.26
COL27A1-207ENST00000494090 FOSBP53539 338 aa22.94■■□□□ 1.26
COL27A1-207ENST00000494090 POLA1P09884 1462 aaPredicted RBP22.94■■□□□ 1.26
COL27A1-207ENST00000494090 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP22.94■■□□□ 1.26
COL27A1-207ENST00000494090 SLC3A2P08195 630 aaKnown RBP22.94■■□□□ 1.26
COL27A1-207ENST00000494090 PDCP20941 246 aa22.94■■□□□ 1.26
COL27A1-207ENST00000494090 THEMISQ8N1K5 641 aaPredicted RBP22.94■■□□□ 1.26
COL27A1-207ENST00000494090 MRC2Q9UBG0 1479 aa22.93■■□□□ 1.26
COL27A1-207ENST00000494090 HMGXB3Q12766 1538 aa22.93■■□□□ 1.26
COL27A1-207ENST00000494090 CCT4P50991 539 aaKnown RBP22.93■■□□□ 1.26
COL27A1-207ENST00000494090 OLFM4Q6UX06 510 aa22.93■■□□□ 1.26
COL27A1-207ENST00000494090 PROSER2Q86WR7 435 aaPredicted RBP22.93■■□□□ 1.26
COL27A1-207ENST00000494090 TEX35Q5T0J7 233 aa22.92■■□□□ 1.26
COL27A1-207ENST00000494090 PRPF40AO75400 957 aaKnown RBP22.92■■□□□ 1.26
COL27A1-207ENST00000494090 TATP17735 454 aaPredicted RBP22.92■■□□□ 1.26
COL27A1-207ENST00000494090 RNF214Q8ND24 703 aa22.92■■□□□ 1.26
COL27A1-207ENST00000494090 CDK19Q9BWU1 502 aa22.92■■□□□ 1.26
COL27A1-207ENST00000494090 CDR1P51861 262 aa22.92■■□□□ 1.26
COL27A1-207ENST00000494090 R3HCC1Q9Y3T6 440 aaKnown RBP22.92■■□□□ 1.26
COL27A1-207ENST00000494090 TSPY26PQ9H489 355 aa22.91■■□□□ 1.26
COL27A1-207ENST00000494090 SLC4A2P04920 1241 aa22.91■■□□□ 1.26
COL27A1-207ENST00000494090 ESCO1Q5FWF5 840 aa22.91■■□□□ 1.26
COL27A1-207ENST00000494090 SLC52A1Q9NWF4 448 aa22.9■■□□□ 1.26
COL27A1-207ENST00000494090 RPGRIP1LQ68CZ1 1315 aa22.9■■□□□ 1.26
COL27A1-207ENST00000494090 SDF4Q9BRK5 362 aa22.9■■□□□ 1.26
COL27A1-207ENST00000494090 CCDC173Q0VFZ6 552 aa22.9■■□□□ 1.26
COL27A1-207ENST00000494090 CABP1Q9NZU7 370 aa22.89■■□□□ 1.26
COL27A1-207ENST00000494090 ARGLU1Q9NWB6 273 aaPredicted RBP22.89■■□□□ 1.25
COL27A1-207ENST00000494090 ANKRD30BQ9BXX2 1392 aa22.89■■□□□ 1.25
COL27A1-207ENST00000494090 SLFN5Q08AF3 891 aa22.89■■□□□ 1.25
COL27A1-207ENST00000494090 GNL3LQ9NVN8 582 aaKnown RBP22.89■■□□□ 1.25
COL27A1-207ENST00000494090 K7ELQ4 463 aaPredicted RBP22.88■■□□□ 1.25
COL27A1-207ENST00000494090 CT47A1Q5JQC4 288 aaPredicted RBP22.88■■□□□ 1.25
COL27A1-207ENST00000494090 CHD1LQ86WJ1 897 aa22.88■■□□□ 1.25
COL27A1-207ENST00000494090 ZNF428Q96B54 188 aa22.88■■□□□ 1.25
COL27A1-207ENST00000494090 MNS1Q8NEH6 495 aa22.88■■□□□ 1.25
COL27A1-207ENST00000494090 SULT6B1Q6IMI4 303 aa22.88■■□□□ 1.25
COL27A1-207ENST00000494090 ACBD3Q9H3P7 528 aa22.88■■□□□ 1.25
COL27A1-207ENST00000494090 NESP48681 1621 aa22.87■■□□□ 1.25
COL27A1-207ENST00000494090 MTERF4Q7Z6M4 381 aaKnown RBP22.87■■□□□ 1.25
COL27A1-207ENST00000494090 LRRCC1Q9C099 1032 aa22.87■■□□□ 1.25
COL27A1-207ENST00000494090 FYB1O15117 783 aa22.87■■□□□ 1.25
COL27A1-207ENST00000494090 CNKSR2Q8WXI2 1034 aa22.87■■□□□ 1.25
COL27A1-207ENST00000494090 EPRSP07814 1512 aaKnown RBP22.86■■□□□ 1.25
COL27A1-207ENST00000494090 BRPF3Q9ULD4 1205 aa22.86■■□□□ 1.25
COL27A1-207ENST00000494090 MAP7D2Q96T17 732 aa22.85■■□□□ 1.25
COL27A1-207ENST00000494090 EPS15P42566 896 aa22.85■■□□□ 1.25
COL27A1-207ENST00000494090 OFD1O75665 1012 aa22.85■■□□□ 1.25
COL27A1-207ENST00000494090 ODF2Q5BJF6 829 aa22.85■■□□□ 1.25
COL27A1-207ENST00000494090 ATAD2Q6PL18 1390 aa22.85■■□□□ 1.25
COL27A1-207ENST00000494090 HDGFL1Q5TGJ6 251 aa22.85■■□□□ 1.25
COL27A1-207ENST00000494090 CCDC158Q5M9N0 1113 aa22.84■■□□□ 1.25
COL27A1-207ENST00000494090 TRIM5Q9C035 493 aa22.84■■□□□ 1.25
COL27A1-207ENST00000494090 DNMBPQ6XZF7 1577 aa22.84■■□□□ 1.25
COL27A1-207ENST00000494090 DDX24Q9GZR7 859 aaKnown RBP eCLIP22.84■■□□□ 1.25
COL27A1-207ENST00000494090 KINO60870 393 aaKnown RBP22.84■■□□□ 1.25
COL27A1-207ENST00000494090 FCHSD2O94868 740 aa22.84■■□□□ 1.25
COL27A1-207ENST00000494090 DNAJC2Q99543 621 aaKnown RBP22.84■■□□□ 1.25
COL27A1-207ENST00000494090 CIZ1Q9ULV3 898 aaPredicted RBP22.83■■□□□ 1.25
COL27A1-207ENST00000494090 HMGB2P26583 209 aaKnown RBP22.83■■□□□ 1.25
COL27A1-207ENST00000494090 KLHL34Q8N239 644 aa22.83■■□□□ 1.25
COL27A1-207ENST00000494090 IKQ13123 557 aaPredicted RBP22.83■■□□□ 1.24
COL27A1-207ENST00000494090 RBM42Q9BTD8 480 aaKnown RBP22.83■■□□□ 1.24
COL27A1-207ENST00000494090 SRCIN1Q9C0H9 1055 aa22.83■■□□□ 1.24
COL27A1-207ENST00000494090 NAP1L1P55209 391 aaKnown RBP22.83■■□□□ 1.24
COL27A1-207ENST00000494090 RUFY1Q96T51 708 aa22.83■■□□□ 1.24
COL27A1-207ENST00000494090 TXLNAP40222 546 aa22.82■■□□□ 1.24
COL27A1-207ENST00000494090 SPG7Q9UQ90 795 aa22.82■■□□□ 1.24
COL27A1-207ENST00000494090 PIP4K2AP48426 406 aaPredicted RBP22.82■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms