RNA–Protein interactions for RNA: ENST00000493853.1

RBM39-238, Transcript of RNA binding motif protein 39, human

TSL 4

Gene RBM39, Length 567 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RBM39-238	ENST00000493853	RBM33	Q96EV2	1170 aa	Known RBP	11.38	□□□□□ -0.59
RBM39-238	ENST00000493853	CRISPLD2	Q9H0B8	497 aa		11.38	□□□□□ -0.59
RBM39-238	ENST00000493853	RIMS2	Q9UQ26	1411 aa		11.37	□□□□□ -0.59
RBM39-238	ENST00000493853	C14orf37	Q86TY3	774 aa		11.37	□□□□□ -0.59
RBM39-238	ENST00000493853	PLSCR2	Q9NRY7	297 aa		11.37	□□□□□ -0.59
RBM39-238	ENST00000493853	SYNM	O15061	1565 aa		11.37	□□□□□ -0.59
RBM39-238	ENST00000493853	POTEB3	A0JP26	581 aa		11.36	□□□□□ -0.59
RBM39-238	ENST00000493853	ZNF326	Q5BKZ1	582 aa	Known RBP	11.36	□□□□□ -0.59
RBM39-238	ENST00000493853	POTEB	Q6S5H4	581 aa		11.36	□□□□□ -0.59
RBM39-238	ENST00000493853	TBX22	Q9Y458	520 aa		11.36	□□□□□ -0.59
RBM39-238	ENST00000493853	PCDHGA4	Q9Y5G9	962 aa		11.36	□□□□□ -0.59
RBM39-238	ENST00000493853	ADGRB3	O60242	1522 aa		11.35	□□□□□ -0.59
RBM39-238	ENST00000493853	TRIM52	Q96A61	297 aa		11.35	□□□□□ -0.59
RBM39-238	ENST00000493853	CFAP44	Q96MT7	982 aa		11.35	□□□□□ -0.59
RBM39-238	ENST00000493853	PLEKHG1	Q9ULL1	1385 aa		11.35	□□□□□ -0.59
RBM39-238	ENST00000493853	MSH6	P52701	1360 aa		11.34	□□□□□ -0.59
RBM39-238	ENST00000493853	VARS2	Q5ST30	1063 aa	Known RBP	11.34	□□□□□ -0.59
RBM39-238	ENST00000493853	PAXIP1	Q6ZW49	1069 aa	Predicted RBP	11.34	□□□□□ -0.59
RBM39-238	ENST00000493853	LARP6	Q9BRS8	491 aa	Known RBP	11.34	□□□□□ -0.59
RBM39-238	ENST00000493853	NUDT7	P0C024	238 aa		11.33	□□□□□ -0.6
RBM39-238	ENST00000493853	PPP1R15B	Q5SWA1	713 aa		11.33	□□□□□ -0.6
RBM39-238	ENST00000493853	SLAIN2	Q9P270	581 aa		11.33	□□□□□ -0.6
RBM39-238	ENST00000493853	TET3	O43151	1660 aa		11.33	□□□□□ -0.6
RBM39-238	ENST00000493853	KDM5A	P29375	1690 aa	Known RBP	11.33	□□□□□ -0.6
RBM39-238	ENST00000493853	ZFYVE9	O95405	1425 aa		11.32	□□□□□ -0.6
RBM39-238	ENST00000493853	FAM135B	Q49AJ0	1406 aa		11.32	□□□□□ -0.6
RBM39-238	ENST00000493853	ATF3	P18847	181 aa		11.31	□□□□□ -0.6
RBM39-238	ENST00000493853	CADPS2	Q86UW7	1296 aa		11.31	□□□□□ -0.6
RBM39-238	ENST00000493853	PTCD2	Q8WV60	388 aa	Known RBP	11.31	□□□□□ -0.6
RBM39-238	ENST00000493853	STRCP1	A6NGW2	1772 aa		11.31	□□□□□ -0.6
RBM39-238	ENST00000493853	UNC13B	O14795	1591 aa		11.3	□□□□□ -0.6
RBM39-238	ENST00000493853	TBC1D12	O60347	775 aa		11.3	□□□□□ -0.6
RBM39-238	ENST00000493853	DDX27	Q96GQ7	796 aa	Known RBP	11.3	□□□□□ -0.6
RBM39-238	ENST00000493853	AMOTL2	Q9Y2J4	779 aa		11.3	□□□□□ -0.6
RBM39-238	ENST00000493853	NKTR	P30414	1462 aa	Known RBP	11.3	□□□□□ -0.6
RBM39-238	ENST00000493853	ALK	Q9UM73	1620 aa		11.29	□□□□□ -0.6
RBM39-238	ENST00000493853	ZNF316	A6NFI3	1004 aa	Predicted RBP	11.29	□□□□□ -0.6
RBM39-238	ENST00000493853	C19orf44	Q9H6X5	657 aa		11.29	□□□□□ -0.6
RBM39-238	ENST00000493853	MED1	Q15648	1581 aa	Predicted RBP	11.28	□□□□□ -0.6
RBM39-238	ENST00000493853	RRBP1	Q9P2E9	1410 aa	Known RBP	11.28	□□□□□ -0.6
RBM39-238	ENST00000493853	PIK3R4	Q99570	1358 aa		11.28	□□□□□ -0.6
RBM39-238	ENST00000493853	UPF1	Q92900	1129 aa	Known RBP eCLIP	11.27	□□□□□ -0.61
RBM39-238	ENST00000493853	TMEM131L	A2VDJ0	1609 aa		11.27	□□□□□ -0.61
RBM39-238	ENST00000493853	IQGAP3	Q86VI3	1631 aa		11.27	□□□□□ -0.61
RBM39-238	ENST00000493853	GCC2	Q8IWJ2	1684 aa		11.27	□□□□□ -0.61
RBM39-238	ENST00000493853	NCOA3	Q9Y6Q9	1424 aa		11.26	□□□□□ -0.61
RBM39-238	ENST00000493853		E9PCH4	1651 aa		11.25	□□□□□ -0.61
RBM39-238	ENST00000493853	MFSD10	Q14728	455 aa		11.25	□□□□□ -0.61
RBM39-238	ENST00000493853	LHX6	Q9UPM6	363 aa		11.25	□□□□□ -0.61
RBM39-238	ENST00000493853	NAIP	Q13075	1403 aa		11.25	□□□□□ -0.61
RBM39-238	ENST00000493853	ADAMTS13	Q76LX8	1427 aa		11.25	□□□□□ -0.61
RBM39-238	ENST00000493853	ZNF687	Q8N1G0	1237 aa		11.23	□□□□□ -0.61
RBM39-238	ENST00000493853	OXER1	Q8TDS5	423 aa		11.23	□□□□□ -0.61
RBM39-238	ENST00000493853	NWD1	Q149M9	1564 aa		11.23	□□□□□ -0.61
RBM39-238	ENST00000493853	KRTAP3-3	Q9BYR6	98 aa		11.22	□□□□□ -0.61
RBM39-238	ENST00000493853	KRTAP3-2	Q9BYR7	98 aa		11.22	□□□□□ -0.61
RBM39-238	ENST00000493853	DIP2A	Q14689	1571 aa		11.21	□□□□□ -0.61
RBM39-238	ENST00000493853	TRPM2	O94759	1503 aa		11.21	□□□□□ -0.61
RBM39-238	ENST00000493853	HFM1	A2PYH4	1435 aa		11.21	□□□□□ -0.61
RBM39-238	ENST00000493853	JCAD	Q9P266	1359 aa		11.21	□□□□□ -0.61
RBM39-238	ENST00000493853	RPGRIP1L	Q68CZ1	1315 aa		11.21	□□□□□ -0.61
RBM39-238	ENST00000493853	MEX3C	Q5U5Q3	659 aa	Known RBP	11.21	□□□□□ -0.61
RBM39-238	ENST00000493853	RGS17	Q9UGC6	210 aa	Predicted RBP	11.2	□□□□□ -0.62
RBM39-238	ENST00000493853	PTPRU	Q92729	1446 aa		11.19	□□□□□ -0.62
RBM39-238	ENST00000493853	MET	P08581	1390 aa		11.19	□□□□□ -0.62
RBM39-238	ENST00000493853	XIRP1	Q702N8	1843 aa	Known RBP	11.19	□□□□□ -0.62
RBM39-238	ENST00000493853	ROBO1	Q9Y6N7	1651 aa		11.19	□□□□□ -0.62
RBM39-238	ENST00000493853	RGL3	Q3MIN7	710 aa		11.18	□□□□□ -0.62
RBM39-238	ENST00000493853	BRINP3	Q76B58	766 aa		11.18	□□□□□ -0.62
RBM39-238	ENST00000493853	MYO5B	Q9ULV0	1848 aa		11.18	□□□□□ -0.62
RBM39-238	ENST00000493853	SPATA31A6	Q5VVP1	1343 aa		11.17	□□□□□ -0.62
RBM39-238	ENST00000493853	ACIN1	Q9UKV3	1341 aa	Known RBP	11.17	□□□□□ -0.62
RBM39-238	ENST00000493853	CHD2	O14647	1828 aa	Known RBP	11.17	□□□□□ -0.62
RBM39-238	ENST00000493853	PSD	A5PKW4	1024 aa	Predicted RBP	11.17	□□□□□ -0.62
RBM39-238	ENST00000493853	MAP3K9	P80192	1104 aa		11.17	□□□□□ -0.62
RBM39-238	ENST00000493853	POTEA	Q6S8J7	498 aa		11.17	□□□□□ -0.62
RBM39-238	ENST00000493853	MPHOSPH9	Q99550	1183 aa		11.17	□□□□□ -0.62
RBM39-238	ENST00000493853	NUTM2B	A6NNL0	878 aa	Predicted RBP	11.16	□□□□□ -0.62
RBM39-238	ENST00000493853	NUTM2E	B1AL46	878 aa	Predicted RBP	11.16	□□□□□ -0.62
RBM39-238	ENST00000493853	NUTM2A	Q8IVF1	878 aa	Predicted RBP	11.16	□□□□□ -0.62
RBM39-238	ENST00000493853	SPNS2	Q8IVW8	549 aa		11.16	□□□□□ -0.62
RBM39-238	ENST00000493853	LRRC59	Q96AG4	307 aa	Known RBP	11.16	□□□□□ -0.62
RBM39-238	ENST00000493853	SPHKAP	Q2M3C7	1700 aa		11.15	□□□□□ -0.62
RBM39-238	ENST00000493853	DCC	P43146	1447 aa		11.15	□□□□□ -0.62
RBM39-238	ENST00000493853	SETBP1	Q9Y6X0	1596 aa		11.15	□□□□□ -0.62
RBM39-238	ENST00000493853	ZNF772	Q68DY9	489 aa	Predicted RBP	11.14	□□□□□ -0.63
RBM39-238	ENST00000493853	CCDC144A	A2RUR9	1427 aa		11.14	□□□□□ -0.63
RBM39-238	ENST00000493853	CLTCL1	P53675	1640 aa		11.13	□□□□□ -0.63
RBM39-238	ENST00000493853	EMILIN3	Q9NT22	766 aa		11.13	□□□□□ -0.63
RBM39-238	ENST00000493853	ADGRL3	Q9HAR2	1447 aa		11.12	□□□□□ -0.63
RBM39-238	ENST00000493853	EVI5	O60447	810 aa		11.12	□□□□□ -0.63
RBM39-238	ENST00000493853	PPP4R3B	Q5MIZ7	849 aa		11.12	□□□□□ -0.63
RBM39-238	ENST00000493853	WDR70	Q9NW82	654 aa		11.12	□□□□□ -0.63
RBM39-238	ENST00000493853	STK26	Q9P289	416 aa		11.12	□□□□□ -0.63
RBM39-238	ENST00000493853	NEXMIF	Q5QGS0	1516 aa		11.12	□□□□□ -0.63
RBM39-238	ENST00000493853	PHLPP1	O60346	1717 aa		11.12	□□□□□ -0.63
RBM39-238	ENST00000493853	SIPA1L2	Q9P2F8	1722 aa	Predicted RBP	11.12	□□□□□ -0.63
RBM39-238	ENST00000493853	DDX17	Q92841	729 aa	Known RBP	11.11	□□□□□ -0.63
RBM39-238	ENST00000493853	ADGRF5	Q8IZF2	1346 aa		11.1	□□□□□ -0.63
RBM39-238	ENST00000493853	MST1R	Q04912	1400 aa		11.1	□□□□□ -0.63

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