RNA–Protein interactions for RNA: ENST00000493829.5

USP39-218, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2

Gene USP39, Length 1,660 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-218ENST00000493829 TOM1O60784 492 aa26.47■■□□□ 1.83
USP39-218ENST00000493829 PAK3O75914 559 aaPredicted RBP26.47■■□□□ 1.83
USP39-218ENST00000493829 TTC21BQ7Z4L5 1316 aa26.46■■□□□ 1.83
USP39-218ENST00000493829 TRPM3Q9HCF6 1732 aaPredicted RBP26.46■■□□□ 1.83
USP39-218ENST00000493829 SSH2Q76I76 1423 aa26.46■■□□□ 1.83
USP39-218ENST00000493829 NME9Q86XW9 330 aa26.46■■□□□ 1.83
USP39-218ENST00000493829 NHSL1Q5SYE7 1610 aa26.46■■□□□ 1.83
USP39-218ENST00000493829 ANP32CO43423 234 aa26.45■■□□□ 1.82
USP39-218ENST00000493829 PIK3C2AO00443 1686 aa26.45■■□□□ 1.82
USP39-218ENST00000493829 NPHP3Q7Z494 1330 aa26.45■■□□□ 1.82
USP39-218ENST00000493829 KRT28Q7Z3Y7 464 aa26.44■■□□□ 1.82
USP39-218ENST00000493829 GGNBP2Q9H3C7 697 aa26.44■■□□□ 1.82
USP39-218ENST00000493829 PXDNQ92626 1479 aa26.44■■□□□ 1.82
USP39-218ENST00000493829 ANKRD26Q9UPS8 1709 aa26.43■■□□□ 1.82
USP39-218ENST00000493829 ZRANB1Q9UGI0 708 aa26.43■■□□□ 1.82
USP39-218ENST00000493829 FYB1O15117 783 aa26.41■■□□□ 1.82
USP39-218ENST00000493829 NUTM2GQ5VZR2 741 aa26.4■■□□□ 1.82
USP39-218ENST00000493829 TTC21AQ8NDW8 1320 aa26.4■■□□□ 1.82
USP39-218ENST00000493829 NSD2O96028 1365 aa26.39■■□□□ 1.82
USP39-218ENST00000493829 LMOD2Q6P5Q4 547 aa26.39■■□□□ 1.82
USP39-218ENST00000493829 NPC1L1Q9UHC9 1359 aa26.38■■□□□ 1.81
USP39-218ENST00000493829 MIER1Q8N108 512 aa26.38■■□□□ 1.81
USP39-218ENST00000493829 PRKRIP1Q9H875 184 aaPredicted RBP26.38■■□□□ 1.81
USP39-218ENST00000493829 PLEKHG5O94827 1062 aa26.38■■□□□ 1.81
USP39-218ENST00000493829 TNNT2P45379 298 aaPredicted RBP26.38■■□□□ 1.81
USP39-218ENST00000493829 ALS2Q96Q42 1657 aa26.37■■□□□ 1.81
USP39-218ENST00000493829 AHDC1Q5TGY3 1603 aaPredicted RBP26.37■■□□□ 1.81
USP39-218ENST00000493829 PARD3Q8TEW0 1356 aa26.36■■□□□ 1.81
USP39-218ENST00000493829 MORC1Q86VD1 984 aa26.36■■□□□ 1.81
USP39-218ENST00000493829 ABTB2Q8N961 1025 aa26.36■■□□□ 1.81
USP39-218ENST00000493829 PHLPP1O60346 1717 aa26.36■■□□□ 1.81
USP39-218ENST00000493829 BRD4O60885 1362 aaPredicted RBP26.36■■□□□ 1.81
USP39-218ENST00000493829 MARF1Q9Y4F3 1742 aaKnown RBP26.35■■□□□ 1.81
USP39-218ENST00000493829 TNS3Q68CZ2 1445 aa26.35■■□□□ 1.81
USP39-218ENST00000493829 COG3Q96JB2 828 aa26.34■■□□□ 1.81
USP39-218ENST00000493829 OVOS2A0A0J9YW53 1432 aa26.34■■□□□ 1.81
USP39-218ENST00000493829 OVOS2Q6IE36 1432 aa26.34■■□□□ 1.81
USP39-218ENST00000493829 SOS2Q07890 1332 aaPredicted RBP26.33■■□□□ 1.81
USP39-218ENST00000493829 SBNO1A3KN83 1393 aa26.33■■□□□ 1.81
USP39-218ENST00000493829 NLRP6P59044 892 aa26.32■■□□□ 1.8
USP39-218ENST00000493829 SOX12O15370 315 aa26.31■■□□□ 1.8
USP39-218ENST00000493829 RALBP1Q15311 655 aa26.31■■□□□ 1.8
USP39-218ENST00000493829 USP54Q70EL1 1684 aa26.31■■□□□ 1.8
USP39-218ENST00000493829 SPATA31A3Q5VYP0 1347 aa26.3■■□□□ 1.8
USP39-218ENST00000493829 COL16A1Q07092 1604 aaPredicted RBP26.29■■□□□ 1.8
USP39-218ENST00000493829 USP31Q70CQ4 1352 aa26.28■■□□□ 1.8
USP39-218ENST00000493829 MYBBP1AQ9BQG0 1328 aaKnown RBP26.27■■□□□ 1.8
USP39-218ENST00000493829 FBLN1P23142 703 aa26.26■■□□□ 1.79
USP39-218ENST00000493829 ARHGEF10O15013 1369 aa26.25■■□□□ 1.79
USP39-218ENST00000493829 MED1Q15648 1581 aaPredicted RBP26.24■■□□□ 1.79
USP39-218ENST00000493829 PPP2R1AP30153 589 aa26.24■■□□□ 1.79
USP39-218ENST00000493829 NLRP13Q86W25 1043 aa26.24■■□□□ 1.79
USP39-218ENST00000493829 PHRF1Q9P1Y6 1649 aaKnown RBP26.24■■□□□ 1.79
USP39-218ENST00000493829 CRYBG1Q9Y4K1 1723 aa26.22■■□□□ 1.79
USP39-218ENST00000493829 CABLES1Q8TDN4 633 aa26.22■■□□□ 1.79
USP39-218ENST00000493829 SLIT3O75094 1523 aa26.21■■□□□ 1.79
USP39-218ENST00000493829 ABCA3Q99758 1704 aa26.2■■□□□ 1.78
USP39-218ENST00000493829 USP19O94966 1318 aa26.19■■□□□ 1.78
USP39-218ENST00000493829 LRRC59Q96AG4 307 aaKnown RBP26.19■■□□□ 1.78
USP39-218ENST00000493829 RRS1Q15050 365 aaKnown RBP26.19■■□□□ 1.78
USP39-218ENST00000493829 CCDC184Q52MB2 194 aa26.19■■□□□ 1.78
USP39-218ENST00000493829 NFAT5O94916 1531 aa26.18■■□□□ 1.78
USP39-218ENST00000493829 MAP2P11137 1827 aaKnown RBP26.17■■□□□ 1.78
USP39-218ENST00000493829 ZBTB7CA1YPR0 619 aa26.16■■□□□ 1.78
USP39-218ENST00000493829 PPM1GO15355 546 aaPredicted RBP26.16■■□□□ 1.78
USP39-218ENST00000493829 PNPLA6Q8IY17 1366 aa26.16■■□□□ 1.78
USP39-218ENST00000493829 LTN1O94822 1766 aa26.16■■□□□ 1.78
USP39-218ENST00000493829 EMILIN1Q9Y6C2 1016 aa26.15■■□□□ 1.78
USP39-218ENST00000493829 AATKQ6ZMQ8 1374 aa26.14■■□□□ 1.78
USP39-218ENST00000493829 COL22A1Q8NFW1 1626 aaPredicted RBP26.14■■□□□ 1.78
USP39-218ENST00000493829 MTHFSP49914 203 aa26.14■■□□□ 1.78
USP39-218ENST00000493829 PEAK1Q9H792 1746 aa26.14■■□□□ 1.78
USP39-218ENST00000493829 MRS2Q9HD23 443 aa26.14■■□□□ 1.78
USP39-218ENST00000493829 GCP02774 474 aa26.13■■□□□ 1.77
USP39-218ENST00000493829 HSPA1LP34931 641 aa26.13■■□□□ 1.77
USP39-218ENST00000493829 HAP1P54257 671 aaPredicted RBP26.13■■□□□ 1.77
USP39-218ENST00000493829 KCNH5Q8NCM2 988 aa26.12■■□□□ 1.77
USP39-218ENST00000493829 POLKQ9UBT6 870 aa26.12■■□□□ 1.77
USP39-218ENST00000493829 MAP3K19Q56UN5 1328 aa26.11■■□□□ 1.77
USP39-218ENST00000493829 SMG6Q86US8 1419 aaKnown RBP26.11■■□□□ 1.77
USP39-218ENST00000493829 CCER2I3L3R5 266 aa26.1■■□□□ 1.77
USP39-218ENST00000493829 ZC3H6P61129 1189 aaKnown RBP26.1■■□□□ 1.77
USP39-218ENST00000493829 SHPRHQ149N8 1683 aa26.1■■□□□ 1.77
USP39-218ENST00000493829 CDK12Q9NYV4 1490 aaPredicted RBP26.08■■□□□ 1.76
USP39-218ENST00000493829 AMPHP49418 695 aa26.06■■□□□ 1.76
USP39-218ENST00000493829 KIAA0232Q92628 1395 aa26.05■■□□□ 1.76
USP39-218ENST00000493829 JCADQ9P266 1359 aa26.05■■□□□ 1.76
USP39-218ENST00000493829 COL3A1P02461 1466 aaPredicted RBP26.04■■□□□ 1.76
USP39-218ENST00000493829 CFAP53Q96M91 514 aa26.04■■□□□ 1.76
USP39-218ENST00000493829 NUTM2BA6NNL0 878 aaPredicted RBP26.03■■□□□ 1.76
USP39-218ENST00000493829 NUTM2EB1AL46 878 aaPredicted RBP26.03■■□□□ 1.76
USP39-218ENST00000493829 NUTM2AQ8IVF1 878 aaPredicted RBP26.03■■□□□ 1.76
USP39-218ENST00000493829 FLT4P35916 1363 aa26.02■■□□□ 1.76
USP39-218ENST00000493829 CHRNA2Q15822 529 aa26.02■■□□□ 1.76
USP39-218ENST00000493829 ARHGEF25Q86VW2 580 aa26.02■■□□□ 1.76
USP39-218ENST00000493829 RTL1A6NKG5 1358 aa26■■□□□ 1.75
USP39-218ENST00000493829 HOXC9P31274 260 aa26■■□□□ 1.75
USP39-218ENST00000493829 HSP90AB2PQ58FF8 381 aa26■■□□□ 1.75
USP39-218ENST00000493829 PRDM11Q9NQV5 511 aa25.99■■□□□ 1.75
USP39-218ENST00000493829 RGPD5Q99666 1765 aa25.98■■□□□ 1.75
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms