RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 CENPQQ7L2Z9 268 aaPredicted RBP13.41□□□□□ -0.26
MSH5-SAPCD1-207ENST00000493662 TSPYL4Q9UJ04 414 aa13.41□□□□□ -0.26
MSH5-SAPCD1-207ENST00000493662 ADGBQ8N7X0 1667 aa13.41□□□□□ -0.26
MSH5-SAPCD1-207ENST00000493662 ABCC1P33527 1531 aa13.41□□□□□ -0.26
MSH5-SAPCD1-207ENST00000493662 HSPA2P54652 639 aa13.4□□□□□ -0.26
MSH5-SAPCD1-207ENST00000493662 KRT24Q2M2I5 525 aa13.4□□□□□ -0.26
MSH5-SAPCD1-207ENST00000493662 STK31Q9BXU1 1019 aa13.4□□□□□ -0.26
MSH5-SAPCD1-207ENST00000493662 ACEP12821 1306 aa13.4□□□□□ -0.26
MSH5-SAPCD1-207ENST00000493662 LTKP29376 864 aa13.4□□□□□ -0.26
MSH5-SAPCD1-207ENST00000493662 PHACTR3Q96KR7 559 aa13.4□□□□□ -0.26
MSH5-SAPCD1-207ENST00000493662 MAGI2Q86UL8 1455 aa13.4□□□□□ -0.26
MSH5-SAPCD1-207ENST00000493662 ARHGEF5Q12774 1597 aa13.4□□□□□ -0.26
MSH5-SAPCD1-207ENST00000493662 SSH1Q8WYL5 1049 aa13.4□□□□□ -0.26
MSH5-SAPCD1-207ENST00000493662 NLRP2Q9NX02 1062 aa13.4□□□□□ -0.26
MSH5-SAPCD1-207ENST00000493662 A0A1W2PP64 1363 aa13.4□□□□□ -0.26
MSH5-SAPCD1-207ENST00000493662 FAM161AQ3B820 660 aa13.39□□□□□ -0.27
MSH5-SAPCD1-207ENST00000493662 COL17A1Q9UMD9 1497 aaPredicted RBP13.39□□□□□ -0.27
MSH5-SAPCD1-207ENST00000493662 ATAD2Q6PL18 1390 aa13.39□□□□□ -0.27
MSH5-SAPCD1-207ENST00000493662 NOL8Q76FK4 1167 aaKnown RBP13.39□□□□□ -0.27
MSH5-SAPCD1-207ENST00000493662 ANKLE2Q86XL3 938 aa13.39□□□□□ -0.27
MSH5-SAPCD1-207ENST00000493662 FAM13BQ9NYF5 915 aa13.39□□□□□ -0.27
MSH5-SAPCD1-207ENST00000493662 FKBP5Q13451 457 aaPredicted RBP13.38□□□□□ -0.27
MSH5-SAPCD1-207ENST00000493662 TWISTNBQ3B726 338 aaPredicted RBP13.38□□□□□ -0.27
MSH5-SAPCD1-207ENST00000493662 BCORL1Q5H9F3 1711 aa13.38□□□□□ -0.27
MSH5-SAPCD1-207ENST00000493662 KCNA6P17658 529 aa13.37□□□□□ -0.27
MSH5-SAPCD1-207ENST00000493662 AIMP1Q12904 312 aaKnown RBP13.37□□□□□ -0.27
MSH5-SAPCD1-207ENST00000493662 RARSP54136 660 aaKnown RBP13.37□□□□□ -0.27
MSH5-SAPCD1-207ENST00000493662 TEFQ10587 303 aa13.37□□□□□ -0.27
MSH5-SAPCD1-207ENST00000493662 POLKQ9UBT6 870 aa13.37□□□□□ -0.27
MSH5-SAPCD1-207ENST00000493662 PRDM15P57071 1507 aaPredicted RBP13.37□□□□□ -0.27
MSH5-SAPCD1-207ENST00000493662 POLR1AO95602 1720 aaPredicted RBP13.37□□□□□ -0.27
MSH5-SAPCD1-207ENST00000493662 TNRQ92752 1358 aa13.37□□□□□ -0.27
MSH5-SAPCD1-207ENST00000493662 ADCY10Q96PN6 1610 aa13.37□□□□□ -0.27
MSH5-SAPCD1-207ENST00000493662 CALD1Q05682 793 aaKnown RBP13.37□□□□□ -0.27
MSH5-SAPCD1-207ENST00000493662 RIMS2Q9UQ26 1411 aa13.37□□□□□ -0.27
MSH5-SAPCD1-207ENST00000493662 UHRF1BP1LA0JNW5 1464 aa13.36□□□□□ -0.27
MSH5-SAPCD1-207ENST00000493662 RLBP1P12271 317 aa13.35□□□□□ -0.27
MSH5-SAPCD1-207ENST00000493662 IGHDP01880 384 aa13.35□□□□□ -0.27
MSH5-SAPCD1-207ENST00000493662 TMEM57Q8N5G2 664 aa13.35□□□□□ -0.27
MSH5-SAPCD1-207ENST00000493662 GPRASP1Q5JY77 1395 aa13.35□□□□□ -0.27
MSH5-SAPCD1-207ENST00000493662 ATF3P18847 181 aa13.35□□□□□ -0.27
MSH5-SAPCD1-207ENST00000493662 PDZRN3Q9UPQ7 1066 aa13.34□□□□□ -0.27
MSH5-SAPCD1-207ENST00000493662 SLC4A2P04920 1241 aa13.34□□□□□ -0.27
MSH5-SAPCD1-207ENST00000493662 GNAI1P63096 354 aa13.34□□□□□ -0.27
MSH5-SAPCD1-207ENST00000493662 LMOD3Q0VAK6 560 aa13.34□□□□□ -0.27
MSH5-SAPCD1-207ENST00000493662 DDX17Q92841 729 aaKnown RBP13.34□□□□□ -0.27
MSH5-SAPCD1-207ENST00000493662 CHMP3Q9Y3E7 222 aa13.34□□□□□ -0.27
MSH5-SAPCD1-207ENST00000493662 KDM5CP41229 1560 aa13.34□□□□□ -0.27
MSH5-SAPCD1-207ENST00000493662 ZFYVE16Q7Z3T8 1539 aa13.33□□□□□ -0.28
MSH5-SAPCD1-207ENST00000493662 F6X3S4 739 aa13.33□□□□□ -0.28
MSH5-SAPCD1-207ENST00000493662 TSPYL6Q8N831 410 aa13.33□□□□□ -0.28
MSH5-SAPCD1-207ENST00000493662 ASXL1Q8IXJ9 1541 aa13.33□□□□□ -0.28
MSH5-SAPCD1-207ENST00000493662 HSCBQ8IWL3 235 aa13.33□□□□□ -0.28
MSH5-SAPCD1-207ENST00000493662 CABLES1Q8TDN4 633 aa13.32□□□□□ -0.28
MSH5-SAPCD1-207ENST00000493662 SYTL4Q96C24 671 aaPredicted RBP13.32□□□□□ -0.28
MSH5-SAPCD1-207ENST00000493662 STRN4Q9NRL3 753 aa13.32□□□□□ -0.28
MSH5-SAPCD1-207ENST00000493662 TRIM6-TRIM34B2RNG4 842 aa13.32□□□□□ -0.28
MSH5-SAPCD1-207ENST00000493662 ANXA1P04083 346 aa13.32□□□□□ -0.28
MSH5-SAPCD1-207ENST00000493662 ZNF692Q9BU19 519 aaPredicted RBP13.32□□□□□ -0.28
MSH5-SAPCD1-207ENST00000493662 YTHDC2Q9H6S0 1430 aaKnown RBP13.32□□□□□ -0.28
MSH5-SAPCD1-207ENST00000493662 HSP90AB1P08238 724 aaKnown RBP13.31□□□□□ -0.28
MSH5-SAPCD1-207ENST00000493662 DDX19BQ9UMR2 479 aa13.31□□□□□ -0.28
MSH5-SAPCD1-207ENST00000493662 KDM5DQ9BY66 1539 aa13.31□□□□□ -0.28
MSH5-SAPCD1-207ENST00000493662 FCHSD2O94868 740 aa13.31□□□□□ -0.28
MSH5-SAPCD1-207ENST00000493662 ATF7IPQ6VMQ6 1270 aa13.31□□□□□ -0.28
MSH5-SAPCD1-207ENST00000493662 C1orf141Q5JVX7 400 aa13.31□□□□□ -0.28
MSH5-SAPCD1-207ENST00000493662 ANKRD36BQ8N2N9 1353 aa13.31□□□□□ -0.28
MSH5-SAPCD1-207ENST00000493662 TRIM27P14373 513 aa13.3□□□□□ -0.28
MSH5-SAPCD1-207ENST00000493662 NFE2L2Q16236 605 aa13.3□□□□□ -0.28
MSH5-SAPCD1-207ENST00000493662 METP08581 1390 aa13.3□□□□□ -0.28
MSH5-SAPCD1-207ENST00000493662 PPIP5K1Q6PFW1 1433 aa13.3□□□□□ -0.28
MSH5-SAPCD1-207ENST00000493662 CHRNA2Q15822 529 aa13.3□□□□□ -0.28
MSH5-SAPCD1-207ENST00000493662 FOXD4L5Q5VV16 416 aaPredicted RBP13.3□□□□□ -0.28
MSH5-SAPCD1-207ENST00000493662 FOXD4L4Q8WXT5 416 aaPredicted RBP13.3□□□□□ -0.28
MSH5-SAPCD1-207ENST00000493662 WDR63Q8IWG1 891 aa13.3□□□□□ -0.28
MSH5-SAPCD1-207ENST00000493662 LRPPRCP42704 1394 aaKnown RBP13.3□□□□□ -0.28
MSH5-SAPCD1-207ENST00000493662 PCDHB15Q9Y5E8 787 aa13.29□□□□□ -0.28
MSH5-SAPCD1-207ENST00000493662 CLASP1Q7Z460 1538 aa13.29□□□□□ -0.28
MSH5-SAPCD1-207ENST00000493662 RBM10P98175 930 aaKnown RBP13.29□□□□□ -0.28
MSH5-SAPCD1-207ENST00000493662 RILPL2Q969X0 211 aa13.29□□□□□ -0.28
MSH5-SAPCD1-207ENST00000493662 PTPRTO14522 1441 aa13.29□□□□□ -0.28
MSH5-SAPCD1-207ENST00000493662 LRRC59Q96AG4 307 aaKnown RBP13.29□□□□□ -0.28
MSH5-SAPCD1-207ENST00000493662 PHF8Q9UPP1 1060 aa13.29□□□□□ -0.28
MSH5-SAPCD1-207ENST00000493662 TPM2P07951 284 aa13.28□□□□□ -0.28
MSH5-SAPCD1-207ENST00000493662 FOXD4L6Q3SYB3 417 aaPredicted RBP13.28□□□□□ -0.28
MSH5-SAPCD1-207ENST00000493662 FOXD4L3Q6VB84 417 aaPredicted RBP13.28□□□□□ -0.28
MSH5-SAPCD1-207ENST00000493662 MPRIPQ6WCQ1 1025 aa13.28□□□□□ -0.28
MSH5-SAPCD1-207ENST00000493662 GBP4Q96PP9 640 aa13.28□□□□□ -0.28
MSH5-SAPCD1-207ENST00000493662 TTC21BQ7Z4L5 1316 aa13.28□□□□□ -0.28
MSH5-SAPCD1-207ENST00000493662 KAT6BQ8WYB5 2073 aa13.27□□□□□ -0.28
MSH5-SAPCD1-207ENST00000493662 EVA1CP58658 441 aa13.27□□□□□ -0.28
MSH5-SAPCD1-207ENST00000493662 MVPQ14764 893 aaKnown RBP13.27□□□□□ -0.28
MSH5-SAPCD1-207ENST00000493662 ORAI2Q96SN7 254 aa13.27□□□□□ -0.28
MSH5-SAPCD1-207ENST00000493662 C8orf58Q8NAV2 365 aa13.27□□□□□ -0.29
MSH5-SAPCD1-207ENST00000493662 MBIPQ9NS73 344 aa13.27□□□□□ -0.29
MSH5-SAPCD1-207ENST00000493662 EIF4A2Q14240 407 aaKnown RBP13.27□□□□□ -0.29
MSH5-SAPCD1-207ENST00000493662 ZNF530Q6P9A1 599 aaPredicted RBP13.27□□□□□ -0.29
MSH5-SAPCD1-207ENST00000493662 ERVK-7P63135 1459 aa13.26□□□□□ -0.29
MSH5-SAPCD1-207ENST00000493662 MRE11P49959 708 aa13.26□□□□□ -0.29
MSH5-SAPCD1-207ENST00000493662 PDE3AQ14432 1141 aa13.26□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms