RNA–Protein interactions for RNA: ENST00000493660.5

SMARCE1-211, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1, humanhuman

TSL 3

Gene SMARCE1, Length 2,284 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCE1-211ENST00000493660 CARD14Q9BXL6 1004 aa9.65□□□□□ -0.87
SMARCE1-211ENST00000493660 ZMYND15Q9H091 742 aa9.65□□□□□ -0.87
SMARCE1-211ENST00000493660 CCDC61Q9Y6R9 512 aa9.65□□□□□ -0.87
SMARCE1-211ENST00000493660 CGNL1Q0VF96 1302 aa9.64□□□□□ -0.87
SMARCE1-211ENST00000493660 XIRP1Q702N8 1843 aaKnown RBP9.64□□□□□ -0.87
SMARCE1-211ENST00000493660 RSPH6AQ9H0K4 717 aa9.64□□□□□ -0.87
SMARCE1-211ENST00000493660 DCCP43146 1447 aa9.64□□□□□ -0.87
SMARCE1-211ENST00000493660 PDIA4P13667 645 aaKnown RBP9.63□□□□□ -0.87
SMARCE1-211ENST00000493660 EDC4Q6P2E9 1401 aaKnown RBP9.63□□□□□ -0.87
SMARCE1-211ENST00000493660 PRR36Q9H6K5 1346 aa9.63□□□□□ -0.87
SMARCE1-211ENST00000493660 KIF1AQ12756 1690 aa9.63□□□□□ -0.87
SMARCE1-211ENST00000493660 PLEKHG3A1L390 1219 aa9.63□□□□□ -0.87
SMARCE1-211ENST00000493660 FGD1P98174 961 aa9.62□□□□□ -0.87
SMARCE1-211ENST00000493660 FKBP8Q14318 412 aa9.62□□□□□ -0.87
SMARCE1-211ENST00000493660 CABP1Q9NZU7 370 aa9.62□□□□□ -0.87
SMARCE1-211ENST00000493660 DMRT2Q9Y5R5 561 aa9.62□□□□□ -0.87
SMARCE1-211ENST00000493660 USP54Q70EL1 1684 aa9.62□□□□□ -0.87
SMARCE1-211ENST00000493660 NLRP13Q86W25 1043 aa9.62□□□□□ -0.87
SMARCE1-211ENST00000493660 ZNF692Q9BU19 519 aaPredicted RBP9.62□□□□□ -0.87
SMARCE1-211ENST00000493660 CC2D1BQ5T0F9 858 aaKnown RBP9.61□□□□□ -0.87
SMARCE1-211ENST00000493660 RTN4Q9NQC3 1192 aaKnown RBP9.61□□□□□ -0.87
SMARCE1-211ENST00000493660 POLR3AO14802 1390 aaPredicted RBP9.61□□□□□ -0.87
SMARCE1-211ENST00000493660 PROSER2Q86WR7 435 aaPredicted RBP9.61□□□□□ -0.87
SMARCE1-211ENST00000493660 NCBP3Q53F19 620 aaKnown RBP9.6□□□□□ -0.87
SMARCE1-211ENST00000493660 RTL5Q5HYW3 569 aaPredicted RBP9.6□□□□□ -0.87
SMARCE1-211ENST00000493660 MRS2Q9HD23 443 aa9.59□□□□□ -0.87
SMARCE1-211ENST00000493660 USP6P35125 1406 aa9.59□□□□□ -0.87
SMARCE1-211ENST00000493660 LRRC7Q96NW7 1537 aa9.59□□□□□ -0.87
SMARCE1-211ENST00000493660 INSRP06213 1382 aa9.58□□□□□ -0.88
SMARCE1-211ENST00000493660 TMEM94Q12767 1356 aa9.58□□□□□ -0.88
SMARCE1-211ENST00000493660 SSH2Q76I76 1423 aa9.58□□□□□ -0.88
SMARCE1-211ENST00000493660 PPP2R1AP30153 589 aa9.58□□□□□ -0.88
SMARCE1-211ENST00000493660 C19orf44Q9H6X5 657 aa9.58□□□□□ -0.88
SMARCE1-211ENST00000493660 NOP58Q9Y2X3 529 aaKnown RBP9.58□□□□□ -0.88
SMARCE1-211ENST00000493660 ACEP12821 1306 aa9.57□□□□□ -0.88
SMARCE1-211ENST00000493660 MORC1Q86VD1 984 aa9.57□□□□□ -0.88
SMARCE1-211ENST00000493660 TTC21AQ8NDW8 1320 aa9.57□□□□□ -0.88
SMARCE1-211ENST00000493660 AAMPQ13685 434 aa9.57□□□□□ -0.88
SMARCE1-211ENST00000493660 CCDC184Q52MB2 194 aa9.57□□□□□ -0.88
SMARCE1-211ENST00000493660 C14orf37Q86TY3 774 aa9.57□□□□□ -0.88
SMARCE1-211ENST00000493660 VSIG10Q8N0Z9 540 aa9.57□□□□□ -0.88
SMARCE1-211ENST00000493660 FYB1O15117 783 aa9.56□□□□□ -0.88
SMARCE1-211ENST00000493660 PIK3C2AO00443 1686 aa9.56□□□□□ -0.88
SMARCE1-211ENST00000493660 MST1RQ04912 1400 aa9.56□□□□□ -0.88
SMARCE1-211ENST00000493660 MSH6P52701 1360 aa9.56□□□□□ -0.88
SMARCE1-211ENST00000493660 CNGB1Q14028 1251 aaPredicted RBP9.56□□□□□ -0.88
SMARCE1-211ENST00000493660 MAP2P11137 1827 aaKnown RBP9.55□□□□□ -0.88
SMARCE1-211ENST00000493660 C1orf167Q5SNV9 1468 aa9.55□□□□□ -0.88
SMARCE1-211ENST00000493660 TRPM3Q9HCF6 1732 aaPredicted RBP9.55□□□□□ -0.88
SMARCE1-211ENST00000493660 MARF1Q9Y4F3 1742 aaKnown RBP9.55□□□□□ -0.88
SMARCE1-211ENST00000493660 SHPRHQ149N8 1683 aa9.55□□□□□ -0.88
SMARCE1-211ENST00000493660 TTC21BQ7Z4L5 1316 aa9.55□□□□□ -0.88
SMARCE1-211ENST00000493660 PNISRQ8TF01 805 aaKnown RBP9.54□□□□□ -0.88
SMARCE1-211ENST00000493660 ARXQ96QS3 562 aa9.54□□□□□ -0.88
SMARCE1-211ENST00000493660 PHF8Q9UPP1 1060 aa9.54□□□□□ -0.88
SMARCE1-211ENST00000493660 OVOS2A0A0J9YW53 1432 aa9.54□□□□□ -0.88
SMARCE1-211ENST00000493660 OVOS2Q6IE36 1432 aa9.54□□□□□ -0.88
SMARCE1-211ENST00000493660 USP31Q70CQ4 1352 aa9.54□□□□□ -0.88
SMARCE1-211ENST00000493660 NUTM2FA1L443 756 aa9.54□□□□□ -0.88
SMARCE1-211ENST00000493660 CADPS2Q86UW7 1296 aa9.54□□□□□ -0.88
SMARCE1-211ENST00000493660 NGDNQ8NEJ9 315 aaKnown RBP9.54□□□□□ -0.88
SMARCE1-211ENST00000493660 SMG6Q86US8 1419 aaKnown RBP9.54□□□□□ -0.88
SMARCE1-211ENST00000493660 AATKQ6ZMQ8 1374 aa9.54□□□□□ -0.88
SMARCE1-211ENST00000493660 ZNF335Q9H4Z2 1342 aaPredicted RBP9.53□□□□□ -0.88
SMARCE1-211ENST00000493660 ATF3P18847 181 aa9.53□□□□□ -0.88
SMARCE1-211ENST00000493660 NBR1Q14596 966 aa9.53□□□□□ -0.88
SMARCE1-211ENST00000493660 GGNBP2Q9H3C7 697 aa9.53□□□□□ -0.88
SMARCE1-211ENST00000493660 LTBP4Q8N2S1 1624 aa9.52□□□□□ -0.88
SMARCE1-211ENST00000493660 PMFBP1Q8TBY8 1022 aa9.52□□□□□ -0.89
SMARCE1-211ENST00000493660 RBM33Q96EV2 1170 aaKnown RBP9.52□□□□□ -0.89
SMARCE1-211ENST00000493660 ALS2Q96Q42 1657 aa9.52□□□□□ -0.89
SMARCE1-211ENST00000493660 RBM10P98175 930 aaKnown RBP9.52□□□□□ -0.89
SMARCE1-211ENST00000493660 SUGP2Q8IX01 1082 aaKnown RBP eCLIP9.52□□□□□ -0.89
SMARCE1-211ENST00000493660 COG3Q96JB2 828 aa9.52□□□□□ -0.89
SMARCE1-211ENST00000493660 BLMP54132 1417 aaPredicted RBP9.51□□□□□ -0.89
SMARCE1-211ENST00000493660 NME9Q86XW9 330 aa9.51□□□□□ -0.89
SMARCE1-211ENST00000493660 CFAP53Q96M91 514 aa9.51□□□□□ -0.89
SMARCE1-211ENST00000493660 COL3A1P02461 1466 aaPredicted RBP9.51□□□□□ -0.89
SMARCE1-211ENST00000493660 CDK12Q9NYV4 1490 aaPredicted RBP9.51□□□□□ -0.89
SMARCE1-211ENST00000493660 ESCO1Q5FWF5 840 aa9.51□□□□□ -0.89
SMARCE1-211ENST00000493660 FAM9BQ8IZU0 186 aa9.51□□□□□ -0.89
SMARCE1-211ENST00000493660 PHRF1Q9P1Y6 1649 aaKnown RBP9.5□□□□□ -0.89
SMARCE1-211ENST00000493660 PNPLA6Q8IY17 1366 aa9.49□□□□□ -0.89
SMARCE1-211ENST00000493660 TAF7LQ5H9L4 462 aa9.49□□□□□ -0.89
SMARCE1-211ENST00000493660 NHSL1Q5SYE7 1610 aa9.49□□□□□ -0.89
SMARCE1-211ENST00000493660 A0A0U1RQG5 324 aaPredicted RBP9.49□□□□□ -0.89
SMARCE1-211ENST00000493660 MTHFSP49914 203 aa9.49□□□□□ -0.89
SMARCE1-211ENST00000493660 SLIT3O75094 1523 aa9.48□□□□□ -0.89
SMARCE1-211ENST00000493660 WDR43Q15061 677 aaKnown RBP eCLIP9.48□□□□□ -0.89
SMARCE1-211ENST00000493660 SBNO1A3KN83 1393 aa9.48□□□□□ -0.89
SMARCE1-211ENST00000493660 PSME1Q06323 249 aa9.48□□□□□ -0.89
SMARCE1-211ENST00000493660 ORAI2Q96SN7 254 aa9.48□□□□□ -0.89
SMARCE1-211ENST00000493660 LTN1O94822 1766 aa9.48□□□□□ -0.89
SMARCE1-211ENST00000493660 KIF24Q5T7B8 1368 aa9.47□□□□□ -0.89
SMARCE1-211ENST00000493660 TNNT2P45379 298 aaPredicted RBP9.47□□□□□ -0.89
SMARCE1-211ENST00000493660 PXDNQ92626 1479 aa9.47□□□□□ -0.89
SMARCE1-211ENST00000493660 PEAK1Q9H792 1746 aa9.47□□□□□ -0.89
SMARCE1-211ENST00000493660 CRYBG1Q9Y4K1 1723 aa9.47□□□□□ -0.89
SMARCE1-211ENST00000493660 MED1Q15648 1581 aaPredicted RBP9.47□□□□□ -0.89
SMARCE1-211ENST00000493660 HNRNPUQ00839 825 aaKnown RBP eCLIP9.47□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms