RNA–Protein interactions for RNA: ENST00000493177.1

MSH6-208, Transcript of mutS homolog 6, humanhuman

TSL 3

Gene MSH6, Length 813 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-208ENST00000493177 CABLES1Q8TDN4 633 aa18.75■□□□□ 0.59
MSH6-208ENST00000493177 CCDC61Q9Y6R9 512 aa18.74■□□□□ 0.59
MSH6-208ENST00000493177 PLCH1Q4KWH8 1693 aa18.73■□□□□ 0.59
MSH6-208ENST00000493177 TNKS1BP1Q9C0C2 1729 aaKnown RBP18.73■□□□□ 0.59
MSH6-208ENST00000493177 CDK12Q9NYV4 1490 aaPredicted RBP18.72■□□□□ 0.59
MSH6-208ENST00000493177 FNBP4Q8N3X1 1017 aaPredicted RBP18.72■□□□□ 0.59
MSH6-208ENST00000493177 CABP2Q9NPB3 220 aa18.72■□□□□ 0.59
MSH6-208ENST00000493177 PPIP5K1Q6PFW1 1433 aa18.72■□□□□ 0.59
MSH6-208ENST00000493177 EVC2Q86UK5 1308 aa18.72■□□□□ 0.59
MSH6-208ENST00000493177 ACEP12821 1306 aa18.71■□□□□ 0.59
MSH6-208ENST00000493177 NWD2Q9ULI1 1742 aa18.69■□□□□ 0.58
MSH6-208ENST00000493177 RGS12O14924 1447 aa18.69■□□□□ 0.58
MSH6-208ENST00000493177 ZNF316A6NFI3 1004 aaPredicted RBP18.69■□□□□ 0.58
MSH6-208ENST00000493177 ATRNO75882 1429 aa18.68■□□□□ 0.58
MSH6-208ENST00000493177 CCDC9Q9Y3X0 531 aaKnown RBP18.68■□□□□ 0.58
MSH6-208ENST00000493177 TMF1P82094 1093 aa18.67■□□□□ 0.58
MSH6-208ENST00000493177 UNC5CLQ8IV45 518 aa18.67■□□□□ 0.58
MSH6-208ENST00000493177 TESK2Q96S53 571 aa18.67■□□□□ 0.58
MSH6-208ENST00000493177 POLR3GLQ9BT43 218 aa18.67■□□□□ 0.58
MSH6-208ENST00000493177 POLR3AO14802 1390 aaPredicted RBP18.67■□□□□ 0.58
MSH6-208ENST00000493177 PHRF1Q9P1Y6 1649 aaKnown RBP18.67■□□□□ 0.58
MSH6-208ENST00000493177 CRYBG1Q9Y4K1 1723 aa18.66■□□□□ 0.58
MSH6-208ENST00000493177 BCL9LQ86UU0 1499 aa18.66■□□□□ 0.58
MSH6-208ENST00000493177 COL14A1Q05707 1796 aaKnown RBP18.66■□□□□ 0.58
MSH6-208ENST00000493177 PLEKHG3A1L390 1219 aa18.66■□□□□ 0.58
MSH6-208ENST00000493177 SLC24A1O60721 1099 aa18.66■□□□□ 0.58
MSH6-208ENST00000493177 SLIT2O94813 1529 aa18.65■□□□□ 0.58
MSH6-208ENST00000493177 NUTM2GQ5VZR2 741 aa18.65■□□□□ 0.58
MSH6-208ENST00000493177 ABTB2Q8N961 1025 aa18.64■□□□□ 0.57
MSH6-208ENST00000493177 GJD4Q96KN9 370 aaPredicted RBP18.64■□□□□ 0.57
MSH6-208ENST00000493177 SBNO2Q9Y2G9 1366 aa18.64■□□□□ 0.57
MSH6-208ENST00000493177 CABP1Q9NZU7 370 aa18.63■□□□□ 0.57
MSH6-208ENST00000493177 PRDM11Q9NQV5 511 aa18.62■□□□□ 0.57
MSH6-208ENST00000493177 CDCA8Q53HL2 280 aa18.61■□□□□ 0.57
MSH6-208ENST00000493177 AKAP12Q02952 1782 aa18.6■□□□□ 0.57
MSH6-208ENST00000493177 NRAPQ86VF7 1730 aa18.6■□□□□ 0.57
MSH6-208ENST00000493177 ATAD2Q6PL18 1390 aa18.6■□□□□ 0.57
MSH6-208ENST00000493177 A0A0G2JS52 829 aa18.6■□□□□ 0.57
MSH6-208ENST00000493177 FAM83GA6ND36 823 aa18.6■□□□□ 0.57
MSH6-208ENST00000493177 C11orf95C9JLR9 678 aaPredicted RBP18.6■□□□□ 0.57
MSH6-208ENST00000493177 MYT1Q01538 1121 aa18.6■□□□□ 0.57
MSH6-208ENST00000493177 BTG4Q9NY30 223 aa18.6■□□□□ 0.57
MSH6-208ENST00000493177 GLI3P10071 1580 aa18.59■□□□□ 0.57
MSH6-208ENST00000493177 USP6P35125 1406 aa18.58■□□□□ 0.57
MSH6-208ENST00000493177 BRD4O60885 1362 aaPredicted RBP18.58■□□□□ 0.57
MSH6-208ENST00000493177 KIF7Q2M1P5 1343 aa18.58■□□□□ 0.57
MSH6-208ENST00000493177 VPS72Q15906 364 aa18.58■□□□□ 0.56
MSH6-208ENST00000493177 NLRP13Q86W25 1043 aa18.58■□□□□ 0.56
MSH6-208ENST00000493177 UPF1Q92900 1129 aaKnown RBP eCLIP18.58■□□□□ 0.56
MSH6-208ENST00000493177 CCDC7Q96M83 1385 aa18.57■□□□□ 0.56
MSH6-208ENST00000493177 NRKQ7Z2Y5 1582 aa18.57■□□□□ 0.56
MSH6-208ENST00000493177 ZC3H6P61129 1189 aaKnown RBP18.57■□□□□ 0.56
MSH6-208ENST00000493177 KIAA0232Q92628 1395 aa18.56■□□□□ 0.56
MSH6-208ENST00000493177 BRWD3Q6RI45 1802 aa18.56■□□□□ 0.56
MSH6-208ENST00000493177 WASHC2AQ641Q2 1341 aa18.56■□□□□ 0.56
MSH6-208ENST00000493177 ZBTB7CA1YPR0 619 aa18.56■□□□□ 0.56
MSH6-208ENST00000493177 TMC1Q8TDI8 760 aa18.56■□□□□ 0.56
MSH6-208ENST00000493177 CHRNA2Q15822 529 aa18.55■□□□□ 0.56
MSH6-208ENST00000493177 NLRP6P59044 892 aa18.54■□□□□ 0.56
MSH6-208ENST00000493177 ZNF692Q9BU19 519 aaPredicted RBP18.54■□□□□ 0.56
MSH6-208ENST00000493177 STRN4Q9NRL3 753 aa18.54■□□□□ 0.56
MSH6-208ENST00000493177 MON2Q7Z3U7 1717 aa18.53■□□□□ 0.56
MSH6-208ENST00000493177 PIK3C2AO00443 1686 aa18.53■□□□□ 0.56
MSH6-208ENST00000493177 KTN1Q86UP2 1357 aaKnown RBP18.53■□□□□ 0.56
MSH6-208ENST00000493177 EVA1CP58658 441 aa18.52■□□□□ 0.56
MSH6-208ENST00000493177 PUS7Q96PZ0 661 aaKnown RBP18.51■□□□□ 0.55
MSH6-208ENST00000493177 USP19O94966 1318 aa18.5■□□□□ 0.55
MSH6-208ENST00000493177 HDGFL2Q7Z4V5 671 aaPredicted RBP18.5■□□□□ 0.55
MSH6-208ENST00000493177 SEPT12Q8IYM1 358 aa18.5■□□□□ 0.55
MSH6-208ENST00000493177 GCP02774 474 aa18.49■□□□□ 0.55
MSH6-208ENST00000493177 FAM98CQ17RN3 349 aaKnown RBP18.49■□□□□ 0.55
MSH6-208ENST00000493177 TTC21BQ7Z4L5 1316 aa18.49■□□□□ 0.55
MSH6-208ENST00000493177 TTC21AQ8NDW8 1320 aa18.49■□□□□ 0.55
MSH6-208ENST00000493177 SOX12O15370 315 aa18.48■□□□□ 0.55
MSH6-208ENST00000493177 DDX10Q13206 875 aaKnown RBP18.48■□□□□ 0.55
MSH6-208ENST00000493177 SUGP2Q8IX01 1082 aaKnown RBP eCLIP18.47■□□□□ 0.55
MSH6-208ENST00000493177 SLIT3O75094 1523 aa18.47■□□□□ 0.55
MSH6-208ENST00000493177 CPDO75976 1380 aa18.46■□□□□ 0.55
MSH6-208ENST00000493177 TERF2IPQ9NYB0 399 aa18.46■□□□□ 0.55
MSH6-208ENST00000493177 USP35Q9P2H5 1018 aa18.46■□□□□ 0.55
MSH6-208ENST00000493177 CPSF1Q10570 1443 aaKnown RBP18.46■□□□□ 0.55
MSH6-208ENST00000493177 SPATA31A5Q5VU36 1347 aa18.46■□□□□ 0.55
MSH6-208ENST00000493177 SPATA31A7Q8IWB4 1347 aa18.46■□□□□ 0.55
MSH6-208ENST00000493177 LMO7Q8WWI1 1683 aa18.45■□□□□ 0.54
MSH6-208ENST00000493177 KRT27Q7Z3Y8 459 aa18.45■□□□□ 0.54
MSH6-208ENST00000493177 SLC12A5Q9H2X9 1139 aa18.45■□□□□ 0.54
MSH6-208ENST00000493177 SSH2Q76I76 1423 aa18.45■□□□□ 0.54
MSH6-208ENST00000493177 SF3B2Q13435 895 aaKnown RBP18.44■□□□□ 0.54
MSH6-208ENST00000493177 KCNH5Q8NCM2 988 aa18.44■□□□□ 0.54
MSH6-208ENST00000493177 NINLQ9Y2I6 1382 aa18.43■□□□□ 0.54
MSH6-208ENST00000493177 CAMTA1Q9Y6Y1 1673 aa18.43■□□□□ 0.54
MSH6-208ENST00000493177 RGPD5Q99666 1765 aa18.42■□□□□ 0.54
MSH6-208ENST00000493177 MYOM1P52179 1685 aa18.42■□□□□ 0.54
MSH6-208ENST00000493177 PANK3Q9H999 370 aa18.42■□□□□ 0.54
MSH6-208ENST00000493177 SPATA31A1Q5TZJ5 1347 aa18.42■□□□□ 0.54
MSH6-208ENST00000493177 ONECUT3O60422 494 aaPredicted RBP18.41■□□□□ 0.54
MSH6-208ENST00000493177 CCDC125Q86Z20 511 aa18.41■□□□□ 0.54
MSH6-208ENST00000493177 A0A1W2PP64 1363 aa18.41■□□□□ 0.54
MSH6-208ENST00000493177 THSD7AQ9UPZ6 1657 aa18.41■□□□□ 0.54
MSH6-208ENST00000493177 EDC4Q6P2E9 1401 aaKnown RBP18.4■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms