RNA–Protein interactions for RNA: ENST00000492980.1

CCDC88B-208, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 5

Gene CCDC88B, Length 2,118 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-208ENST00000492980 NUDT16Q96DE0 195 aaKnown RBP27.56■■■□□ 2
CCDC88B-208ENST00000492980 WDR63Q8IWG1 891 aa27.56■■■□□ 2
CCDC88B-208ENST00000492980 AKAP12Q02952 1782 aa27.55■■■□□ 2
CCDC88B-208ENST00000492980 SIPA1L2Q9P2F8 1722 aaPredicted RBP27.54■■■□□ 2
CCDC88B-208ENST00000492980 ITSN1Q15811 1721 aa27.54■■■□□ 2
CCDC88B-208ENST00000492980 U2SURPO15042 1029 aaKnown RBP27.53■■■□□ 2
CCDC88B-208ENST00000492980 PLEKHF1Q96S99 279 aa27.53■■■□□ 2
CCDC88B-208ENST00000492980 CCDC61Q9Y6R9 512 aa27.52■■■□□ 2
CCDC88B-208ENST00000492980 TRHP20396 242 aaPredicted RBP27.52■■■□□ 2
CCDC88B-208ENST00000492980 EID1Q9Y6B2 187 aa27.51■■□□□ 1.99
CCDC88B-208ENST00000492980 BCAR3O75815 825 aa27.5■■□□□ 1.99
CCDC88B-208ENST00000492980 NCKAP5LQ9HCH0 1330 aa27.5■■□□□ 1.99
CCDC88B-208ENST00000492980 DIAPH1O60610 1272 aaKnown RBP27.5■■□□□ 1.99
CCDC88B-208ENST00000492980 PTPRUQ92729 1446 aa27.5■■□□□ 1.99
CCDC88B-208ENST00000492980 PRR36Q9H6K5 1346 aa27.49■■□□□ 1.99
CCDC88B-208ENST00000492980 MAP2P11137 1827 aaKnown RBP27.49■■□□□ 1.99
CCDC88B-208ENST00000492980 FANCIQ9NVI1 1328 aa27.49■■□□□ 1.99
CCDC88B-208ENST00000492980 TOPAZ1Q8N9V7 1692 aa27.49■■□□□ 1.99
CCDC88B-208ENST00000492980 PLPPR3Q6T4P5 718 aa27.47■■□□□ 1.99
CCDC88B-208ENST00000492980 POLKQ9UBT6 870 aa27.47■■□□□ 1.99
CCDC88B-208ENST00000492980 NME9Q86XW9 330 aa27.46■■□□□ 1.99
CCDC88B-208ENST00000492980 SLC26A8Q96RN1 970 aa27.46■■□□□ 1.99
CCDC88B-208ENST00000492980 FBLN1P23142 703 aa27.44■■□□□ 1.98
CCDC88B-208ENST00000492980 TMPOP42166 694 aaKnown RBP27.43■■□□□ 1.98
CCDC88B-208ENST00000492980 MAPK8IP3Q9UPT6 1336 aa27.43■■□□□ 1.98
CCDC88B-208ENST00000492980 DIP2AQ14689 1571 aa27.43■■□□□ 1.98
CCDC88B-208ENST00000492980 NRKQ7Z2Y5 1582 aa27.42■■□□□ 1.98
CCDC88B-208ENST00000492980 THEMISQ8N1K5 641 aaPredicted RBP27.42■■□□□ 1.98
CCDC88B-208ENST00000492980 AATKQ6ZMQ8 1374 aa27.42■■□□□ 1.98
CCDC88B-208ENST00000492980 LRRC7Q96NW7 1537 aa27.41■■□□□ 1.98
CCDC88B-208ENST00000492980 ZNF692Q9BU19 519 aaPredicted RBP27.41■■□□□ 1.98
CCDC88B-208ENST00000492980 ZRANB1Q9UGI0 708 aa27.41■■□□□ 1.98
CCDC88B-208ENST00000492980 TBX22Q9Y458 520 aa27.41■■□□□ 1.98
CCDC88B-208ENST00000492980 MYH16Q9H6N6 1097 aa27.41■■□□□ 1.98
CCDC88B-208ENST00000492980 CDK12Q9NYV4 1490 aaPredicted RBP27.4■■□□□ 1.98
CCDC88B-208ENST00000492980 PNNQ9H307 717 aaKnown RBP27.4■■□□□ 1.98
CCDC88B-208ENST00000492980 PTCH1Q13635 1447 aa27.4■■□□□ 1.98
CCDC88B-208ENST00000492980 PPM1GO15355 546 aaPredicted RBP27.39■■□□□ 1.98
CCDC88B-208ENST00000492980 TRIM35Q9UPQ4 493 aa27.39■■□□□ 1.98
CCDC88B-208ENST00000492980 KDM2BQ8NHM5 1336 aa27.39■■□□□ 1.98
CCDC88B-208ENST00000492980 RARSP54136 660 aaKnown RBP27.38■■□□□ 1.97
CCDC88B-208ENST00000492980 TCERG1O14776 1098 aaKnown RBP27.38■■□□□ 1.97
CCDC88B-208ENST00000492980 COG3Q96JB2 828 aa27.38■■□□□ 1.97
CCDC88B-208ENST00000492980 AMOTL2Q9Y2J4 779 aa27.38■■□□□ 1.97
CCDC88B-208ENST00000492980 EMILIN1Q9Y6C2 1016 aa27.38■■□□□ 1.97
CCDC88B-208ENST00000492980 FCHSD2O94868 740 aa27.37■■□□□ 1.97
CCDC88B-208ENST00000492980 PDE3AQ14432 1141 aa27.37■■□□□ 1.97
CCDC88B-208ENST00000492980 CEP170BQ9Y4F5 1589 aaPredicted RBP27.36■■□□□ 1.97
CCDC88B-208ENST00000492980 XRN1Q8IZH2 1706 aaKnown RBP27.35■■□□□ 1.97
CCDC88B-208ENST00000492980 PLEKHG3A1L390 1219 aa27.35■■□□□ 1.97
CCDC88B-208ENST00000492980 RSPH6AQ9H0K4 717 aa27.35■■□□□ 1.97
CCDC88B-208ENST00000492980 RIMS1Q86UR5 1692 aaKnown RBP27.34■■□□□ 1.97
CCDC88B-208ENST00000492980 ACEP12821 1306 aa27.33■■□□□ 1.97
CCDC88B-208ENST00000492980 RIPK4P57078 832 aa27.32■■□□□ 1.96
CCDC88B-208ENST00000492980 CENPQQ7L2Z9 268 aaPredicted RBP27.32■■□□□ 1.96
CCDC88B-208ENST00000492980 IL16Q14005 1332 aa27.32■■□□□ 1.96
CCDC88B-208ENST00000492980 CANXP27824 592 aaKnown RBP27.32■■□□□ 1.96
CCDC88B-208ENST00000492980 IL13P35225 146 aa27.31■■□□□ 1.96
CCDC88B-208ENST00000492980 USP6P35125 1406 aa27.31■■□□□ 1.96
CCDC88B-208ENST00000492980 TTC21BQ7Z4L5 1316 aa27.31■■□□□ 1.96
CCDC88B-208ENST00000492980 MSH5O43196 834 aa27.31■■□□□ 1.96
CCDC88B-208ENST00000492980 PRKAR2BP31323 418 aa27.31■■□□□ 1.96
CCDC88B-208ENST00000492980 NUTM2FA1L443 756 aa27.3■■□□□ 1.96
CCDC88B-208ENST00000492980 MS4A1P11836 297 aa27.29■■□□□ 1.96
CCDC88B-208ENST00000492980 TSR2Q969E8 191 aaKnown RBP27.29■■□□□ 1.96
CCDC88B-208ENST00000492980 OVOS2A0A0J9YW53 1432 aa27.28■■□□□ 1.96
CCDC88B-208ENST00000492980 OVOS2Q6IE36 1432 aa27.28■■□□□ 1.96
CCDC88B-208ENST00000492980 CT47B1P0C2W7 299 aaPredicted RBP27.28■■□□□ 1.96
CCDC88B-208ENST00000492980 RRS1Q15050 365 aaKnown RBP27.28■■□□□ 1.96
CCDC88B-208ENST00000492980 PANK1Q8TE04 598 aa27.28■■□□□ 1.96
CCDC88B-208ENST00000492980 FRAT1Q92837 279 aaPredicted RBP27.28■■□□□ 1.96
CCDC88B-208ENST00000492980 NALCNQ8IZF0 1738 aa27.27■■□□□ 1.96
CCDC88B-208ENST00000492980 SSH2Q76I76 1423 aa27.26■■□□□ 1.95
CCDC88B-208ENST00000492980 HMOX1P09601 288 aa27.25■■□□□ 1.95
CCDC88B-208ENST00000492980 BCL2L13Q9BXK5 485 aa27.25■■□□□ 1.95
CCDC88B-208ENST00000492980 RGPD8O14715 1765 aaPredicted RBP27.24■■□□□ 1.95
CCDC88B-208ENST00000492980 SKAP1Q86WV1 359 aa27.24■■□□□ 1.95
CCDC88B-208ENST00000492980 COG6Q9Y2V7 657 aa27.24■■□□□ 1.95
CCDC88B-208ENST00000492980 NEFMP07197 916 aa27.23■■□□□ 1.95
CCDC88B-208ENST00000492980 ZNF142P52746 1687 aaPredicted RBP27.23■■□□□ 1.95
CCDC88B-208ENST00000492980 EXOSC9Q06265 439 aaKnown RBP27.23■■□□□ 1.95
CCDC88B-208ENST00000492980 PHACTR3Q96KR7 559 aa27.23■■□□□ 1.95
CCDC88B-208ENST00000492980 PIK3R4Q99570 1358 aa27.22■■□□□ 1.95
CCDC88B-208ENST00000492980 NFE2L2Q16236 605 aa27.22■■□□□ 1.95
CCDC88B-208ENST00000492980 ADAMTSL3P82987 1691 aa27.21■■□□□ 1.95
CCDC88B-208ENST00000492980 PDE4AP27815 886 aa27.2■■□□□ 1.94
CCDC88B-208ENST00000492980 CLUAP1Q96AJ1 413 aa27.2■■□□□ 1.94
CCDC88B-208ENST00000492980 TNNQ9UQP3 1299 aa27.2■■□□□ 1.94
CCDC88B-208ENST00000492980 USP31Q70CQ4 1352 aa27.19■■□□□ 1.94
CCDC88B-208ENST00000492980 RLBP1P12271 317 aa27.19■■□□□ 1.94
CCDC88B-208ENST00000492980 PEAK1Q9H792 1746 aa27.18■■□□□ 1.94
CCDC88B-208ENST00000492980 KCNA6P17658 529 aa27.18■■□□□ 1.94
CCDC88B-208ENST00000492980 BACH2Q9BYV9 841 aa27.17■■□□□ 1.94
CCDC88B-208ENST00000492980 PMFBP1Q8TBY8 1022 aa27.17■■□□□ 1.94
CCDC88B-208ENST00000492980 TTC21AQ8NDW8 1320 aa27.16■■□□□ 1.94
CCDC88B-208ENST00000492980 FMN2Q9NZ56 1722 aa27.16■■□□□ 1.94
CCDC88B-208ENST00000492980 ANKARQ7Z5J8 1434 aa27.16■■□□□ 1.94
CCDC88B-208ENST00000492980 DLG5Q8TDM6 1919 aa27.16■■□□□ 1.94
CCDC88B-208ENST00000492980 AAMPQ13685 434 aa27.15■■□□□ 1.94
CCDC88B-208ENST00000492980 ANP32EQ9BTT0 268 aa27.15■■□□□ 1.94
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms