RNA–Protein interactions for RNA: ENST00000490851.5

HDAC9-225, Transcript of histone deacetylase 9, humanhuman

TSL 2

Gene HDAC9, Length 2,419 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-225ENST00000490851 NUDCQ9Y266 331 aa13.35□□□□□ -0.27
HDAC9-225ENST00000490851 POLR3AO14802 1390 aaPredicted RBP13.35□□□□□ -0.27
HDAC9-225ENST00000490851 XRN1Q8IZH2 1706 aaKnown RBP13.35□□□□□ -0.27
HDAC9-225ENST00000490851 KIF20BQ96Q89 1820 aa13.34□□□□□ -0.27
HDAC9-225ENST00000490851 PMFBP1Q8TBY8 1022 aa13.34□□□□□ -0.27
HDAC9-225ENST00000490851 CFAP53Q96M91 514 aa13.34□□□□□ -0.27
HDAC9-225ENST00000490851 ADGRB2O60241 1585 aa13.34□□□□□ -0.27
HDAC9-225ENST00000490851 SMG6Q86US8 1419 aaKnown RBP13.34□□□□□ -0.27
HDAC9-225ENST00000490851 CDC42BPGQ6DT37 1551 aa13.34□□□□□ -0.27
HDAC9-225ENST00000490851 PPM1GO15355 546 aaPredicted RBP13.34□□□□□ -0.27
HDAC9-225ENST00000490851 CDCA7LQ96GN5 454 aa13.34□□□□□ -0.27
HDAC9-225ENST00000490851 CPSF1Q10570 1443 aaKnown RBP13.34□□□□□ -0.27
HDAC9-225ENST00000490851 AEBP2Q6ZN18 517 aaPredicted RBP13.33□□□□□ -0.27
HDAC9-225ENST00000490851 NPHP4O75161 1426 aaPredicted RBP13.33□□□□□ -0.28
HDAC9-225ENST00000490851 EDC4Q6P2E9 1401 aaKnown RBP13.33□□□□□ -0.28
HDAC9-225ENST00000490851 ACEP12821 1306 aa13.33□□□□□ -0.28
HDAC9-225ENST00000490851 APAF1O14727 1248 aa13.32□□□□□ -0.28
HDAC9-225ENST00000490851 ITSN1Q15811 1721 aa13.32□□□□□ -0.28
HDAC9-225ENST00000490851 ANKRD26Q9UPS8 1709 aa13.32□□□□□ -0.28
HDAC9-225ENST00000490851 NKTRP30414 1462 aaKnown RBP13.32□□□□□ -0.28
HDAC9-225ENST00000490851 BCL11BQ9C0K0 894 aaPredicted RBP13.31□□□□□ -0.28
HDAC9-225ENST00000490851 SHPRHQ149N8 1683 aa13.31□□□□□ -0.28
HDAC9-225ENST00000490851 INSRP06213 1382 aa13.31□□□□□ -0.28
HDAC9-225ENST00000490851 PIK3R4Q99570 1358 aa13.31□□□□□ -0.28
HDAC9-225ENST00000490851 U2SURPO15042 1029 aaKnown RBP13.3□□□□□ -0.28
HDAC9-225ENST00000490851 U2AF1L5P0DN76 240 aaPredicted RBP13.3□□□□□ -0.28
HDAC9-225ENST00000490851 U2AF1Q01081 240 aaKnown RBP eCLIP13.3□□□□□ -0.28
HDAC9-225ENST00000490851 C14orf37Q86TY3 774 aa13.3□□□□□ -0.28
HDAC9-225ENST00000490851 HSPA2P54652 639 aa13.3□□□□□ -0.28
HDAC9-225ENST00000490851 RGPD8O14715 1765 aaPredicted RBP13.29□□□□□ -0.28
HDAC9-225ENST00000490851 CHD2O14647 1828 aaKnown RBP13.29□□□□□ -0.28
HDAC9-225ENST00000490851 NEUROD2Q15784 382 aa13.29□□□□□ -0.28
HDAC9-225ENST00000490851 NGDNQ8NEJ9 315 aaKnown RBP13.29□□□□□ -0.28
HDAC9-225ENST00000490851 COG3Q96JB2 828 aa13.29□□□□□ -0.28
HDAC9-225ENST00000490851 ZNF692Q9BU19 519 aaPredicted RBP13.29□□□□□ -0.28
HDAC9-225ENST00000490851 MON2Q7Z3U7 1717 aa13.29□□□□□ -0.28
HDAC9-225ENST00000490851 TOPAZ1Q8N9V7 1692 aa13.29□□□□□ -0.28
HDAC9-225ENST00000490851 AKAP12Q02952 1782 aa13.29□□□□□ -0.28
HDAC9-225ENST00000490851 RRP7AQ9Y3A4 280 aaKnown RBP13.29□□□□□ -0.28
HDAC9-225ENST00000490851 SOX12O15370 315 aa13.28□□□□□ -0.28
HDAC9-225ENST00000490851 PLEKHG3A1L390 1219 aa13.28□□□□□ -0.28
HDAC9-225ENST00000490851 FBXO3Q9UK99 471 aa13.28□□□□□ -0.28
HDAC9-225ENST00000490851 EMILIN1Q9Y6C2 1016 aa13.28□□□□□ -0.28
HDAC9-225ENST00000490851 TTC21BQ7Z4L5 1316 aa13.27□□□□□ -0.29
HDAC9-225ENST00000490851 PDE3BQ13370 1112 aa13.27□□□□□ -0.29
HDAC9-225ENST00000490851 BRD2P25440 801 aaKnown RBP13.27□□□□□ -0.29
HDAC9-225ENST00000490851 RRS1Q15050 365 aaKnown RBP13.27□□□□□ -0.29
HDAC9-225ENST00000490851 POLKQ9UBT6 870 aa13.27□□□□□ -0.29
HDAC9-225ENST00000490851 NALCNQ8IZF0 1738 aa13.26□□□□□ -0.29
HDAC9-225ENST00000490851 USP6P35125 1406 aa13.26□□□□□ -0.29
HDAC9-225ENST00000490851 KDM4FA0A1W2PPD8 638 aa13.25□□□□□ -0.29
HDAC9-225ENST00000490851 DIAPH1O60610 1272 aaKnown RBP13.24□□□□□ -0.29
HDAC9-225ENST00000490851 RUNDC1Q96C34 613 aa13.24□□□□□ -0.29
HDAC9-225ENST00000490851 CHMP4AQ9BY43 222 aa13.24□□□□□ -0.29
HDAC9-225ENST00000490851 COL3A1P02461 1466 aaPredicted RBP13.24□□□□□ -0.29
HDAC9-225ENST00000490851 TCP11L2Q8N4U5 519 aa13.24□□□□□ -0.29
HDAC9-225ENST00000490851 MAP2P11137 1827 aaKnown RBP13.24□□□□□ -0.29
HDAC9-225ENST00000490851 GOLGA2Q08379 1002 aa13.23□□□□□ -0.29
HDAC9-225ENST00000490851 NUTM2GQ5VZR2 741 aa13.23□□□□□ -0.29
HDAC9-225ENST00000490851 NRKQ7Z2Y5 1582 aa13.23□□□□□ -0.29
HDAC9-225ENST00000490851 PROSER2Q86WR7 435 aaPredicted RBP13.23□□□□□ -0.29
HDAC9-225ENST00000490851 FMN2Q9NZ56 1722 aa13.23□□□□□ -0.29
HDAC9-225ENST00000490851 RCAN3Q9UKA8 241 aa13.23□□□□□ -0.29
HDAC9-225ENST00000490851 DMRT2Q9Y5R5 561 aa13.23□□□□□ -0.29
HDAC9-225ENST00000490851 PAK3O75914 559 aaPredicted RBP13.22□□□□□ -0.29
HDAC9-225ENST00000490851 CCDC136Q96JN2 1154 aa13.22□□□□□ -0.29
HDAC9-225ENST00000490851 ZNF521Q96K83 1311 aa13.22□□□□□ -0.29
HDAC9-225ENST00000490851 ANKARQ7Z5J8 1434 aa13.21□□□□□ -0.29
HDAC9-225ENST00000490851 ADGRL3Q9HAR2 1447 aa13.21□□□□□ -0.29
HDAC9-225ENST00000490851 AAMPQ13685 434 aa13.21□□□□□ -0.29
HDAC9-225ENST00000490851 ESCO1Q5FWF5 840 aa13.21□□□□□ -0.29
HDAC9-225ENST00000490851 SPINK5Q9NQ38 1064 aaPredicted RBP13.21□□□□□ -0.29
HDAC9-225ENST00000490851 PHF8Q9UPP1 1060 aa13.2□□□□□ -0.3
HDAC9-225ENST00000490851 PNPLA6Q8IY17 1366 aa13.2□□□□□ -0.3
HDAC9-225ENST00000490851 HMOX1P09601 288 aa13.2□□□□□ -0.3
HDAC9-225ENST00000490851 DUSP27Q5VZP5 1158 aa13.19□□□□□ -0.3
HDAC9-225ENST00000490851 WWC1Q8IX03 1113 aa13.19□□□□□ -0.3
HDAC9-225ENST00000490851 MAPK8IP3Q9UPT6 1336 aa13.19□□□□□ -0.3
HDAC9-225ENST00000490851 OVOS2A0A0J9YW53 1432 aa13.19□□□□□ -0.3
HDAC9-225ENST00000490851 OVOS2Q6IE36 1432 aa13.19□□□□□ -0.3
HDAC9-225ENST00000490851 SSH2Q76I76 1423 aa13.19□□□□□ -0.3
HDAC9-225ENST00000490851 IQSEC2Q5JU85 1478 aa13.18□□□□□ -0.3
HDAC9-225ENST00000490851 NLRP6P59044 892 aa13.18□□□□□ -0.3
HDAC9-225ENST00000490851 SLFN5Q08AF3 891 aa13.18□□□□□ -0.3
HDAC9-225ENST00000490851 AATKQ6ZMQ8 1374 aa13.18□□□□□ -0.3
HDAC9-225ENST00000490851 KCNA4P22459 653 aa13.18□□□□□ -0.3
HDAC9-225ENST00000490851 XPCQ01831 940 aaPredicted RBP13.18□□□□□ -0.3
HDAC9-225ENST00000490851 TTC21AQ8NDW8 1320 aa13.17□□□□□ -0.3
HDAC9-225ENST00000490851 RRP1P56182 461 aaKnown RBP13.17□□□□□ -0.3
HDAC9-225ENST00000490851 ORAI2Q96SN7 254 aa13.17□□□□□ -0.3
HDAC9-225ENST00000490851 NWD1Q149M9 1564 aa13.17□□□□□ -0.3
HDAC9-225ENST00000490851 CDK12Q9NYV4 1490 aaPredicted RBP13.17□□□□□ -0.3
HDAC9-225ENST00000490851 PLIN1O60240 522 aa13.17□□□□□ -0.3
HDAC9-225ENST00000490851 PRKAR2BP31323 418 aa13.17□□□□□ -0.3
HDAC9-225ENST00000490851 ABTB2Q8N961 1025 aa13.17□□□□□ -0.3
HDAC9-225ENST00000490851 PLEKHF1Q96S99 279 aa13.16□□□□□ -0.3
HDAC9-225ENST00000490851 RNF123Q5XPI4 1314 aa13.16□□□□□ -0.3
HDAC9-225ENST00000490851 PIK3C2AO00443 1686 aa13.16□□□□□ -0.3
HDAC9-225ENST00000490851 IL13P35225 146 aa13.15□□□□□ -0.3
HDAC9-225ENST00000490851 PSME1Q06323 249 aa13.15□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms