RNA–Protein interactions for RNA: ENST00000490689.3

SHOX2-205, Transcript of short stature homeobox 2, humanhuman

TSL 5

Gene SHOX2, Length 4,184 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-205ENST00000490689 FBXW7Q969H0 707 aa15.58■□□□□ 0.08
SHOX2-205ENST00000490689 MAGI3Q5TCQ9 1506 aa15.58■□□□□ 0.08
SHOX2-205ENST00000490689 CBX1P83916 185 aa15.57■□□□□ 0.08
SHOX2-205ENST00000490689 MTERF4Q7Z6M4 381 aaKnown RBP15.57■□□□□ 0.08
SHOX2-205ENST00000490689 CT47B1P0C2W7 299 aaPredicted RBP15.57■□□□□ 0.08
SHOX2-205ENST00000490689 PODXL2Q9NZ53 605 aa15.57■□□□□ 0.08
SHOX2-205ENST00000490689 COG3Q96JB2 828 aa15.57■□□□□ 0.08
SHOX2-205ENST00000490689 ATP6V1DQ9Y5K8 247 aa15.57■□□□□ 0.08
SHOX2-205ENST00000490689 FBLN1P23142 703 aa15.57■□□□□ 0.08
SHOX2-205ENST00000490689 KLHL40Q2TBA0 621 aa15.57■□□□□ 0.08
SHOX2-205ENST00000490689 CWC22Q9HCG8 908 aaKnown RBP15.57■□□□□ 0.08
SHOX2-205ENST00000490689 URB2Q14146 1524 aaKnown RBP15.56■□□□□ 0.08
SHOX2-205ENST00000490689 DCTN1Q14203 1278 aa15.56■□□□□ 0.08
SHOX2-205ENST00000490689 ZSCAN23Q3MJ62 389 aa15.56■□□□□ 0.08
SHOX2-205ENST00000490689 ERC2O15083 957 aa15.56■□□□□ 0.08
SHOX2-205ENST00000490689 HSP90B1P14625 803 aaKnown RBP15.56■□□□□ 0.08
SHOX2-205ENST00000490689 BMP2KLQ5H9B9 411 aa15.55■□□□□ 0.08
SHOX2-205ENST00000490689 ZNF830Q96NB3 372 aaPredicted RBP15.55■□□□□ 0.08
SHOX2-205ENST00000490689 CCDC9Q9Y3X0 531 aaKnown RBP15.55■□□□□ 0.08
SHOX2-205ENST00000490689 SCAPERQ9BY12 1400 aa15.55■□□□□ 0.08
SHOX2-205ENST00000490689 KIAA0586Q9BVV6 1533 aa15.55■□□□□ 0.08
SHOX2-205ENST00000490689 NPHP1O15259 732 aa15.54■□□□□ 0.08
SHOX2-205ENST00000490689 MAP4K4O95819 1239 aaPredicted RBP15.54■□□□□ 0.08
SHOX2-205ENST00000490689 PRIM1P49642 420 aaKnown RBP15.54■□□□□ 0.08
SHOX2-205ENST00000490689 GAS2L3Q86XJ1 694 aa15.54■□□□□ 0.08
SHOX2-205ENST00000490689 DIAPH3Q9NSV4 1193 aa15.54■□□□□ 0.08
SHOX2-205ENST00000490689 EIF2S2P20042 333 aaKnown RBP15.54■□□□□ 0.08
SHOX2-205ENST00000490689 LARP6Q9BRS8 491 aaKnown RBP15.54■□□□□ 0.08
SHOX2-205ENST00000490689 CABP1Q9NZU7 370 aa15.54■□□□□ 0.08
SHOX2-205ENST00000490689 USP25Q9UHP3 1055 aa15.54■□□□□ 0.08
SHOX2-205ENST00000490689 GOLGA6L19H0YKK7 550 aa15.53■□□□□ 0.08
SHOX2-205ENST00000490689 NUCB1Q02818 461 aa15.53■□□□□ 0.08
SHOX2-205ENST00000490689 HDAC1Q13547 482 aaPredicted RBP15.53■□□□□ 0.08
SHOX2-205ENST00000490689 ZMYM4Q5VZL5 1548 aa15.53■□□□□ 0.08
SHOX2-205ENST00000490689 MAGI1Q96QZ7 1491 aaPredicted RBP15.53■□□□□ 0.08
SHOX2-205ENST00000490689 FOSBP53539 338 aa15.53■□□□□ 0.08
SHOX2-205ENST00000490689 RAB3GAP1Q15042 981 aa15.53■□□□□ 0.08
SHOX2-205ENST00000490689 EXOC6BQ9Y2D4 811 aa15.53■□□□□ 0.08
SHOX2-205ENST00000490689 BECN2A8MW95 431 aa15.53■□□□□ 0.08
SHOX2-205ENST00000490689 BICD2Q8TD16 824 aa15.53■□□□□ 0.08
SHOX2-205ENST00000490689 PRAM1Q96QH2 718 aa15.53■□□□□ 0.08
SHOX2-205ENST00000490689 BLMP54132 1417 aaPredicted RBP15.52■□□□□ 0.08
SHOX2-205ENST00000490689 HMGN5P82970 282 aaKnown RBP15.52■□□□□ 0.08
SHOX2-205ENST00000490689 SYNJ2O15056 1496 aa15.52■□□□□ 0.08
SHOX2-205ENST00000490689 SLC4A2P04920 1241 aa15.52■□□□□ 0.08
SHOX2-205ENST00000490689 TSHZ3Q63HK5 1081 aa15.52■□□□□ 0.08
SHOX2-205ENST00000490689 NUP153P49790 1475 aaKnown RBP15.52■□□□□ 0.07
SHOX2-205ENST00000490689 CCDC141Q6ZP82 1450 aa15.52■□□□□ 0.07
SHOX2-205ENST00000490689 C16orf71Q8IYS4 520 aaPredicted RBP15.51■□□□□ 0.07
SHOX2-205ENST00000490689 ANTXR1Q9H6X2 564 aa15.51■□□□□ 0.07
SHOX2-205ENST00000490689 TSPYL4Q9UJ04 414 aa15.51■□□□□ 0.07
SHOX2-205ENST00000490689 AMPHP49418 695 aa15.5■□□□□ 0.07
SHOX2-205ENST00000490689 SMC5Q8IY18 1101 aa15.5■□□□□ 0.07
SHOX2-205ENST00000490689 ZNF428Q96B54 188 aa15.5■□□□□ 0.07
SHOX2-205ENST00000490689 USP19O94966 1318 aa15.5■□□□□ 0.07
SHOX2-205ENST00000490689 UHRF1BP1Q6BDS2 1440 aa15.5■□□□□ 0.07
SHOX2-205ENST00000490689 ZGPATQ8N5A5 531 aaKnown RBP15.5■□□□□ 0.07
SHOX2-205ENST00000490689 TRIM5Q9C035 493 aa15.5■□□□□ 0.07
SHOX2-205ENST00000490689 FAM177BA6PVY3 158 aa15.5■□□□□ 0.07
SHOX2-205ENST00000490689 SASS6Q6UVJ0 657 aa15.5■□□□□ 0.07
SHOX2-205ENST00000490689 DENND4BO75064 1496 aaPredicted RBP15.5■□□□□ 0.07
SHOX2-205ENST00000490689 TNNT3P45378 269 aaPredicted RBP15.5■□□□□ 0.07
SHOX2-205ENST00000490689 ASXL1Q8IXJ9 1541 aa15.49■□□□□ 0.07
SHOX2-205ENST00000490689 H3BQV1 296 aa15.49■□□□□ 0.07
SHOX2-205ENST00000490689 IFFO2Q5TF58 517 aa15.49■□□□□ 0.07
SHOX2-205ENST00000490689 IL1RAPL2Q9NP60 686 aa15.49■□□□□ 0.07
SHOX2-205ENST00000490689 MAPK8IP2Q13387 824 aaPredicted RBP15.49■□□□□ 0.07
SHOX2-205ENST00000490689 SNX21Q969T3 373 aa15.49■□□□□ 0.07
SHOX2-205ENST00000490689 MIS18AQ9NYP9 233 aa15.49■□□□□ 0.07
SHOX2-205ENST00000490689 KIF3AQ9Y496 699 aa15.49■□□□□ 0.07
SHOX2-205ENST00000490689 SCAF11Q99590 1463 aaKnown RBP15.49■□□□□ 0.07
SHOX2-205ENST00000490689 OFD1O75665 1012 aa15.49■□□□□ 0.07
SHOX2-205ENST00000490689 COL17A1Q9UMD9 1497 aaPredicted RBP15.49■□□□□ 0.07
SHOX2-205ENST00000490689 SPDYE4A6NLX3 237 aa15.48■□□□□ 0.07
SHOX2-205ENST00000490689 KDM5BQ9UGL1 1544 aa15.48■□□□□ 0.07
SHOX2-205ENST00000490689 CTTNBP2Q8WZ74 1663 aa15.48■□□□□ 0.07
SHOX2-205ENST00000490689 SURF6O75683 361 aaKnown RBP15.48■□□□□ 0.07
SHOX2-205ENST00000490689 RRS1Q15050 365 aaKnown RBP15.48■□□□□ 0.07
SHOX2-205ENST00000490689 DDX54Q8TDD1 881 aaKnown RBP15.48■□□□□ 0.07
SHOX2-205ENST00000490689 MRC2Q9UBG0 1479 aa15.48■□□□□ 0.07
SHOX2-205ENST00000490689 HTATSF1O43719 755 aaKnown RBP15.47■□□□□ 0.07
SHOX2-205ENST00000490689 ZKSCAN1P17029 563 aaPredicted RBP15.47■□□□□ 0.07
SHOX2-205ENST00000490689 RBSNQ9H1K0 784 aa15.47■□□□□ 0.07
SHOX2-205ENST00000490689 SULT6B1Q6IMI4 303 aa15.46■□□□□ 0.07
SHOX2-205ENST00000490689 ZBTB40Q9NUA8 1239 aa15.46■□□□□ 0.07
SHOX2-205ENST00000490689 FSD2A1L4K1 749 aa15.46■□□□□ 0.07
SHOX2-205ENST00000490689 MCM2P49736 904 aa15.46■□□□□ 0.07
SHOX2-205ENST00000490689 TPD52L1Q16890 204 aaPredicted RBP15.46■□□□□ 0.07
SHOX2-205ENST00000490689 GPATCH3Q96I76 525 aa15.46■□□□□ 0.07
SHOX2-205ENST00000490689 CHAMP1Q96JM3 812 aa15.46■□□□□ 0.07
SHOX2-205ENST00000490689 WDR33Q9C0J8 1336 aaKnown RBP15.46■□□□□ 0.07
SHOX2-205ENST00000490689 PDCL2Q8N4E4 241 aa15.46■□□□□ 0.06
SHOX2-205ENST00000490689 FAM184AQ8NB25 1140 aa15.46■□□□□ 0.06
SHOX2-205ENST00000490689 IGSF3O75054 1194 aa15.45■□□□□ 0.06
SHOX2-205ENST00000490689 FCHSD2O94868 740 aa15.45■□□□□ 0.06
SHOX2-205ENST00000490689 FERMT3Q86UX7 667 aa15.45■□□□□ 0.06
SHOX2-205ENST00000490689 CCAR2Q8N163 923 aaKnown RBP15.45■□□□□ 0.06
SHOX2-205ENST00000490689 TTC12Q9H892 705 aaPredicted RBP15.45■□□□□ 0.06
SHOX2-205ENST00000490689 SF3A1Q15459 793 aaKnown RBP15.45■□□□□ 0.06
SHOX2-205ENST00000490689 ZKSCAN5Q9Y2L8 839 aa15.45■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms