RNA–Protein interactions for RNA: ENST00000490099.5

TMEM39A-210, Transcript of transmembrane protein 39A, humanhuman

TSL 3

Gene TMEM39A, Length 868 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-210ENST00000490099 ONECUT3O60422 494 aaPredicted RBP14.04□□□□□ -0.16
TMEM39A-210ENST00000490099 TNKS1BP1Q9C0C2 1729 aaKnown RBP14.04□□□□□ -0.16
TMEM39A-210ENST00000490099 VPS72Q15906 364 aa14.03□□□□□ -0.16
TMEM39A-210ENST00000490099 NGDNQ8NEJ9 315 aaKnown RBP14.03□□□□□ -0.16
TMEM39A-210ENST00000490099 FOXD4L1Q9NU39 408 aa14.03□□□□□ -0.16
TMEM39A-210ENST00000490099 ALS2Q96Q42 1657 aa14.03□□□□□ -0.16
TMEM39A-210ENST00000490099 CENPJQ9HC77 1338 aaPredicted RBP14.02□□□□□ -0.17
TMEM39A-210ENST00000490099 NBPF8Q3BBV2 869 aa14.02□□□□□ -0.17
TMEM39A-210ENST00000490099 LMOD2Q6P5Q4 547 aa14.01□□□□□ -0.17
TMEM39A-210ENST00000490099 RALGAPBQ86X10 1494 aa14□□□□□ -0.17
TMEM39A-210ENST00000490099 ACEP12821 1306 aa14□□□□□ -0.17
TMEM39A-210ENST00000490099 GLI3P10071 1580 aa14□□□□□ -0.17
TMEM39A-210ENST00000490099 ATAD2Q6PL18 1390 aa13.99□□□□□ -0.17
TMEM39A-210ENST00000490099 ABCA3Q99758 1704 aa13.99□□□□□ -0.17
TMEM39A-210ENST00000490099 HAP1P54257 671 aaPredicted RBP13.99□□□□□ -0.17
TMEM39A-210ENST00000490099 NEUROD1Q13562 356 aa13.99□□□□□ -0.17
TMEM39A-210ENST00000490099 NWD2Q9ULI1 1742 aa13.98□□□□□ -0.17
TMEM39A-210ENST00000490099 ITSN1Q15811 1721 aa13.98□□□□□ -0.17
TMEM39A-210ENST00000490099 TOPAZ1Q8N9V7 1692 aa13.98□□□□□ -0.17
TMEM39A-210ENST00000490099 TRPM1Q7Z4N2 1603 aa13.97□□□□□ -0.17
TMEM39A-210ENST00000490099 BRD4O60885 1362 aaPredicted RBP13.96□□□□□ -0.17
TMEM39A-210ENST00000490099 CRYBG1Q9Y4K1 1723 aa13.96□□□□□ -0.17
TMEM39A-210ENST00000490099 PAK3O75914 559 aaPredicted RBP13.96□□□□□ -0.17
TMEM39A-210ENST00000490099 CCDC125Q86Z20 511 aa13.96□□□□□ -0.17
TMEM39A-210ENST00000490099 CABP2Q9NPB3 220 aa13.96□□□□□ -0.17
TMEM39A-210ENST00000490099 SRPK2P78362 688 aaKnown RBP13.95□□□□□ -0.18
TMEM39A-210ENST00000490099 TRIM26Q12899 539 aaPredicted RBP13.95□□□□□ -0.18
TMEM39A-210ENST00000490099 BTG4Q9NY30 223 aa13.95□□□□□ -0.18
TMEM39A-210ENST00000490099 USP19O94966 1318 aa13.94□□□□□ -0.18
TMEM39A-210ENST00000490099 PPIP5K1Q6PFW1 1433 aa13.94□□□□□ -0.18
TMEM39A-210ENST00000490099 SSH2Q76I76 1423 aa13.94□□□□□ -0.18
TMEM39A-210ENST00000490099 SEPT12Q8IYM1 358 aa13.94□□□□□ -0.18
TMEM39A-210ENST00000490099 PLCH1Q4KWH8 1693 aa13.94□□□□□ -0.18
TMEM39A-210ENST00000490099 ROCK2O75116 1388 aaKnown RBP13.94□□□□□ -0.18
TMEM39A-210ENST00000490099 COL14A1Q05707 1796 aaKnown RBP13.94□□□□□ -0.18
TMEM39A-210ENST00000490099 PLEKHG5O94827 1062 aa13.93□□□□□ -0.18
TMEM39A-210ENST00000490099 CABP1Q9NZU7 370 aa13.93□□□□□ -0.18
TMEM39A-210ENST00000490099 SBNO2Q9Y2G9 1366 aa13.93□□□□□ -0.18
TMEM39A-210ENST00000490099 SPATA31A5Q5VU36 1347 aa13.92□□□□□ -0.18
TMEM39A-210ENST00000490099 EVC2Q86UK5 1308 aa13.92□□□□□ -0.18
TMEM39A-210ENST00000490099 SPATA31A7Q8IWB4 1347 aa13.92□□□□□ -0.18
TMEM39A-210ENST00000490099 ABTB2Q8N961 1025 aa13.92□□□□□ -0.18
TMEM39A-210ENST00000490099 PRDM11Q9NQV5 511 aa13.92□□□□□ -0.18
TMEM39A-210ENST00000490099 CPDO75976 1380 aa13.92□□□□□ -0.18
TMEM39A-210ENST00000490099 KIAA0232Q92628 1395 aa13.92□□□□□ -0.18
TMEM39A-210ENST00000490099 NRAPQ86VF7 1730 aa13.92□□□□□ -0.18
TMEM39A-210ENST00000490099 QRICH2Q9H0J4 1663 aa13.91□□□□□ -0.18
TMEM39A-210ENST00000490099 USP6P35125 1406 aa13.9□□□□□ -0.18
TMEM39A-210ENST00000490099 NLRP13Q86W25 1043 aa13.9□□□□□ -0.18
TMEM39A-210ENST00000490099 RNF39Q9H2S5 420 aa13.9□□□□□ -0.18
TMEM39A-210ENST00000490099 U3KPZ7 1027 aaPredicted RBP13.9□□□□□ -0.18
TMEM39A-210ENST00000490099 GCP02774 474 aa13.89□□□□□ -0.19
TMEM39A-210ENST00000490099 ZC3H6P61129 1189 aaKnown RBP13.89□□□□□ -0.19
TMEM39A-210ENST00000490099 NUTM2GQ5VZR2 741 aa13.89□□□□□ -0.19
TMEM39A-210ENST00000490099 ZNF692Q9BU19 519 aaPredicted RBP13.89□□□□□ -0.19
TMEM39A-210ENST00000490099 EP400Q96L91 3159 aa13.88□□□□□ -0.19
TMEM39A-210ENST00000490099 CHRNA2Q15822 529 aa13.88□□□□□ -0.19
TMEM39A-210ENST00000490099 KRT27Q7Z3Y8 459 aa13.88□□□□□ -0.19
TMEM39A-210ENST00000490099 CCDC9Q9Y3X0 531 aaKnown RBP13.88□□□□□ -0.19
TMEM39A-210ENST00000490099 BLMP54132 1417 aaPredicted RBP13.88□□□□□ -0.19
TMEM39A-210ENST00000490099 CPSF1Q10570 1443 aaKnown RBP13.88□□□□□ -0.19
TMEM39A-210ENST00000490099 SPATA31A1Q5TZJ5 1347 aa13.88□□□□□ -0.19
TMEM39A-210ENST00000490099 BRWD3Q6RI45 1802 aa13.87□□□□□ -0.19
TMEM39A-210ENST00000490099 PHRF1Q9P1Y6 1649 aaKnown RBP13.87□□□□□ -0.19
TMEM39A-210ENST00000490099 FAM98CQ17RN3 349 aaKnown RBP13.87□□□□□ -0.19
TMEM39A-210ENST00000490099 PUS7Q96PZ0 661 aaKnown RBP13.87□□□□□ -0.19
TMEM39A-210ENST00000490099 CAMTA1Q9Y6Y1 1673 aa13.86□□□□□ -0.19
TMEM39A-210ENST00000490099 CARD11Q9BXL7 1154 aa13.86□□□□□ -0.19
TMEM39A-210ENST00000490099 TONSLQ96HA7 1378 aa13.85□□□□□ -0.19
TMEM39A-210ENST00000490099 NRKQ7Z2Y5 1582 aa13.85□□□□□ -0.19
TMEM39A-210ENST00000490099 BARGINQ6ZT62 677 aa13.85□□□□□ -0.19
TMEM39A-210ENST00000490099 NLRP6P59044 892 aa13.84□□□□□ -0.19
TMEM39A-210ENST00000490099 LMO7Q8WWI1 1683 aa13.84□□□□□ -0.19
TMEM39A-210ENST00000490099 TTC21BQ7Z4L5 1316 aa13.84□□□□□ -0.19
TMEM39A-210ENST00000490099 SLIT3O75094 1523 aa13.84□□□□□ -0.19
TMEM39A-210ENST00000490099 AATKQ6ZMQ8 1374 aa13.83□□□□□ -0.19
TMEM39A-210ENST00000490099 THSD7AQ9UPZ6 1657 aa13.83□□□□□ -0.2
TMEM39A-210ENST00000490099 MYCNP04198 464 aaPredicted RBP13.83□□□□□ -0.2
TMEM39A-210ENST00000490099 TESK2Q96S53 571 aa13.83□□□□□ -0.2
TMEM39A-210ENST00000490099 TTC21AQ8NDW8 1320 aa13.83□□□□□ -0.2
TMEM39A-210ENST00000490099 LARP1Q6PKG0 1096 aaKnown RBP13.82□□□□□ -0.2
TMEM39A-210ENST00000490099 EVA1CP58658 441 aa13.81□□□□□ -0.2
TMEM39A-210ENST00000490099 ARHGEF25Q86VW2 580 aa13.81□□□□□ -0.2
TMEM39A-210ENST00000490099 STRN4Q9NRL3 753 aa13.81□□□□□ -0.2
TMEM39A-210ENST00000490099 CD163L1Q9NR16 1453 aa13.8□□□□□ -0.2
TMEM39A-210ENST00000490099 PIK3C2AO00443 1686 aa13.8□□□□□ -0.2
TMEM39A-210ENST00000490099 DEFB132Q7Z7B7 95 aa13.8□□□□□ -0.2
TMEM39A-210ENST00000490099 THRAP3Q9Y2W1 955 aaKnown RBP13.8□□□□□ -0.2
TMEM39A-210ENST00000490099 USP31Q70CQ4 1352 aa13.8□□□□□ -0.2
TMEM39A-210ENST00000490099 COL5A2P05997 1499 aaPredicted RBP13.8□□□□□ -0.2
TMEM39A-210ENST00000490099 AKAP12Q02952 1782 aa13.79□□□□□ -0.2
TMEM39A-210ENST00000490099 SLC24A1O60721 1099 aa13.79□□□□□ -0.2
TMEM39A-210ENST00000490099 TCP11L2Q8N4U5 519 aa13.79□□□□□ -0.2
TMEM39A-210ENST00000490099 KCNH5Q8NCM2 988 aa13.79□□□□□ -0.2
TMEM39A-210ENST00000490099 ZRANB1Q9UGI0 708 aa13.79□□□□□ -0.2
TMEM39A-210ENST00000490099 KTN1Q86UP2 1357 aaKnown RBP13.79□□□□□ -0.2
TMEM39A-210ENST00000490099 COL18A1P39060 1754 aa13.78□□□□□ -0.2
TMEM39A-210ENST00000490099 SLC12A5Q9H2X9 1139 aa13.78□□□□□ -0.2
TMEM39A-210ENST00000490099 TIMELESSQ9UNS1 1208 aa13.78□□□□□ -0.2
TMEM39A-210ENST00000490099 AXIN2Q9Y2T1 843 aa13.78□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms