RNA–Protein interactions for RNA: ENST00000489442.5

CCL28-202, Transcript of C-C motif chemokine ligand 28, humanhuman

TSL 1 (best)

Gene CCL28, Length 1,342 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCL28-202ENST00000489442 ALS2Q96Q42 1657 aa18.86■□□□□ 0.61
CCL28-202ENST00000489442 ST20-MTHFSA0A0A6YYL1 179 aa18.85■□□□□ 0.61
CCL28-202ENST00000489442 RXRBP28702 533 aa18.85■□□□□ 0.61
CCL28-202ENST00000489442 SLC24A1O60721 1099 aa18.84■□□□□ 0.61
CCL28-202ENST00000489442 ATAD2Q6PL18 1390 aa18.84■□□□□ 0.61
CCL28-202ENST00000489442 FNBP4Q8N3X1 1017 aaPredicted RBP18.83■□□□□ 0.61
CCL28-202ENST00000489442 ABTB2Q8N961 1025 aa18.83■□□□□ 0.61
CCL28-202ENST00000489442 NUTM2GQ5VZR2 741 aa18.82■□□□□ 0.6
CCL28-202ENST00000489442 ABCA3Q99758 1704 aa18.82■□□□□ 0.6
CCL28-202ENST00000489442 TMC1Q8TDI8 760 aa18.81■□□□□ 0.6
CCL28-202ENST00000489442 TRPC5Q9UL62 973 aaPredicted RBP18.81■□□□□ 0.6
CCL28-202ENST00000489442 ZNF692Q9BU19 519 aaPredicted RBP18.8■□□□□ 0.6
CCL28-202ENST00000489442 USP47Q96K76 1375 aa18.8■□□□□ 0.6
CCL28-202ENST00000489442 RBM6P78332 1123 aaKnown RBP18.79■□□□□ 0.6
CCL28-202ENST00000489442 BRD4O60885 1362 aaPredicted RBP18.79■□□□□ 0.6
CCL28-202ENST00000489442 USP6P35125 1406 aa18.78■□□□□ 0.6
CCL28-202ENST00000489442 NLRP13Q86W25 1043 aa18.77■□□□□ 0.6
CCL28-202ENST00000489442 TESK2Q96S53 571 aa18.77■□□□□ 0.6
CCL28-202ENST00000489442 FAM83GA6ND36 823 aa18.76■□□□□ 0.59
CCL28-202ENST00000489442 UNC5CLQ8IV45 518 aa18.76■□□□□ 0.59
CCL28-202ENST00000489442 AKAP12Q02952 1782 aa18.76■□□□□ 0.59
CCL28-202ENST00000489442 BCL9LQ86UU0 1499 aa18.76■□□□□ 0.59
CCL28-202ENST00000489442 KTN1Q86UP2 1357 aaKnown RBP18.76■□□□□ 0.59
CCL28-202ENST00000489442 TMF1P82094 1093 aa18.75■□□□□ 0.59
CCL28-202ENST00000489442 PUS7Q96PZ0 661 aaKnown RBP18.75■□□□□ 0.59
CCL28-202ENST00000489442 PRDM11Q9NQV5 511 aa18.75■□□□□ 0.59
CCL28-202ENST00000489442 CRYBG1Q9Y4K1 1723 aa18.75■□□□□ 0.59
CCL28-202ENST00000489442 NLRP6P59044 892 aa18.74■□□□□ 0.59
CCL28-202ENST00000489442 HDGFL2Q7Z4V5 671 aaPredicted RBP18.74■□□□□ 0.59
CCL28-202ENST00000489442 PLCH1Q4KWH8 1693 aa18.74■□□□□ 0.59
CCL28-202ENST00000489442 SLIT2O94813 1529 aa18.74■□□□□ 0.59
CCL28-202ENST00000489442 ZC3H6P61129 1189 aaKnown RBP18.74■□□□□ 0.59
CCL28-202ENST00000489442 SLC12A5Q9H2X9 1139 aa18.74■□□□□ 0.59
CCL28-202ENST00000489442 CCDC9Q9Y3X0 531 aaKnown RBP18.74■□□□□ 0.59
CCL28-202ENST00000489442 ATRNO75882 1429 aa18.73■□□□□ 0.59
CCL28-202ENST00000489442 TNKS1BP1Q9C0C2 1729 aaKnown RBP18.73■□□□□ 0.59
CCL28-202ENST00000489442 NWD2Q9ULI1 1742 aa18.73■□□□□ 0.59
CCL28-202ENST00000489442 PHRF1Q9P1Y6 1649 aaKnown RBP18.73■□□□□ 0.59
CCL28-202ENST00000489442 BTG4Q9NY30 223 aa18.73■□□□□ 0.59
CCL28-202ENST00000489442 TERF2IPQ9NYB0 399 aa18.73■□□□□ 0.59
CCL28-202ENST00000489442 COL14A1Q05707 1796 aaKnown RBP18.72■□□□□ 0.59
CCL28-202ENST00000489442 CDCA8Q53HL2 280 aa18.72■□□□□ 0.59
CCL28-202ENST00000489442 GJD4Q96KN9 370 aaPredicted RBP18.72■□□□□ 0.59
CCL28-202ENST00000489442 CDK12Q9NYV4 1490 aaPredicted RBP18.72■□□□□ 0.59
CCL28-202ENST00000489442 TTC21BQ7Z4L5 1316 aa18.71■□□□□ 0.59
CCL28-202ENST00000489442 CPSF1Q10570 1443 aaKnown RBP18.71■□□□□ 0.59
CCL28-202ENST00000489442 TTC21AQ8NDW8 1320 aa18.7■□□□□ 0.58
CCL28-202ENST00000489442 KIAA0232Q92628 1395 aa18.7■□□□□ 0.58
CCL28-202ENST00000489442 GCP02774 474 aa18.7■□□□□ 0.58
CCL28-202ENST00000489442 CHRNA2Q15822 529 aa18.7■□□□□ 0.58
CCL28-202ENST00000489442 SUGP2Q8IX01 1082 aaKnown RBP eCLIP18.7■□□□□ 0.58
CCL28-202ENST00000489442 SSH2Q76I76 1423 aa18.69■□□□□ 0.58
CCL28-202ENST00000489442 USP19O94966 1318 aa18.69■□□□□ 0.58
CCL28-202ENST00000489442 NINLQ9Y2I6 1382 aa18.68■□□□□ 0.58
CCL28-202ENST00000489442 MON2Q7Z3U7 1717 aa18.68■□□□□ 0.58
CCL28-202ENST00000489442 PIK3C2AO00443 1686 aa18.68■□□□□ 0.58
CCL28-202ENST00000489442 ZBTB7CA1YPR0 619 aa18.68■□□□□ 0.58
CCL28-202ENST00000489442 EIF4G2P78344 907 aaKnown RBP eCLIP18.68■□□□□ 0.58
CCL28-202ENST00000489442 VPS72Q15906 364 aa18.68■□□□□ 0.58
CCL28-202ENST00000489442 RGS12O14924 1447 aa18.67■□□□□ 0.58
CCL28-202ENST00000489442 NRKQ7Z2Y5 1582 aa18.66■□□□□ 0.58
CCL28-202ENST00000489442 A0A1W2PP64 1363 aa18.65■□□□□ 0.58
CCL28-202ENST00000489442 SOX12O15370 315 aa18.65■□□□□ 0.58
CCL28-202ENST00000489442 EVA1CP58658 441 aa18.65■□□□□ 0.58
CCL28-202ENST00000489442 CD163L1Q9NR16 1453 aa18.65■□□□□ 0.58
CCL28-202ENST00000489442 STRN4Q9NRL3 753 aa18.65■□□□□ 0.58
CCL28-202ENST00000489442 KCNH5Q8NCM2 988 aa18.64■□□□□ 0.57
CCL28-202ENST00000489442 NRAPQ86VF7 1730 aa18.63■□□□□ 0.57
CCL28-202ENST00000489442 EDC4Q6P2E9 1401 aaKnown RBP18.63■□□□□ 0.57
CCL28-202ENST00000489442 CPDO75976 1380 aa18.63■□□□□ 0.57
CCL28-202ENST00000489442 A0A0G2JS52 829 aa18.63■□□□□ 0.57
CCL28-202ENST00000489442 MYT1Q01538 1121 aa18.63■□□□□ 0.57
CCL28-202ENST00000489442 GLI3P10071 1580 aa18.63■□□□□ 0.57
CCL28-202ENST00000489442 HSPA5P11021 654 aaKnown RBP18.62■□□□□ 0.57
CCL28-202ENST00000489442 NME9Q86XW9 330 aa18.62■□□□□ 0.57
CCL28-202ENST00000489442 POLR3GLQ9BT43 218 aa18.62■□□□□ 0.57
CCL28-202ENST00000489442 SLIT3O75094 1523 aa18.61■□□□□ 0.57
CCL28-202ENST00000489442 ZRANB1Q9UGI0 708 aa18.6■□□□□ 0.57
CCL28-202ENST00000489442 ANKRD36BQ8N2N9 1353 aa18.6■□□□□ 0.57
CCL28-202ENST00000489442 SPATA31A5Q5VU36 1347 aa18.58■□□□□ 0.57
CCL28-202ENST00000489442 SPATA31A7Q8IWB4 1347 aa18.58■□□□□ 0.57
CCL28-202ENST00000489442 FAM98CQ17RN3 349 aaKnown RBP18.58■□□□□ 0.57
CCL28-202ENST00000489442 SEPT12Q8IYM1 358 aa18.58■□□□□ 0.57
CCL28-202ENST00000489442 CAMTA1Q9Y6Y1 1673 aa18.58■□□□□ 0.56
CCL28-202ENST00000489442 USP35Q9P2H5 1018 aa18.57■□□□□ 0.56
CCL28-202ENST00000489442 USP31Q70CQ4 1352 aa18.57■□□□□ 0.56
CCL28-202ENST00000489442 UPF1Q92900 1129 aaKnown RBP eCLIP18.56■□□□□ 0.56
CCL28-202ENST00000489442 AATKQ6ZMQ8 1374 aa18.56■□□□□ 0.56
CCL28-202ENST00000489442 BRWD3Q6RI45 1802 aa18.55■□□□□ 0.56
CCL28-202ENST00000489442 LMO7Q8WWI1 1683 aa18.55■□□□□ 0.56
CCL28-202ENST00000489442 ONECUT3O60422 494 aaPredicted RBP18.55■□□□□ 0.56
CCL28-202ENST00000489442 ARHGEF25Q86VW2 580 aa18.55■□□□□ 0.56
CCL28-202ENST00000489442 COG3Q96JB2 828 aa18.55■□□□□ 0.56
CCL28-202ENST00000489442 SPATA31A1Q5TZJ5 1347 aa18.55■□□□□ 0.56
CCL28-202ENST00000489442 LARP1Q6PKG0 1096 aaKnown RBP18.54■□□□□ 0.56
CCL28-202ENST00000489442 USP54Q70EL1 1684 aa18.53■□□□□ 0.56
CCL28-202ENST00000489442 RGPD5Q99666 1765 aa18.53■□□□□ 0.56
CCL28-202ENST00000489442 MYOM1P52179 1685 aa18.52■□□□□ 0.56
CCL28-202ENST00000489442 KRT27Q7Z3Y8 459 aa18.52■□□□□ 0.56
CCL28-202ENST00000489442 EP400Q96L91 3159 aa18.52■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms